Wall clock time and date at job start Tue Mar 31 2020 15:53:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30055 * 126.18300 * 2 1 4 4 O 1.21283 * 110.47475 * 180.02562 * 3 2 1 5 5 C 1.34204 * 109.68964 * 0.02562 * 4 3 2 6 6 C 1.47759 * 126.67752 * 180.02562 * 5 4 3 7 7 C 1.39334 * 120.21318 * 186.74885 * 6 5 4 8 8 C 1.38089 * 119.99607 * 179.72196 * 7 6 5 9 9 C 1.38460 * 120.42660 * 0.02562 * 8 7 6 10 10 C 1.38082 * 120.42817 * 359.97438 * 9 8 7 11 11 C 1.39341 * 119.99275 * 359.97438 * 10 9 8 12 12 C 1.47780 * 120.21370 * 180.02562 * 11 10 9 13 13 O 1.21549 * 120.00013 * 232.67569 * 12 11 10 14 14 N 1.34773 * 119.99718 * 52.67006 * 12 11 10 15 15 C 1.46497 * 119.99824 * 183.48587 * 14 12 11 16 16 C 1.53004 * 109.46891 * 175.13894 * 15 14 12 17 17 C 1.50694 * 115.55715 * 65.34601 * 16 15 14 18 18 H 1.08004 * 119.99959 * 268.16533 * 17 16 15 19 19 C 1.37875 * 120.00161 * 88.15875 * 17 16 15 20 20 N 1.31520 * 120.00054 * 179.66518 * 19 17 16 21 21 Si 1.86801 * 120.00111 * 359.66308 * 19 17 16 22 22 H 1.48500 * 109.46812 * 91.95110 * 21 19 17 23 23 H 1.48494 * 109.47067 * 211.95202 * 21 19 17 24 24 H 1.48504 * 109.46840 * 331.94940 * 21 19 17 25 25 C 1.53004 * 117.49716 * 279.66801 * 16 15 14 26 26 C 1.53005 * 117.49523 * 211.01618 * 16 15 14 27 27 N 1.32112 * 106.65078 * 0.25615 * 5 4 3 28 28 H 1.09001 * 109.46961 * 89.97660 * 1 2 3 29 29 H 1.09007 * 109.47290 * 209.97204 * 1 2 3 30 30 H 1.08998 * 109.47429 * 329.97437 * 1 2 3 31 31 H 1.07998 * 120.00194 * 359.74032 * 7 6 5 32 32 H 1.07998 * 119.78683 * 180.02562 * 8 7 6 33 33 H 1.07999 * 119.78408 * 179.97438 * 9 8 7 34 34 H 1.08001 * 120.00556 * 179.97438 * 10 9 8 35 35 H 0.97005 * 120.00159 * 3.48197 * 14 12 11 36 36 H 1.09000 * 109.47069 * 295.13421 * 15 14 12 37 37 H 1.09000 * 109.47577 * 55.13560 * 15 14 12 38 38 H 0.96997 * 119.99829 * 180.02562 * 20 19 17 39 39 H 1.08995 * 117.49768 * 0.02562 * 25 16 15 40 40 H 1.08999 * 117.49345 * 145.02029 * 25 16 15 41 41 H 1.09000 * 117.49502 * 214.97871 * 26 16 15 42 42 H 1.08998 * 117.49982 * 359.96938 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2748 1.0497 0.0000 4 8 3.4423 0.7214 -0.0005 5 6 3.5355 -0.6174 -0.0015 6 6 4.7790 -1.4156 -0.0018 7 6 4.7232 -2.8005 -0.1443 8 6 5.8884 -3.5415 -0.1497 9 6 7.1169 -2.9174 -0.0137 10 6 7.1926 -1.5461 0.1286 11 6 6.0280 -0.7811 0.1355 12 6 6.1035 0.6870 0.2869 13 8 5.4484 1.2438 1.1462 14 7 6.8987 1.4085 -0.5276 15 6 7.0325 2.8537 -0.3288 16 6 8.0770 3.4075 -1.3001 17 6 7.7177 3.3194 -2.7609 18 1 8.0170 2.4580 -3.3396 19 6 7.0066 4.3383 -3.3586 20 7 6.6987 4.2644 -4.6351 21 14 6.4805 5.8236 -2.3554 22 1 7.5188 6.8807 -2.4545 23 1 5.1925 6.3441 -2.8798 24 1 6.3122 5.4266 -0.9343 25 6 9.5506 3.2401 -0.9237 26 6 8.8922 4.6197 -0.8450 27 7 2.2992 -1.0830 -0.0071 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 3.7686 -3.2944 -0.2508 32 1 5.8412 -4.6147 -0.2608 33 1 8.0217 -3.5071 -0.0189 34 1 8.1545 -1.0664 0.2347 35 1 7.3825 0.9708 -1.2455 36 1 6.0728 3.3363 -0.5135 37 1 7.3477 3.0520 0.6956 38 1 6.1988 4.9814 -5.0557 39 1 9.7758 2.7351 0.0156 40 1 10.2600 3.0665 -1.7328 41 1 9.1688 5.3532 -1.6024 42 1 8.6841 5.0229 0.1460 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431167619.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:26 Heat of formation + Delta-G solvation = 64.742725 kcal Electronic energy + Delta-G solvation = -27627.818450 eV Core-core repulsion = 23769.251179 eV Total energy + Delta-G solvation = -3858.567270 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.61390 -41.30123 -39.61721 -38.61385 -37.15765 -35.18762 -34.63706 -34.23199 -32.43924 -31.65854 -30.08240 -28.56215 -27.30415 -25.73619 -24.91380 -23.60668 -23.34012 -22.55786 -21.38386 -20.98156 -19.28846 -19.21194 -18.53594 -18.11893 -17.45378 -17.08359 -16.88781 -16.53065 -16.01650 -15.50471 -15.36559 -15.09893 -14.81840 -14.79182 -14.55806 -14.48217 -14.20625 -14.14355 -13.89386 -13.67822 -13.33445 -13.13032 -12.90983 -12.72444 -12.58604 -12.41348 -12.21239 -12.14498 -11.98728 -11.61398 -11.46755 -11.12640 -10.99724 -10.69292 -10.35141 -10.11299 -9.95018 -9.81386 -8.33056 -6.38359 -0.78532 0.07209 0.54769 1.19725 1.28303 1.36214 1.45591 1.60572 1.62806 2.17231 2.33033 2.44993 2.68675 2.98977 3.03170 3.21830 3.66268 3.72498 3.80373 4.01044 4.10897 4.27529 4.31900 4.36378 4.38766 4.41751 4.49377 4.50832 4.52523 4.62811 4.75126 4.81380 4.87329 4.91496 4.99835 5.09954 5.18319 5.27962 5.29622 5.37722 5.46631 5.51465 5.68083 5.78631 6.25767 6.57031 6.71204 6.98449 7.17895 7.32559 8.81460 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.004568 C = 0.003644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.979767 B = 6128.401200 C = 7682.251956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.164 3.836 3 N -0.423 5.423 4 O 0.079 5.921 5 C 0.215 3.785 6 C -0.025 4.025 7 C -0.066 4.066 8 C -0.091 4.091 9 C -0.075 4.075 10 C -0.088 4.088 11 C -0.107 4.107 12 C 0.541 3.459 13 O -0.571 6.571 14 N -0.688 5.688 15 C 0.167 3.833 16 C -0.042 4.042 17 C -0.476 4.476 18 H 0.049 0.951 19 C 0.028 3.972 20 N -0.943 5.943 21 Si 0.924 3.076 22 H -0.263 1.263 23 H -0.308 1.308 24 H -0.245 1.245 25 C -0.144 4.144 26 C -0.195 4.195 27 N -0.483 5.483 28 H 0.105 0.895 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.152 0.848 32 H 0.181 0.819 33 H 0.181 0.819 34 H 0.157 0.843 35 H 0.413 0.587 36 H 0.027 0.973 37 H 0.063 0.937 38 H 0.263 0.737 39 H 0.107 0.893 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.120 -18.445 10.926 21.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.109 4.109 3 N -0.135 5.135 4 O 0.024 5.976 5 C -0.001 4.001 6 C -0.028 4.028 7 C -0.086 4.086 8 C -0.109 4.109 9 C -0.094 4.094 10 C -0.106 4.106 11 C -0.112 4.112 12 C 0.327 3.673 13 O -0.451 6.451 14 N -0.337 5.337 15 C 0.042 3.958 16 C -0.043 4.043 17 C -0.513 4.513 18 H 0.068 0.932 19 C -0.170 4.170 20 N -0.583 5.583 21 Si 0.750 3.250 22 H -0.188 1.188 23 H -0.236 1.236 24 H -0.168 1.168 25 C -0.181 4.181 26 C -0.232 4.232 27 N -0.218 5.218 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.170 0.830 32 H 0.198 0.802 33 H 0.199 0.801 34 H 0.175 0.825 35 H 0.249 0.751 36 H 0.046 0.954 37 H 0.081 0.919 38 H 0.072 0.928 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.097 0.903 42 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -2.313 -17.383 11.381 20.906 hybrid contribution -0.365 1.457 -0.510 1.586 sum -2.678 -15.926 10.871 19.468 Atomic orbital electron populations 1.20400 0.79332 1.06083 1.05785 1.26786 1.02441 0.82873 0.98822 1.74652 0.89845 1.25860 1.23128 1.85607 1.21955 1.24632 1.65400 1.26940 0.95729 0.81887 0.95530 1.17418 0.84542 0.93157 1.07680 1.21422 1.01866 0.89256 0.96025 1.21788 0.90416 1.02382 0.96266 1.21891 1.00162 0.93193 0.94106 1.21575 0.96471 0.95199 0.97354 1.19992 0.94648 0.92297 1.04219 1.18751 0.79167 0.87666 0.81672 1.90776 1.44528 1.73039 1.36752 1.45765 1.46406 1.08650 1.32853 1.20899 0.97846 0.79730 0.97282 1.19427 0.90716 1.00811 0.93379 1.20375 1.33953 1.05001 0.91991 0.93249 1.25662 0.95264 1.00925 0.95197 1.70006 1.41195 1.34673 1.12406 0.86116 0.77032 0.80785 0.81066 1.18758 1.23556 1.16804 1.22891 0.94860 0.97994 1.02324 1.23018 1.06544 0.92155 1.01530 1.71999 0.98561 1.29182 1.22072 0.87645 0.86797 0.88627 0.83049 0.80159 0.80143 0.82500 0.75108 0.95413 0.91916 0.92791 0.87514 0.89234 0.90333 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.18 10.51 71.24 0.75 -0.43 16 2 C 0.16 5.40 8.20 138.53 1.14 6.53 16 3 N -0.42 -17.42 12.15 -58.65 -0.71 -18.14 16 4 O 0.08 3.42 7.88 92.08 0.73 4.15 16 5 C 0.22 7.79 7.71 87.29 0.67 8.46 16 6 C -0.02 -0.72 5.90 -19.88 -0.12 -0.84 16 7 C -0.07 -1.28 9.70 22.50 0.22 -1.06 16 8 C -0.09 -1.04 10.03 22.29 0.22 -0.81 16 9 C -0.08 -0.84 10.02 22.29 0.22 -0.62 16 10 C -0.09 -1.63 9.71 22.50 0.22 -1.41 16 11 C -0.11 -3.06 5.68 -19.87 -0.11 -3.18 16 12 C 0.54 20.21 6.16 86.77 0.53 20.74 16 13 O -0.57 -25.72 14.57 18.60 0.27 -25.45 16 14 N -0.69 -25.69 5.44 -466.05 -2.54 -28.22 16 15 C 0.17 7.01 5.14 86.38 0.44 7.45 16 16 C -0.04 -1.80 0.83 -52.92 -0.04 -1.84 16 17 C -0.48 -25.27 9.20 25.60 0.24 -25.03 16 18 H 0.05 2.85 8.06 -2.91 -0.02 2.82 16 19 C 0.03 1.58 5.47 84.65 0.46 2.04 16 20 N -0.94 -58.28 13.96 21.45 0.30 -57.98 16 21 Si 0.92 45.62 24.79 68.60 1.70 47.32 16 22 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.31 -15.79 7.11 99.48 0.71 -15.08 16 24 H -0.24 -11.51 5.84 99.48 0.58 -10.93 16 25 C -0.14 -4.91 9.96 30.62 0.30 -4.61 16 26 C -0.19 -7.46 7.46 30.62 0.23 -7.23 16 27 N -0.48 -15.95 11.27 -302.82 -3.41 -19.36 16 28 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.11 1.74 8.14 -2.38 -0.02 1.72 16 30 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.15 2.60 7.89 -2.91 -0.02 2.58 16 32 H 0.18 0.57 8.06 -2.91 -0.02 0.55 16 33 H 0.18 0.54 8.06 -2.91 -0.02 0.52 16 34 H 0.16 2.34 8.06 -2.91 -0.02 2.32 16 35 H 0.41 14.16 8.29 -92.70 -0.77 13.39 16 36 H 0.03 1.36 6.96 -2.39 -0.02 1.35 16 37 H 0.06 2.45 8.09 -2.39 -0.02 2.43 16 38 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 39 H 0.11 2.99 8.14 -2.39 -0.02 2.97 16 40 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 41 H 0.08 3.21 7.08 -2.39 -0.02 3.19 16 42 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 Total: -1.00 -80.40 359.48 1.88 -78.52 By element: Atomic # 1 Polarization: 20.82 SS G_CDS: 0.17 Total: 20.99 kcal Atomic # 6 Polarization: -7.21 SS G_CDS: 5.38 Total: -1.83 kcal Atomic # 7 Polarization: -117.34 SS G_CDS: -6.36 Total: -123.70 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 1.00 Total: -21.30 kcal Atomic # 14 Polarization: 45.62 SS G_CDS: 1.70 Total: 47.32 kcal Total: -80.40 1.88 -78.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431167619.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.264 kcal (2) G-P(sol) polarization free energy of solvation -80.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds