Wall clock time and date at job start Tue Mar 31 2020 15:53:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30055 * 126.18300 * 2 1 4 4 O 1.21283 * 110.47475 * 180.02562 * 3 2 1 5 5 C 1.34204 * 109.68964 * 0.02562 * 4 3 2 6 6 C 1.47759 * 126.67752 * 180.02562 * 5 4 3 7 7 C 1.39334 * 120.21318 * 186.74885 * 6 5 4 8 8 C 1.38089 * 119.99607 * 179.72196 * 7 6 5 9 9 C 1.38460 * 120.42660 * 0.02562 * 8 7 6 10 10 C 1.38082 * 120.42817 * 359.97438 * 9 8 7 11 11 C 1.39341 * 119.99275 * 359.97438 * 10 9 8 12 12 C 1.47780 * 120.21370 * 180.02562 * 11 10 9 13 13 O 1.21549 * 120.00013 * 232.67569 * 12 11 10 14 14 N 1.34773 * 119.99718 * 52.67006 * 12 11 10 15 15 C 1.46497 * 119.99824 * 183.48587 * 14 12 11 16 16 C 1.53004 * 109.46891 * 175.13894 * 15 14 12 17 17 C 1.50694 * 115.55715 * 65.34601 * 16 15 14 18 18 H 1.08004 * 119.99959 * 268.16533 * 17 16 15 19 19 C 1.37875 * 120.00161 * 88.15875 * 17 16 15 20 20 N 1.31520 * 120.00054 * 179.66518 * 19 17 16 21 21 Si 1.86801 * 120.00111 * 359.66308 * 19 17 16 22 22 H 1.48500 * 109.46812 * 91.95110 * 21 19 17 23 23 H 1.48494 * 109.47067 * 211.95202 * 21 19 17 24 24 H 1.48504 * 109.46840 * 331.94940 * 21 19 17 25 25 C 1.53004 * 117.49716 * 279.66801 * 16 15 14 26 26 C 1.53005 * 117.49523 * 211.01618 * 16 15 14 27 27 N 1.32112 * 106.65078 * 0.25615 * 5 4 3 28 28 H 1.09001 * 109.46961 * 89.97660 * 1 2 3 29 29 H 1.09007 * 109.47290 * 209.97204 * 1 2 3 30 30 H 1.08998 * 109.47429 * 329.97437 * 1 2 3 31 31 H 1.07998 * 120.00194 * 359.74032 * 7 6 5 32 32 H 1.07998 * 119.78683 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.78408 * 179.97438 * 9 8 7 34 34 H 1.08001 * 120.00556 * 179.97438 * 10 9 8 35 35 H 0.97005 * 120.00159 * 3.48197 * 14 12 11 36 36 H 1.09000 * 109.47069 * 295.13421 * 15 14 12 37 37 H 1.09000 * 109.47577 * 55.13560 * 15 14 12 38 38 H 0.96997 * 119.99829 * 180.02562 * 20 19 17 39 39 H 1.08995 * 117.49768 * 0.02562 * 25 16 15 40 40 H 1.08999 * 117.49345 * 145.02029 * 25 16 15 41 41 H 1.09000 * 117.49502 * 214.97871 * 26 16 15 42 42 H 1.08998 * 117.49982 * 359.96938 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0497 0.0000 4 8 3.4423 0.7214 -0.0005 5 6 3.5355 -0.6174 -0.0015 6 6 4.7790 -1.4156 -0.0018 7 6 4.7232 -2.8005 -0.1443 8 6 5.8884 -3.5415 -0.1497 9 6 7.1169 -2.9174 -0.0137 10 6 7.1926 -1.5461 0.1286 11 6 6.0280 -0.7811 0.1355 12 6 6.1035 0.6870 0.2869 13 8 5.4484 1.2438 1.1462 14 7 6.8987 1.4085 -0.5276 15 6 7.0325 2.8537 -0.3288 16 6 8.0770 3.4075 -1.3001 17 6 7.7177 3.3194 -2.7609 18 1 8.0170 2.4580 -3.3396 19 6 7.0066 4.3383 -3.3586 20 7 6.6987 4.2644 -4.6351 21 14 6.4805 5.8236 -2.3554 22 1 7.5188 6.8807 -2.4545 23 1 5.1925 6.3441 -2.8798 24 1 6.3122 5.4266 -0.9343 25 6 9.5506 3.2401 -0.9237 26 6 8.8922 4.6197 -0.8450 27 7 2.2992 -1.0830 -0.0071 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 3.7686 -3.2944 -0.2508 32 1 5.8412 -4.6147 -0.2608 33 1 8.0217 -3.5071 -0.0189 34 1 8.1545 -1.0664 0.2347 35 1 7.3825 0.9708 -1.2455 36 1 6.0728 3.3363 -0.5135 37 1 7.3477 3.0520 0.6956 38 1 6.1988 4.9814 -5.0557 39 1 9.7758 2.7351 0.0156 40 1 10.2600 3.0665 -1.7328 41 1 9.1688 5.3532 -1.6024 42 1 8.6841 5.0229 0.1460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431167619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:27 Heat of formation + Delta-G solvation = 88.349418 kcal Electronic energy + Delta-G solvation = -27626.794787 eV Core-core repulsion = 23769.251179 eV Total energy + Delta-G solvation = -3857.543607 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.34389 -40.11962 -38.40656 -37.01580 -35.93529 -33.79961 -33.40037 -32.14520 -31.48019 -30.71559 -29.03280 -26.94167 -25.44806 -24.58095 -23.78952 -22.53590 -21.79713 -21.41745 -20.04065 -19.32130 -18.02419 -17.90638 -17.20352 -16.47885 -16.31343 -15.69299 -15.35555 -15.04695 -14.86082 -14.32048 -14.02871 -13.85118 -13.77603 -13.63922 -13.21150 -13.03727 -12.91895 -12.76946 -12.44983 -12.31813 -12.06840 -11.99090 -11.57402 -11.46431 -11.17762 -10.96076 -10.83731 -10.53264 -10.34060 -10.20260 -9.79611 -9.55382 -9.22277 -9.21410 -8.84304 -8.69230 -8.59747 -8.37225 -6.17285 -4.22462 0.27322 0.92303 1.67797 2.35569 2.78280 2.91162 3.27954 3.39440 3.40230 3.46406 3.57851 3.65910 4.08574 4.39347 4.64414 4.66690 4.70945 4.84850 4.96670 5.07763 5.13105 5.15031 5.28994 5.34786 5.40388 5.52137 5.64118 5.68541 5.86672 5.91153 5.99048 6.03631 6.04342 6.10013 6.13424 6.20349 6.39279 6.47280 6.51104 6.67876 6.94120 7.02005 7.05889 7.65592 8.00984 8.26956 8.38404 8.58437 8.82296 9.45938 10.93873 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.004568 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.979767 B = 6128.401200 C = 7682.251956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.157 3.843 3 N -0.378 5.378 4 O 0.125 5.875 5 C 0.219 3.781 6 C 0.009 3.991 7 C -0.068 4.068 8 C -0.110 4.110 9 C -0.095 4.095 10 C -0.090 4.090 11 C -0.080 4.080 12 C 0.540 3.460 13 O -0.531 6.531 14 N -0.688 5.688 15 C 0.156 3.844 16 C -0.016 4.016 17 C -0.492 4.492 18 H 0.079 0.921 19 C 0.082 3.918 20 N -0.894 5.894 21 Si 0.878 3.122 22 H -0.278 1.278 23 H -0.294 1.294 24 H -0.256 1.256 25 C -0.178 4.178 26 C -0.192 4.192 27 N -0.478 5.478 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.137 0.863 33 H 0.136 0.864 34 H 0.141 0.859 35 H 0.407 0.593 36 H 0.066 0.934 37 H 0.049 0.951 38 H 0.266 0.734 39 H 0.073 0.927 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.669 -15.437 9.316 18.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.116 4.116 3 N -0.082 5.082 4 O 0.062 5.938 5 C 0.003 3.997 6 C 0.006 3.994 7 C -0.088 4.088 8 C -0.128 4.128 9 C -0.113 4.113 10 C -0.108 4.108 11 C -0.085 4.085 12 C 0.324 3.676 13 O -0.408 6.408 14 N -0.337 5.337 15 C 0.032 3.968 16 C -0.017 4.017 17 C -0.529 4.529 18 H 0.097 0.903 19 C -0.122 4.122 20 N -0.530 5.530 21 Si 0.705 3.295 22 H -0.204 1.204 23 H -0.221 1.221 24 H -0.180 1.180 25 C -0.215 4.215 26 C -0.230 4.230 27 N -0.213 5.213 28 H 0.106 0.894 29 H 0.108 0.892 30 H 0.104 0.896 31 H 0.161 0.839 32 H 0.155 0.845 33 H 0.154 0.846 34 H 0.159 0.841 35 H 0.242 0.758 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.075 0.925 39 H 0.091 0.909 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -3.939 -14.350 9.757 17.794 hybrid contribution 0.070 0.760 0.001 0.763 sum -3.869 -13.590 9.758 17.172 Atomic orbital electron populations 1.20096 0.82940 1.04436 1.04194 1.25778 1.00502 0.83593 1.01719 1.74673 0.89584 1.24057 1.19876 1.85674 1.21337 1.23134 1.63704 1.26108 0.94155 0.82427 0.97031 1.17093 0.85700 0.91814 1.04783 1.21161 1.00016 0.90881 0.96722 1.21244 0.91718 1.00487 0.99334 1.21357 0.98376 0.94325 0.97273 1.21276 0.97342 0.93967 0.98254 1.20190 0.92985 0.94594 1.00753 1.18169 0.80633 0.85934 0.82856 1.90813 1.43290 1.71636 1.35109 1.45821 1.45877 1.09556 1.32433 1.21221 1.00117 0.78471 0.96951 1.19615 0.88351 0.97903 0.95849 1.20168 1.36026 1.06895 0.89858 0.90343 1.24962 0.94531 0.98137 0.94555 1.69881 1.38923 1.33563 1.10657 0.86870 0.77739 0.83075 0.81784 1.20433 1.22053 1.18020 1.22851 0.97969 0.99642 1.01029 1.22948 1.07182 0.92000 1.00867 1.71967 0.98869 1.29312 1.21107 0.89414 0.89220 0.89573 0.83928 0.84546 0.84588 0.84107 0.75765 0.91548 0.93284 0.92465 0.90881 0.89363 0.89144 0.90688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.62 10.51 36.01 0.38 -0.24 16 2 C 0.16 2.51 8.20 -156.57 -1.28 1.23 16 3 N -0.38 -7.32 12.15 31.18 0.38 -6.94 16 4 O 0.12 2.52 7.88 -6.85 -0.05 2.47 16 5 C 0.22 3.79 7.71 -13.88 -0.11 3.69 16 6 C 0.01 0.13 5.90 -104.64 -0.62 -0.49 16 7 C -0.07 -0.74 9.70 -39.23 -0.38 -1.12 16 8 C -0.11 -0.89 10.03 -39.55 -0.40 -1.29 16 9 C -0.09 -0.77 10.02 -39.56 -0.40 -1.17 16 10 C -0.09 -0.96 9.71 -39.23 -0.38 -1.34 16 11 C -0.08 -1.16 5.68 -104.63 -0.59 -1.76 16 12 C 0.54 9.78 6.16 -12.36 -0.08 9.71 16 13 O -0.53 -11.36 14.57 -18.17 -0.26 -11.63 16 14 N -0.69 -12.63 5.44 -61.27 -0.33 -12.96 16 15 C 0.16 3.24 5.14 -4.04 -0.02 3.22 16 16 C -0.02 -0.34 0.83 -155.66 -0.13 -0.47 16 17 C -0.49 -12.77 9.20 -34.44 -0.32 -13.09 16 18 H 0.08 2.18 8.06 -52.48 -0.42 1.76 16 19 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 20 N -0.89 -26.48 13.96 55.43 0.77 -25.71 16 21 Si 0.88 21.61 24.79 -169.99 -4.21 17.40 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 24 H -0.26 -6.07 5.84 56.52 0.33 -5.74 16 25 C -0.18 -3.28 9.96 -26.69 -0.27 -3.54 16 26 C -0.19 -3.87 7.46 -26.69 -0.20 -4.07 16 27 N -0.48 -7.72 11.27 -10.19 -0.11 -7.84 16 28 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.09 0.77 8.14 -51.92 -0.42 0.34 16 30 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.14 1.38 7.89 -52.49 -0.41 0.97 16 32 H 0.14 0.69 8.06 -52.49 -0.42 0.26 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.14 1.28 8.06 -52.49 -0.42 0.86 16 35 H 0.41 6.91 8.29 -40.82 -0.34 6.57 16 36 H 0.07 1.57 6.96 -51.93 -0.36 1.21 16 37 H 0.05 0.97 8.09 -51.93 -0.42 0.55 16 38 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 39 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.09 1.63 8.14 -51.93 -0.42 1.21 16 41 H 0.09 1.92 7.08 -51.93 -0.37 1.55 16 42 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 LS Contribution 359.48 15.07 5.42 5.42 Total: -1.00 -33.55 359.48 -8.63 -42.18 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: -5.34 Total: 6.17 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -4.88 Total: -8.58 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: 0.70 Total: -53.44 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.32 Total: -9.15 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.21 Total: 17.40 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -33.55 -8.63 -42.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431167619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.534 kcal (2) G-P(sol) polarization free energy of solvation -33.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds