Wall clock time and date at job start Tue Mar 31 2020 14:35:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.40049 * 120.23519 * 2 1 4 4 C 1.35324 * 120.07017 * 180.27973 * 3 2 1 5 5 N 1.36118 * 120.76258 * 359.51226 * 4 3 2 6 6 C 1.36580 * 120.52626 * 0.24153 * 5 4 3 7 7 C 1.36453 * 120.23669 * 179.80066 * 2 1 3 8 8 N 1.33577 * 121.16214 * 179.97438 * 6 5 4 9 9 C 1.31680 * 121.70875 * 0.05320 * 8 6 5 10 10 C 1.40167 * 119.80974 * 359.97402 * 9 8 6 11 11 C 1.46742 * 120.75528 * 179.97438 * 10 9 8 12 12 O 1.21699 * 119.99730 * 354.08632 * 11 10 9 13 13 N 1.34776 * 120.00453 * 174.08402 * 11 10 9 14 14 C 1.46492 * 120.00566 * 186.05366 * 13 11 10 15 15 C 1.53001 * 109.47449 * 183.90782 * 14 13 11 16 16 C 1.50693 * 115.54976 * 306.02672 * 15 14 13 17 17 H 1.07997 * 120.00296 * 144.07751 * 16 15 14 18 18 C 1.37880 * 119.99967 * 324.08834 * 16 15 14 19 19 N 1.31510 * 120.00152 * 351.41903 * 18 16 15 20 20 Si 1.86797 * 119.99990 * 171.42534 * 18 16 15 21 21 H 1.48501 * 109.47306 * 89.99560 * 20 18 16 22 22 H 1.48493 * 109.47280 * 209.99703 * 20 18 16 23 23 H 1.48510 * 109.47078 * 329.99567 * 20 18 16 24 24 C 1.53005 * 117.49927 * 160.35590 * 15 14 13 25 25 C 1.52995 * 117.49702 * 91.69866 * 15 14 13 26 26 C 1.35068 * 119.41744 * 180.26260 * 5 4 3 27 27 O 1.21861 * 120.61295 * 0.02562 * 26 5 4 28 28 H 1.09006 * 109.46836 * 270.19957 * 1 2 3 29 29 H 1.08997 * 109.47523 * 30.19270 * 1 2 3 30 30 H 1.09000 * 109.47452 * 150.20223 * 1 2 3 31 31 H 1.08001 * 119.96467 * 0.04919 * 3 2 1 32 32 H 1.07998 * 119.62168 * 179.79821 * 4 3 2 33 33 H 1.08001 * 120.23701 * 0.02562 * 7 2 1 34 34 H 1.08001 * 120.09359 * 180.02562 * 9 8 6 35 35 H 0.97007 * 119.99421 * 6.05259 * 13 11 10 36 36 H 1.09005 * 109.46935 * 303.90806 * 14 13 11 37 37 H 1.08999 * 109.47354 * 63.90096 * 14 13 11 38 38 H 0.96998 * 120.00001 * 185.03816 * 19 18 16 39 39 H 1.09003 * 117.49548 * 0.02562 * 24 15 14 40 40 H 1.08994 * 117.49629 * 145.01674 * 24 15 14 41 41 H 1.09007 * 117.49646 * 214.97701 * 25 15 14 42 42 H 1.09000 * 117.50335 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2122 1.2100 0.0000 4 6 3.5654 1.2061 -0.0057 5 7 4.2583 0.0345 -0.0016 6 6 3.5988 -1.1615 0.0035 7 6 2.1941 -1.1789 0.0041 8 7 4.2659 -2.3188 0.0071 9 6 5.5821 -2.3589 0.0070 10 6 6.3156 -1.1645 0.0024 11 6 7.7829 -1.1850 0.0028 12 8 8.3766 -2.2413 0.1156 13 7 8.4730 -0.0340 -0.1219 14 6 9.9315 -0.0652 -0.2550 15 6 10.4720 1.3660 -0.2819 16 6 9.8574 2.2735 -1.3161 17 1 9.6973 3.3176 -1.0915 18 6 9.4992 1.7707 -2.5489 19 7 9.8446 0.5472 -2.8857 20 14 8.5235 2.8273 -3.7409 21 1 9.4589 3.5945 -4.6023 22 1 7.6700 1.9573 -4.5893 23 1 7.6660 3.7703 -2.9788 24 6 11.9530 1.5681 0.0449 25 6 10.8817 1.9914 1.0529 26 6 5.6087 0.0623 -0.0021 27 8 6.2075 1.1236 -0.0057 28 1 -0.3633 0.0036 1.0277 29 1 -0.3634 0.8882 -0.5168 30 1 -0.3634 -0.8918 -0.5107 31 1 1.6755 2.1472 0.0008 32 1 4.1019 2.1434 -0.0090 33 1 1.6619 -2.1186 0.0070 34 1 6.0949 -3.3094 0.0095 35 1 8.0038 0.8150 -0.1236 36 1 10.3622 -0.6004 0.5913 37 1 10.2012 -0.5728 -1.1811 38 1 9.6569 0.2188 -3.7789 39 1 12.5424 0.6814 0.2785 40 1 12.4826 2.3577 -0.4881 41 1 10.7071 3.0596 1.1829 42 1 10.7659 1.3836 1.9503 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431168121.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:30 Heat of formation + Delta-G solvation = 14.491620 kcal Electronic energy + Delta-G solvation = -27817.876829 eV Core-core repulsion = 23957.130507 eV Total energy + Delta-G solvation = -3860.746322 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.90600 -40.72228 -39.49187 -38.75301 -38.21788 -35.93230 -34.61968 -34.13295 -32.89431 -31.58379 -29.72034 -27.87308 -27.14712 -25.98390 -24.76266 -24.39408 -23.02171 -21.84027 -21.18898 -20.21807 -19.58736 -18.85911 -18.46685 -17.91375 -17.44828 -16.91270 -16.76559 -16.39687 -15.95537 -15.85848 -15.67801 -15.45912 -15.01411 -14.94075 -14.83101 -14.34350 -14.08866 -13.68807 -13.61306 -13.48499 -13.27784 -13.12681 -12.94432 -12.69551 -12.68727 -12.37745 -12.10383 -11.79181 -11.48492 -11.42025 -11.24148 -11.07964 -10.80255 -10.71049 -10.66445 -10.12768 -9.64523 -8.96523 -8.04448 -6.21159 -1.20546 -0.62608 0.71938 0.84755 1.25834 1.32049 1.34229 1.44326 2.09429 2.35664 2.56587 2.73195 2.75104 2.98616 3.09295 3.32101 3.50190 3.61282 3.72969 3.93515 4.10035 4.18153 4.23515 4.27841 4.47974 4.54445 4.63512 4.73085 4.75408 4.80569 4.85477 4.89829 4.90272 5.08498 5.16880 5.19005 5.22967 5.27845 5.45719 5.47925 5.54268 5.88608 5.91192 6.31324 6.34297 6.44769 6.75609 7.05954 7.41072 7.57385 8.90024 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.004129 C = 0.003653 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.164489 B = 6779.791226 C = 7663.162497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.035 3.965 3 C -0.131 4.131 4 C 0.075 3.925 5 N -0.425 5.425 6 C 0.384 3.616 7 C -0.149 4.149 8 N -0.556 5.556 9 C 0.273 3.727 10 C -0.400 4.400 11 C 0.564 3.436 12 O -0.610 6.610 13 N -0.683 5.683 14 C 0.170 3.830 15 C 0.007 3.993 16 C -0.504 4.504 17 H 0.055 0.945 18 C 0.035 3.965 19 N -0.895 5.895 20 Si 0.944 3.056 21 H -0.269 1.269 22 H -0.290 1.290 23 H -0.267 1.267 24 C -0.188 4.188 25 C -0.191 4.191 26 C 0.518 3.482 27 O -0.538 6.538 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.094 0.906 31 H 0.207 0.793 32 H 0.183 0.817 33 H 0.194 0.806 34 H 0.187 0.813 35 H 0.411 0.589 36 H 0.020 0.980 37 H 0.075 0.925 38 H 0.258 0.742 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.153 0.268 5.902 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.028 3.972 3 C -0.151 4.151 4 C -0.048 4.048 5 N -0.124 5.124 6 C 0.149 3.851 7 C -0.169 4.169 8 N -0.280 5.280 9 C 0.115 3.885 10 C -0.412 4.412 11 C 0.352 3.648 12 O -0.496 6.496 13 N -0.338 5.338 14 C 0.046 3.954 15 C 0.006 3.994 16 C -0.541 4.541 17 H 0.073 0.927 18 C -0.166 4.166 19 N -0.532 5.532 20 Si 0.770 3.230 21 H -0.194 1.194 22 H -0.217 1.217 23 H -0.191 1.191 24 C -0.227 4.227 25 C -0.228 4.228 26 C 0.324 3.676 27 O -0.418 6.418 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.113 0.887 31 H 0.224 0.776 32 H 0.201 0.799 33 H 0.211 0.789 34 H 0.204 0.796 35 H 0.256 0.744 36 H 0.038 0.962 37 H 0.093 0.907 38 H 0.067 0.933 39 H 0.096 0.904 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -26.693 -0.628 5.819 27.327 hybrid contribution 1.009 1.356 -0.780 1.862 sum -25.684 0.728 5.039 26.184 Atomic orbital electron populations 1.21175 0.85154 1.06137 1.05406 1.20938 1.00027 0.90835 0.85367 1.21645 0.90307 1.02147 1.00980 1.22935 0.95263 0.90018 0.96583 1.44256 1.09257 1.09258 1.49612 1.21472 0.95736 0.79406 0.88528 1.21270 0.86393 1.02769 1.06503 1.68960 1.08499 1.21337 1.29174 1.23298 0.88467 0.97988 0.78778 1.21287 0.94865 0.93886 1.31146 1.17624 0.86540 0.83937 0.76659 1.90640 1.71383 1.31697 1.55912 1.46276 1.08409 1.09583 1.69553 1.20721 0.79307 0.96412 0.98926 1.19232 0.93763 0.92714 0.93692 1.20640 1.40693 0.94671 0.98138 0.92720 1.25574 0.95769 0.95741 0.99505 1.70004 1.46921 1.17043 1.19252 0.85751 0.79314 0.78904 0.79050 1.19410 1.21655 1.19132 1.22920 0.93507 1.01977 1.04267 1.22932 1.06200 1.00239 0.93435 1.17243 0.80630 0.90828 0.78945 1.90738 1.65288 1.32817 1.52969 0.87338 0.88074 0.88743 0.77568 0.79941 0.78892 0.79568 0.74416 0.96185 0.90714 0.93284 0.90392 0.90072 0.89788 0.90162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.26 10.02 71.24 0.71 0.97 16 2 C 0.03 0.21 5.88 -19.84 -0.12 0.10 16 3 C -0.13 -1.02 9.69 22.04 0.21 -0.81 16 4 C 0.08 1.41 10.07 83.36 0.84 2.25 16 5 N -0.42 -11.71 2.76 -477.22 -1.32 -13.03 16 6 C 0.38 9.07 7.32 133.85 0.98 10.05 16 7 C -0.15 -1.82 9.60 22.40 0.21 -1.61 16 8 N -0.56 -15.67 10.28 -191.74 -1.97 -17.65 16 9 C 0.27 9.42 10.83 85.18 0.92 10.34 16 10 C -0.40 -17.01 5.93 -19.76 -0.12 -17.13 16 11 C 0.56 29.30 7.72 86.47 0.67 29.97 16 12 O -0.61 -33.82 16.40 -4.35 -0.07 -33.89 16 13 N -0.68 -37.27 5.24 -467.02 -2.45 -39.72 16 14 C 0.17 9.59 4.76 86.38 0.41 10.01 16 15 C 0.01 0.36 1.99 -52.93 -0.11 0.25 16 16 C -0.50 -28.95 8.28 25.60 0.21 -28.74 16 17 H 0.05 3.11 7.83 -2.91 -0.02 3.09 16 18 C 0.04 2.03 5.19 84.66 0.44 2.47 16 19 N -0.90 -53.82 10.71 21.45 0.23 -53.59 16 20 Si 0.94 45.52 29.55 68.60 2.03 47.55 16 21 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 22 H -0.29 -14.02 7.11 99.48 0.71 -13.32 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 C -0.19 -9.03 9.96 30.62 0.30 -8.73 16 25 C -0.19 -8.87 9.92 30.62 0.30 -8.56 16 26 C 0.52 20.26 7.39 85.02 0.63 20.88 16 27 O -0.54 -24.24 13.35 -4.86 -0.06 -24.31 16 28 H 0.11 -0.45 8.14 -2.38 -0.02 -0.47 16 29 H 0.10 -0.48 8.10 -2.39 -0.02 -0.49 16 30 H 0.09 -0.30 8.09 -2.39 -0.02 -0.32 16 31 H 0.21 -0.19 8.06 -2.91 -0.02 -0.21 16 32 H 0.18 3.54 7.32 -2.91 -0.02 3.52 16 33 H 0.19 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.19 6.07 7.70 -2.91 -0.02 6.05 16 35 H 0.41 22.73 4.58 -92.70 -0.42 22.30 16 36 H 0.02 1.10 8.06 -2.38 -0.02 1.09 16 37 H 0.07 4.69 6.00 -2.39 -0.01 4.68 16 38 H 0.26 14.99 8.32 -92.71 -0.77 14.22 16 39 H 0.08 3.52 8.14 -2.39 -0.02 3.50 16 40 H 0.08 3.82 8.14 -2.39 -0.02 3.80 16 41 H 0.08 3.72 8.14 -2.38 -0.02 3.70 16 42 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -83.97 356.98 3.54 -80.42 By element: Atomic # 1 Polarization: 31.86 SS G_CDS: 0.64 Total: 32.50 kcal Atomic # 6 Polarization: 15.20 SS G_CDS: 6.51 Total: 21.71 kcal Atomic # 7 Polarization: -118.49 SS G_CDS: -5.50 Total: -123.99 kcal Atomic # 8 Polarization: -58.06 SS G_CDS: -0.14 Total: -58.20 kcal Atomic # 14 Polarization: 45.52 SS G_CDS: 2.03 Total: 47.55 kcal Total: -83.97 3.54 -80.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431168121.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.917 kcal (2) G-P(sol) polarization free energy of solvation -83.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds