Wall clock time and date at job start Tue Mar 31 2020 14:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38673 * 120.41994 * 2 1 4 4 C 1.38631 * 118.42268 * 179.71384 * 3 2 1 5 5 C 1.38230 * 119.15669 * 0.53337 * 4 3 2 6 6 C 1.50700 * 119.61800 * 179.71613 * 5 4 3 7 7 N 1.46499 * 109.46995 * 94.73369 * 6 5 4 8 8 S 1.65597 * 119.99926 * 165.27893 * 7 6 5 9 9 O 1.42096 * 106.40195 * 178.26439 * 8 7 6 10 10 O 1.42108 * 106.40105 * 311.18495 * 8 7 6 11 11 N 1.65605 * 107.21939 * 64.71969 * 8 7 6 12 12 C 1.46505 * 119.99527 * 90.00151 * 11 8 7 13 13 C 1.46494 * 120.00164 * 270.00117 * 11 8 7 14 14 H 1.09000 * 109.47375 * 359.97438 * 13 11 8 15 15 C 1.53002 * 109.47135 * 120.00275 * 13 11 8 16 16 C 1.50704 * 109.46994 * 240.00053 * 13 11 8 17 17 H 1.08003 * 119.99999 * 0.02562 * 16 13 11 18 18 C 1.37877 * 119.99981 * 180.02562 * 16 13 11 19 19 N 1.31521 * 119.99728 * 0.02562 * 18 16 13 20 20 Si 1.86798 * 120.00194 * 179.97438 * 18 16 13 21 21 H 1.48502 * 109.46866 * 89.99854 * 20 18 16 22 22 H 1.48501 * 109.47570 * 210.00035 * 20 18 16 23 23 H 1.48503 * 109.47035 * 330.00323 * 20 18 16 24 24 N 1.31852 * 120.76232 * 359.45158 * 5 4 3 25 25 C 1.31883 * 121.73077 * 0.26285 * 24 5 4 26 26 C 1.50700 * 119.62017 * 180.02562 * 25 24 5 27 27 H 1.08998 * 109.46933 * 270.03084 * 1 2 3 28 28 H 1.09002 * 109.46765 * 30.02664 * 1 2 3 29 29 H 1.09001 * 109.46804 * 150.02665 * 1 2 3 30 30 H 1.08003 * 120.78982 * 359.97438 * 3 2 1 31 31 H 1.07998 * 120.42194 * 180.27814 * 4 3 2 32 32 H 1.09007 * 109.46980 * 334.73388 * 6 5 4 33 33 H 1.08995 * 109.47206 * 214.73571 * 6 5 4 34 34 H 0.97001 * 119.99790 * 344.99681 * 7 6 5 35 35 H 1.09006 * 109.46779 * 90.00114 * 12 11 8 36 36 H 1.09000 * 109.47139 * 209.99765 * 12 11 8 37 37 H 1.09001 * 109.47179 * 330.00258 * 12 11 8 38 38 H 1.09002 * 109.46860 * 300.00138 * 15 13 11 39 39 H 1.09000 * 109.47334 * 59.99552 * 15 13 11 40 40 H 1.08999 * 109.47308 * 179.97438 * 15 13 11 41 41 H 0.97005 * 119.99396 * 180.02562 * 19 18 16 42 42 H 1.08995 * 109.46870 * 90.00080 * 26 25 24 43 43 H 1.09000 * 109.47158 * 210.00153 * 26 25 24 44 44 H 1.08997 * 109.46937 * 330.00179 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2092 1.1958 0.0000 4 6 3.5946 1.1475 0.0061 5 6 4.2257 -0.0823 0.0007 6 6 5.7313 -0.1469 0.0007 7 7 6.2139 -0.2880 1.3767 8 16 7.7794 -0.7462 1.6621 9 8 7.9450 -0.7514 3.0734 10 8 8.0189 -1.8856 0.8472 11 7 8.7565 0.4580 1.0809 12 6 9.1511 1.5663 1.9539 13 6 9.2261 0.4149 -0.3060 14 1 8.8331 -0.4763 -0.7952 15 6 8.7395 1.6613 -1.0481 16 6 10.7325 0.3749 -0.3253 17 1 11.2847 0.3805 0.6029 18 6 11.4056 0.3311 -1.5278 19 7 10.7330 0.3247 -2.6580 20 14 13.2728 0.2822 -1.5517 21 1 13.7313 -1.1301 -1.5273 22 1 13.7696 0.9427 -2.7855 23 1 13.8019 0.9949 -0.3612 24 7 3.5255 -1.1996 0.0007 25 6 2.2067 -1.1916 0.0007 26 6 1.4539 -2.4972 0.0013 27 1 -0.3633 0.0006 1.0277 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3633 -0.8902 -0.5134 30 1 1.6890 2.1424 -0.0004 31 1 4.1736 2.0592 0.0108 32 1 6.1342 0.7680 -0.4337 33 1 6.0582 -1.0036 -0.5886 34 1 5.6177 -0.1089 2.1206 35 1 10.0783 1.3118 2.4676 36 1 9.3024 2.4644 1.3551 37 1 8.3666 1.7473 2.6887 38 1 7.6500 1.6902 -1.0342 39 1 9.1329 2.5523 -0.5588 40 1 9.0893 1.6295 -2.0800 41 1 11.2067 0.2935 -3.5040 42 1 1.2725 -2.8114 1.0291 43 1 0.5015 -2.3677 -0.5126 44 1 2.0435 -3.2567 -0.5121 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416550161.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:26:14 Heat of formation + Delta-G solvation = -69.659905 kcal Electronic energy + Delta-G solvation = -26414.128023 eV Core-core repulsion = 22685.176569 eV Total energy + Delta-G solvation = -3728.951454 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.45361 -38.39841 -37.89523 -36.92861 -36.87749 -34.51697 -34.27804 -33.87305 -30.90245 -29.29893 -29.06191 -27.27474 -26.99749 -25.53379 -23.39234 -22.60188 -22.19497 -20.38599 -19.02533 -18.57807 -18.16054 -17.81016 -17.48283 -16.81954 -16.45678 -16.00247 -15.74535 -15.46895 -15.26589 -14.86443 -14.74196 -14.56107 -14.18691 -13.84626 -13.70930 -13.66069 -13.53406 -13.38266 -13.24066 -13.20014 -13.12438 -13.00685 -12.97249 -12.80145 -12.76479 -12.58528 -12.19530 -12.14074 -12.07507 -11.88312 -11.11973 -10.68037 -10.61084 -10.47263 -10.37228 -9.73231 -9.60614 -8.10467 -6.23347 -0.44948 0.10884 0.34720 1.42487 1.45077 1.53594 2.02660 2.43724 2.56416 2.80540 3.11366 3.18131 3.41808 3.68085 3.84613 4.01387 4.03547 4.07139 4.19280 4.36163 4.56906 4.66215 4.68975 4.70457 4.72266 4.75553 4.83682 4.86909 4.92432 5.04758 5.08986 5.13416 5.15906 5.20910 5.21291 5.28804 5.38779 5.63518 5.71223 5.82354 5.89584 6.02811 6.17682 6.32936 6.83760 7.06398 7.45297 8.93542 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019043 B = 0.003285 C = 0.003122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1469.971842 B = 8522.438965 C = 8965.534187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.133 4.133 3 C -0.076 4.076 4 C -0.156 4.156 5 C 0.097 3.903 6 C 0.172 3.828 7 N -1.108 6.108 8 S 2.797 3.203 9 O -1.008 7.008 10 O -1.016 7.016 11 N -0.994 5.994 12 C 0.104 3.896 13 C 0.271 3.729 14 H 0.025 0.975 15 C -0.138 4.138 16 C -0.539 4.539 17 H 0.055 0.945 18 C 0.019 3.981 19 N -0.912 5.912 20 Si 0.953 3.047 21 H -0.284 1.284 22 H -0.278 1.278 23 H -0.267 1.267 24 N -0.505 5.505 25 C 0.102 3.898 26 C -0.106 4.106 27 H 0.085 0.915 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.169 0.831 31 H 0.158 0.842 32 H 0.098 0.902 33 H 0.066 0.934 34 H 0.421 0.579 35 H 0.040 0.960 36 H 0.082 0.918 37 H 0.080 0.920 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.067 0.933 41 H 0.264 0.736 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.343 5.595 4.905 23.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.136 4.136 3 C -0.101 4.101 4 C -0.177 4.177 5 C -0.042 4.042 6 C 0.045 3.955 7 N -0.870 5.870 8 S 2.806 3.194 9 O -0.992 6.992 10 O -0.999 6.999 11 N -0.837 5.837 12 C -0.042 4.042 13 C 0.166 3.834 14 H 0.043 0.957 15 C -0.198 4.198 16 C -0.578 4.578 17 H 0.073 0.927 18 C -0.181 4.181 19 N -0.551 5.551 20 Si 0.779 3.221 21 H -0.211 1.211 22 H -0.203 1.203 23 H -0.192 1.192 24 N -0.215 5.215 25 C -0.037 4.037 26 C -0.163 4.163 27 H 0.104 0.896 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.186 0.814 31 H 0.175 0.825 32 H 0.116 0.884 33 H 0.084 0.916 34 H 0.256 0.744 35 H 0.059 0.941 36 H 0.100 0.900 37 H 0.098 0.902 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.123 0.877 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -21.440 3.935 4.983 22.360 hybrid contribution 0.794 0.757 -0.123 1.104 sum -20.646 4.693 4.860 21.723 Atomic orbital electron populations 1.20897 0.87552 1.04504 1.03712 1.21169 0.99401 0.92952 1.00029 1.21897 0.93315 0.99486 0.95409 1.22228 0.96241 0.98561 1.00621 1.20974 0.94867 0.89601 0.98740 1.20111 0.89812 1.03111 0.82430 1.55665 1.30088 1.87876 1.13363 1.01206 0.72994 0.73443 0.71726 1.93516 1.86262 1.87643 1.31806 1.93548 1.85196 1.50037 1.71118 1.57567 1.63224 1.40786 1.22105 1.21359 1.00021 0.89814 0.92978 1.18460 0.93659 0.95329 0.75909 0.95703 1.21982 0.97715 0.97716 1.02338 1.21653 0.92472 1.51079 0.92641 0.92685 1.25601 1.02509 0.94729 0.95271 1.69969 1.36659 1.50744 0.97699 0.85637 0.80709 0.77920 0.77838 1.21071 1.20309 1.19159 1.67259 1.09278 1.32272 1.12734 1.21681 0.88889 0.97134 0.95950 1.20867 0.99851 0.91761 1.03798 0.89647 0.89791 0.89797 0.81354 0.82483 0.88393 0.91581 0.74432 0.94131 0.89950 0.90157 0.93869 0.93583 0.91408 0.92650 0.89612 0.87728 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.93 9.62 71.24 0.69 -0.25 16 2 C -0.13 -2.21 5.90 -19.77 -0.12 -2.33 16 3 C -0.08 -1.19 9.86 22.47 0.22 -0.97 16 4 C -0.16 -3.15 9.72 22.36 0.22 -2.93 16 5 C 0.10 2.65 6.18 42.55 0.26 2.91 16 6 C 0.17 5.35 6.55 85.63 0.56 5.91 16 7 N -1.11 -34.82 6.05 -190.79 -1.15 -35.97 16 8 S 2.80 113.80 6.09 -56.49 -0.34 113.46 16 9 O -1.01 -42.64 17.21 -128.00 -2.20 -44.85 16 10 O -1.02 -50.93 16.19 -128.00 -2.07 -53.00 16 11 N -0.99 -40.94 3.12 -520.43 -1.62 -42.56 16 12 C 0.10 3.54 9.53 127.77 1.22 4.75 16 13 C 0.27 13.19 2.62 44.25 0.12 13.30 16 14 H 0.03 1.39 6.91 -2.39 -0.02 1.38 16 15 C -0.14 -5.94 8.95 71.98 0.64 -5.29 16 16 C -0.54 -29.30 8.37 25.60 0.21 -29.09 16 17 H 0.05 2.99 7.65 -2.91 -0.02 2.97 16 18 C 0.02 1.03 5.30 84.65 0.45 1.48 16 19 N -0.91 -51.04 11.32 21.45 0.24 -50.80 16 20 Si 0.95 43.59 29.54 68.60 2.03 45.62 16 21 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 22 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 N -0.50 -14.88 10.19 -172.08 -1.75 -16.63 16 25 C 0.10 2.28 6.78 42.54 0.29 2.57 16 26 C -0.11 -1.73 9.77 71.24 0.70 -1.03 16 27 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.08 0.48 8.10 -2.39 -0.02 0.46 16 29 H 0.08 0.56 5.96 -2.39 -0.01 0.55 16 30 H 0.17 1.46 8.06 -2.91 -0.02 1.44 16 31 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 32 H 0.10 2.76 6.06 -2.38 -0.01 2.74 16 33 H 0.07 2.45 7.76 -2.39 -0.02 2.43 16 34 H 0.42 11.12 8.64 -96.74 -0.84 10.28 16 35 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 36 H 0.08 2.63 6.43 -2.39 -0.02 2.61 16 37 H 0.08 2.21 7.79 -2.39 -0.02 2.19 16 38 H 0.04 1.53 6.16 -2.39 -0.01 1.52 16 39 H 0.05 1.84 6.66 -2.39 -0.02 1.82 16 40 H 0.07 3.31 6.07 -2.39 -0.01 3.30 16 41 H 0.26 14.08 8.31 -92.70 -0.77 13.31 16 42 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.10 1.05 5.94 -2.39 -0.01 1.04 16 44 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -74.71 367.29 -1.23 -75.94 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: 0.19 Total: 19.77 kcal Atomic # 6 Polarization: -16.43 SS G_CDS: 5.46 Total: -10.97 kcal Atomic # 7 Polarization: -141.68 SS G_CDS: -4.29 Total: -145.97 kcal Atomic # 8 Polarization: -93.57 SS G_CDS: -4.27 Total: -97.85 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: 113.80 SS G_CDS: -0.34 Total: 113.46 kcal Total: -74.71 -1.23 -75.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416550161.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.283 kcal (2) G-P(sol) polarization free energy of solvation -74.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds