Wall clock time and date at job start Tue Mar 31 2020 14:35:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40049 * 120.23519 * 2 1 4 4 C 1.35324 * 120.07017 * 180.27973 * 3 2 1 5 5 N 1.36118 * 120.76258 * 359.51226 * 4 3 2 6 6 C 1.36580 * 120.52626 * 0.24153 * 5 4 3 7 7 C 1.36453 * 120.23669 * 179.80066 * 2 1 3 8 8 N 1.33577 * 121.16214 * 179.97438 * 6 5 4 9 9 C 1.31680 * 121.70875 * 0.05320 * 8 6 5 10 10 C 1.40167 * 119.80974 * 359.97402 * 9 8 6 11 11 C 1.46742 * 120.75528 * 179.97438 * 10 9 8 12 12 O 1.21699 * 119.99730 * 354.08632 * 11 10 9 13 13 N 1.34776 * 120.00453 * 174.08402 * 11 10 9 14 14 C 1.46492 * 120.00566 * 186.05366 * 13 11 10 15 15 C 1.53001 * 109.47449 * 183.90782 * 14 13 11 16 16 C 1.50693 * 115.54976 * 306.02672 * 15 14 13 17 17 H 1.07997 * 120.00296 * 144.07751 * 16 15 14 18 18 C 1.37880 * 119.99967 * 324.08834 * 16 15 14 19 19 N 1.31510 * 120.00152 * 351.41903 * 18 16 15 20 20 Si 1.86797 * 119.99990 * 171.42534 * 18 16 15 21 21 H 1.48501 * 109.47306 * 89.99560 * 20 18 16 22 22 H 1.48493 * 109.47280 * 209.99703 * 20 18 16 23 23 H 1.48510 * 109.47078 * 329.99567 * 20 18 16 24 24 C 1.53005 * 117.49927 * 160.35590 * 15 14 13 25 25 C 1.52995 * 117.49702 * 91.69866 * 15 14 13 26 26 C 1.35068 * 119.41744 * 180.26260 * 5 4 3 27 27 O 1.21861 * 120.61295 * 0.02562 * 26 5 4 28 28 H 1.09006 * 109.46836 * 270.19957 * 1 2 3 29 29 H 1.08997 * 109.47523 * 30.19270 * 1 2 3 30 30 H 1.09000 * 109.47452 * 150.20223 * 1 2 3 31 31 H 1.08001 * 119.96467 * 0.04919 * 3 2 1 32 32 H 1.07998 * 119.62168 * 179.79821 * 4 3 2 33 33 H 1.08001 * 120.23701 * 0.02562 * 7 2 1 34 34 H 1.08001 * 120.09359 * 180.02562 * 9 8 6 35 35 H 0.97007 * 119.99421 * 6.05259 * 13 11 10 36 36 H 1.09005 * 109.46935 * 303.90806 * 14 13 11 37 37 H 1.08999 * 109.47354 * 63.90096 * 14 13 11 38 38 H 0.96998 * 120.00001 * 185.03816 * 19 18 16 39 39 H 1.09003 * 117.49548 * 0.02562 * 24 15 14 40 40 H 1.08994 * 117.49629 * 145.01674 * 24 15 14 41 41 H 1.09007 * 117.49646 * 214.97701 * 25 15 14 42 42 H 1.09000 * 117.50335 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2122 1.2100 0.0000 4 6 3.5654 1.2061 -0.0057 5 7 4.2583 0.0345 -0.0016 6 6 3.5988 -1.1615 0.0035 7 6 2.1941 -1.1789 0.0041 8 7 4.2659 -2.3188 0.0071 9 6 5.5821 -2.3589 0.0070 10 6 6.3156 -1.1645 0.0024 11 6 7.7829 -1.1850 0.0028 12 8 8.3766 -2.2413 0.1156 13 7 8.4730 -0.0340 -0.1219 14 6 9.9315 -0.0652 -0.2550 15 6 10.4720 1.3660 -0.2819 16 6 9.8574 2.2735 -1.3161 17 1 9.6973 3.3176 -1.0915 18 6 9.4992 1.7707 -2.5489 19 7 9.8446 0.5472 -2.8857 20 14 8.5235 2.8273 -3.7409 21 1 9.4589 3.5945 -4.6023 22 1 7.6700 1.9573 -4.5893 23 1 7.6660 3.7703 -2.9788 24 6 11.9530 1.5681 0.0449 25 6 10.8817 1.9914 1.0529 26 6 5.6087 0.0623 -0.0021 27 8 6.2075 1.1236 -0.0057 28 1 -0.3633 0.0036 1.0277 29 1 -0.3634 0.8882 -0.5168 30 1 -0.3634 -0.8918 -0.5107 31 1 1.6755 2.1472 0.0008 32 1 4.1019 2.1434 -0.0090 33 1 1.6619 -2.1186 0.0070 34 1 6.0949 -3.3094 0.0095 35 1 8.0038 0.8150 -0.1236 36 1 10.3622 -0.6004 0.5913 37 1 10.2012 -0.5728 -1.1811 38 1 9.6569 0.2188 -3.7789 39 1 12.5424 0.6814 0.2785 40 1 12.4826 2.3577 -0.4881 41 1 10.7071 3.0596 1.1829 42 1 10.7659 1.3836 1.9503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431168121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:31 Heat of formation + Delta-G solvation = 37.376663 kcal Electronic energy + Delta-G solvation = -27816.884459 eV Core-core repulsion = 23957.130507 eV Total energy + Delta-G solvation = -3859.753952 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.82218 -39.26967 -38.01121 -37.50278 -36.43416 -34.97786 -32.71625 -32.03543 -31.81659 -30.69054 -28.82431 -25.99302 -25.27602 -24.92541 -23.66714 -23.40984 -21.14101 -20.32554 -19.30194 -18.91936 -18.25917 -17.84841 -16.76163 -16.72474 -15.82653 -15.68983 -15.23578 -14.89304 -14.70843 -14.46809 -14.32321 -13.95382 -13.81149 -13.54211 -13.24874 -13.14585 -12.95552 -12.56328 -12.44865 -12.33289 -12.22542 -11.61728 -11.34820 -10.98357 -10.70019 -10.57887 -10.43696 -10.41041 -10.16591 -10.08729 -9.66991 -9.54513 -9.04624 -8.91512 -8.70244 -8.11393 -7.90676 -7.52373 -5.94232 -4.04469 -0.22649 0.26773 1.87885 1.90154 2.24855 3.27080 3.33910 3.36437 3.38479 3.65696 3.97096 4.06998 4.19539 4.21588 4.37056 4.41927 4.55831 4.70367 4.89545 4.99420 5.07252 5.16033 5.19994 5.29144 5.43709 5.59022 5.61507 5.70051 5.78883 6.03682 6.15069 6.23982 6.29352 6.44508 6.70599 6.74406 6.85920 7.01661 7.23330 7.38641 7.58329 7.61808 7.69213 7.85127 8.04977 8.44966 8.82990 8.98581 9.43878 9.56028 11.02019 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.004129 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.164489 B = 6779.791226 C = 7663.162497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.003 3.997 3 C -0.172 4.172 4 C 0.112 3.888 5 N -0.426 5.426 6 C 0.397 3.603 7 C -0.147 4.147 8 N -0.549 5.549 9 C 0.244 3.756 10 C -0.336 4.336 11 C 0.569 3.431 12 O -0.576 6.576 13 N -0.674 5.674 14 C 0.159 3.841 15 C 0.040 3.960 16 C -0.492 4.492 17 H 0.060 0.940 18 C 0.077 3.923 19 N -0.870 5.870 20 Si 0.888 3.112 21 H -0.280 1.280 22 H -0.287 1.287 23 H -0.272 1.272 24 C -0.196 4.196 25 C -0.212 4.212 26 C 0.517 3.483 27 O -0.497 6.497 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.080 0.920 31 H 0.160 0.840 32 H 0.187 0.813 33 H 0.167 0.833 34 H 0.185 0.815 35 H 0.414 0.586 36 H 0.025 0.975 37 H 0.109 0.891 38 H 0.261 0.739 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.025 -1.058 5.613 22.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.004 4.004 3 C -0.193 4.193 4 C -0.012 4.012 5 N -0.128 5.128 6 C 0.157 3.843 7 C -0.167 4.167 8 N -0.273 5.273 9 C 0.092 3.908 10 C -0.347 4.347 11 C 0.354 3.646 12 O -0.460 6.460 13 N -0.328 5.328 14 C 0.036 3.964 15 C 0.039 3.961 16 C -0.529 4.529 17 H 0.078 0.922 18 C -0.127 4.127 19 N -0.506 5.506 20 Si 0.716 3.284 21 H -0.206 1.206 22 H -0.213 1.213 23 H -0.197 1.197 24 C -0.234 4.234 25 C -0.249 4.249 26 C 0.322 3.678 27 O -0.372 6.372 28 H 0.105 0.895 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.178 0.822 32 H 0.204 0.796 33 H 0.184 0.816 34 H 0.202 0.798 35 H 0.259 0.741 36 H 0.044 0.956 37 H 0.127 0.873 38 H 0.072 0.928 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.093 0.907 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.465 -2.002 5.520 22.253 hybrid contribution -0.104 1.721 -0.751 1.881 sum -21.569 -0.281 4.769 22.091 Atomic orbital electron populations 1.20961 0.88889 1.04291 1.03709 1.20337 0.97767 0.92199 0.90051 1.20959 0.92138 0.99816 1.06397 1.22531 0.93664 0.91225 0.93747 1.44496 1.10585 1.07551 1.50193 1.20726 0.94178 0.80274 0.89140 1.20817 0.88761 1.00357 1.06760 1.68919 1.10044 1.20300 1.28028 1.23292 0.87621 0.98966 0.80922 1.21761 0.97156 0.91772 1.24049 1.17013 0.84555 0.84903 0.78136 1.90707 1.69995 1.31006 1.54319 1.46247 1.08980 1.09107 1.68460 1.21037 0.78058 0.96314 1.01012 1.19166 0.92079 0.92942 0.91889 1.20458 1.40281 0.94709 0.97441 0.92195 1.24926 0.95063 0.94709 0.97979 1.69836 1.45855 1.15691 1.19246 0.86633 0.80482 0.80335 0.80950 1.20604 1.21320 1.19665 1.22914 0.94471 1.01546 1.04496 1.22938 1.08043 0.99761 0.94205 1.17492 0.79051 0.91930 0.79372 1.90808 1.63949 1.31859 1.50633 0.89458 0.90204 0.90128 0.82243 0.79598 0.81600 0.79846 0.74108 0.95634 0.87345 0.92842 0.91499 0.90244 0.90705 0.91426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.32 10.02 36.00 0.36 0.04 16 2 C 0.00 0.02 5.88 -104.59 -0.62 -0.60 16 3 C -0.17 -1.13 9.69 -39.94 -0.39 -1.52 16 4 C 0.11 1.16 10.07 -16.69 -0.17 0.99 16 5 N -0.43 -5.95 2.76 -64.90 -0.18 -6.13 16 6 C 0.40 4.99 7.32 -155.81 -1.14 3.85 16 7 C -0.15 -1.21 9.60 -39.38 -0.38 -1.59 16 8 N -0.55 -7.82 10.28 -11.96 -0.12 -7.95 16 9 C 0.24 4.01 10.83 -16.89 -0.18 3.83 16 10 C -0.34 -6.66 5.93 -104.46 -0.62 -7.28 16 11 C 0.57 13.66 7.72 -12.83 -0.10 13.57 16 12 O -0.58 -14.80 16.40 5.19 0.09 -14.72 16 13 N -0.67 -17.13 5.24 -61.60 -0.32 -17.45 16 14 C 0.16 4.21 4.76 -4.05 -0.02 4.19 16 15 C 0.04 1.04 1.99 -155.66 -0.31 0.73 16 16 C -0.49 -13.69 8.28 -34.44 -0.29 -13.98 16 17 H 0.06 1.67 7.83 -52.49 -0.41 1.26 16 18 C 0.08 2.15 5.19 -17.82 -0.09 2.06 16 19 N -0.87 -24.98 10.71 55.43 0.59 -24.39 16 20 Si 0.89 21.67 29.55 -169.99 -5.02 16.64 16 21 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 24 C -0.20 -4.64 9.96 -26.69 -0.27 -4.90 16 25 C -0.21 -4.90 9.92 -26.70 -0.26 -5.16 16 26 C 0.52 9.60 7.39 -14.85 -0.11 9.49 16 27 O -0.50 -10.50 13.35 5.04 0.07 -10.43 16 28 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 29 H 0.08 0.14 8.10 -51.93 -0.42 -0.29 16 30 H 0.08 0.16 8.09 -51.93 -0.42 -0.26 16 31 H 0.16 0.52 8.06 -52.49 -0.42 0.10 16 32 H 0.19 1.86 7.32 -52.49 -0.38 1.48 16 33 H 0.17 1.01 8.06 -52.49 -0.42 0.59 16 34 H 0.18 2.79 7.70 -52.49 -0.40 2.39 16 35 H 0.41 10.70 4.58 -40.82 -0.19 10.51 16 36 H 0.03 0.66 8.06 -51.93 -0.42 0.24 16 37 H 0.11 3.17 6.00 -51.93 -0.31 2.86 16 38 H 0.26 7.26 8.32 -40.82 -0.34 6.92 16 39 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 40 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 41 H 0.07 1.67 8.14 -51.92 -0.42 1.25 16 42 H 0.07 1.47 8.14 -51.93 -0.42 1.05 16 LS Contribution 356.98 15.07 5.38 5.38 Total: -1.00 -34.94 356.98 -9.15 -44.09 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: -5.05 Total: 11.24 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: -4.58 Total: 3.71 kcal Atomic # 7 Polarization: -55.88 SS G_CDS: -0.03 Total: -55.91 kcal Atomic # 8 Polarization: -25.30 SS G_CDS: 0.15 Total: -25.15 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -34.94 -9.15 -44.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431168121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.466 kcal (2) G-P(sol) polarization free energy of solvation -34.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds