Wall clock time and date at job start Tue Mar 31 2020 15:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30477 * 126.18417 * 2 1 4 4 N 1.28668 * 109.50954 * 179.71492 * 3 2 1 5 5 C 1.31269 * 109.23653 * 0.40660 * 4 3 2 6 6 C 1.47751 * 126.38143 * 179.86157 * 5 4 3 7 7 C 1.39707 * 119.99310 * 359.68821 * 6 5 4 8 8 C 1.37632 * 119.99783 * 179.97438 * 7 6 5 9 9 C 1.39719 * 119.99816 * 0.02682 * 8 7 6 10 10 C 1.47733 * 120.00415 * 180.02562 * 9 8 7 11 11 O 1.21568 * 119.99764 * 5.14584 * 10 9 8 12 12 N 1.34770 * 120.00537 * 185.15421 * 10 9 8 13 13 C 1.46496 * 120.00441 * 185.07374 * 12 10 9 14 14 C 1.52998 * 109.47461 * 184.99319 * 13 12 10 15 15 C 1.50699 * 115.54970 * 54.23459 * 14 13 12 16 16 H 1.08001 * 120.00320 * 215.58886 * 15 14 13 17 17 C 1.37883 * 119.99825 * 35.32375 * 15 14 13 18 18 N 1.31512 * 119.99944 * 355.78084 * 17 15 14 19 19 Si 1.86802 * 120.00060 * 175.78213 * 17 15 14 20 20 H 1.48504 * 109.46823 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47338 * 119.99717 * 19 17 15 22 22 H 1.48505 * 109.46681 * 240.00092 * 19 17 15 23 23 C 1.53001 * 117.50064 * 199.91189 * 14 13 12 24 24 C 1.53001 * 117.50022 * 268.56885 * 14 13 12 25 25 C 1.39730 * 119.99590 * 0.26741 * 9 8 7 26 26 C 1.37618 * 119.99630 * 359.42966 * 25 9 8 27 27 O 1.34337 * 126.18170 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47086 * 270.04444 * 1 2 3 29 29 H 1.09001 * 109.47454 * 30.04310 * 1 2 3 30 30 H 1.08998 * 109.47160 * 150.04543 * 1 2 3 31 31 H 1.07995 * 120.00182 * 0.02562 * 7 6 5 32 32 H 1.07994 * 119.99611 * 179.97438 * 8 7 6 33 33 H 0.97001 * 119.99887 * 5.06806 * 12 10 9 34 34 H 1.08997 * 109.47424 * 64.99073 * 13 12 10 35 35 H 1.09003 * 109.47131 * 304.99305 * 13 12 10 36 36 H 0.96998 * 119.99763 * 185.00640 * 18 17 15 37 37 H 1.09008 * 117.49843 * 215.00495 * 23 14 13 38 38 H 1.09003 * 117.49712 * 0.02562 * 23 14 13 39 39 H 1.09003 * 117.49418 * 359.97438 * 24 14 13 40 40 H 1.08997 * 117.50061 * 144.96772 * 24 14 13 41 41 H 1.08008 * 119.99764 * 179.72344 * 25 9 8 42 42 H 1.08007 * 119.99985 * 180.31560 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2772 1.0531 0.0000 4 7 3.5098 0.6839 0.0060 5 6 3.5685 -0.6274 0.0013 6 6 4.7960 -1.4498 0.0027 7 6 6.0497 -0.8332 0.0030 8 6 7.1932 -1.5991 0.0048 9 6 7.1002 -2.9932 0.0058 10 6 8.3276 -3.8155 0.0083 11 8 9.4160 -3.2825 0.1040 12 7 8.2407 -5.1563 -0.0956 13 6 9.4471 -5.9796 0.0185 14 6 9.0944 -7.4424 -0.2584 15 6 8.3917 -7.7055 -1.5653 16 1 7.6339 -8.4726 -1.6262 17 6 8.7124 -6.9631 -2.6821 18 7 9.5706 -5.9710 -2.5879 19 14 7.9280 -7.3664 -4.3287 20 1 7.0051 -8.5188 -4.1683 21 1 7.1685 -6.1877 -4.8172 22 1 8.9874 -7.7141 -5.3097 23 6 10.0637 -8.5114 0.2503 24 6 8.7104 -8.3152 0.9382 25 6 5.8463 -3.6097 -0.0007 26 6 4.7030 -2.8437 0.0038 27 8 2.3000 -1.0843 0.0005 28 1 -0.3633 0.0008 1.0277 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5131 31 1 6.1215 0.2444 0.0026 32 1 8.1623 -1.1225 0.0046 33 1 7.3794 -5.5764 -0.2458 34 1 9.8554 -5.8886 1.0250 35 1 10.1878 -5.6411 -0.7061 36 1 9.7416 -5.4032 -3.3556 37 1 10.1933 -9.4049 -0.3605 38 1 10.9525 -8.1725 0.7825 39 1 8.7096 -7.8473 1.9227 40 1 7.9494 -9.0794 0.7802 41 1 5.7744 -4.6874 -0.0044 42 1 3.7337 -3.3202 0.0039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000431179686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:12 Heat of formation + Delta-G solvation = 56.239715 kcal Electronic energy + Delta-G solvation = -26490.931990 eV Core-core repulsion = 22631.996002 eV Total energy + Delta-G solvation = -3858.935988 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.38093 -39.83191 -38.12036 -36.66808 -36.42417 -33.70897 -33.21486 -32.25882 -31.43655 -31.11190 -28.33597 -26.27662 -25.53287 -24.52307 -23.25919 -22.34103 -21.97516 -21.31041 -19.79175 -19.35146 -18.16346 -17.68393 -17.35215 -16.39769 -16.16031 -15.52206 -14.95336 -14.90373 -14.62816 -14.33544 -14.20335 -13.83536 -13.79420 -13.65037 -13.34149 -13.14338 -12.80198 -12.69187 -12.59493 -12.22783 -12.11088 -11.80556 -11.53077 -11.34686 -11.13940 -11.09475 -10.76449 -10.57217 -10.33960 -10.25976 -9.81476 -9.25409 -9.15762 -9.02570 -8.91723 -8.67464 -8.35704 -7.92665 -6.05229 -4.26035 0.12128 1.25652 1.30587 1.89600 2.18482 3.16661 3.24479 3.27899 3.29110 3.47027 3.90564 4.03390 4.11741 4.24856 4.48626 4.75002 4.79022 4.82499 4.87044 4.95536 5.04712 5.14649 5.18958 5.27732 5.39791 5.43335 5.49939 5.62984 5.86730 5.95748 6.14669 6.17537 6.23857 6.36592 6.46516 6.54805 6.63655 6.65630 6.83579 7.02615 7.19674 7.48641 7.56341 7.91213 8.01284 8.23911 8.44523 8.75847 9.03811 9.38178 10.83660 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.002833 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.122125 B = 9880.864282 C =10454.327792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.158 3.842 3 N -0.286 5.286 4 N -0.277 5.277 5 C 0.218 3.782 6 C -0.023 4.023 7 C -0.073 4.073 8 C -0.068 4.068 9 C -0.085 4.085 10 C 0.541 3.459 11 O -0.550 6.550 12 N -0.670 5.670 13 C 0.162 3.838 14 C 0.035 3.965 15 C -0.499 4.499 16 H 0.062 0.938 17 C 0.074 3.926 18 N -0.865 5.865 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.282 1.282 23 C -0.198 4.198 24 C -0.212 4.212 25 C -0.090 4.090 26 C -0.088 4.088 27 O -0.220 6.220 28 H 0.099 0.901 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.143 0.857 32 H 0.148 0.852 33 H 0.397 0.603 34 H 0.021 0.979 35 H 0.120 0.880 36 H 0.263 0.737 37 H 0.080 0.920 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.076 0.924 41 H 0.142 0.858 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.488 8.071 5.434 18.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.052 4.052 3 N -0.134 5.134 4 N -0.124 5.124 5 C 0.010 3.990 6 C -0.026 4.026 7 C -0.093 4.093 8 C -0.087 4.087 9 C -0.089 4.089 10 C 0.326 3.674 11 O -0.430 6.430 12 N -0.316 5.316 13 C 0.039 3.961 14 C 0.034 3.966 15 C -0.536 4.536 16 H 0.080 0.920 17 C -0.130 4.130 18 N -0.501 5.501 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.237 4.237 24 C -0.250 4.250 25 C -0.109 4.109 26 C -0.108 4.108 27 O -0.099 6.099 28 H 0.118 0.882 29 H 0.125 0.875 30 H 0.112 0.888 31 H 0.161 0.839 32 H 0.166 0.834 33 H 0.232 0.768 34 H 0.039 0.961 35 H 0.138 0.862 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.094 0.906 41 H 0.159 0.841 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -14.217 9.768 5.378 18.068 hybrid contribution -1.259 -1.747 -1.026 2.385 sum -15.476 8.022 4.352 17.966 Atomic orbital electron populations 1.20365 0.80045 1.05802 1.05293 1.28047 0.97821 0.79508 0.99867 1.74437 0.96093 1.25528 1.17360 1.74746 1.11899 1.08271 1.17500 1.25540 0.83421 0.90438 0.99552 1.17347 0.86632 0.91513 1.07063 1.21103 0.89700 1.00986 0.97466 1.21250 0.99104 0.92308 0.96033 1.20611 0.94174 0.94654 0.99492 1.17975 0.87890 0.82873 0.78642 1.90721 1.28322 1.72443 1.51550 1.45571 1.12377 1.04882 1.68799 1.21153 0.87788 0.88955 0.98171 1.19243 0.97269 0.88020 0.92065 1.20536 1.21337 1.20039 0.91726 0.92020 1.25009 0.94371 0.94820 0.98835 1.69851 1.32973 1.16719 1.30523 0.86528 0.79171 0.78396 0.83925 1.19728 1.20939 1.20807 1.22945 0.92016 1.03807 1.04906 1.22964 0.98896 1.05898 0.97216 1.21367 0.90988 1.00813 0.97709 1.21115 0.99525 0.91558 0.98602 1.84820 1.17189 1.38006 1.69926 0.88237 0.87474 0.88774 0.83912 0.83439 0.76772 0.96100 0.86211 0.92606 0.90177 0.91404 0.91317 0.90592 0.84079 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.00 0.38 0.12 16 2 C 0.16 1.62 8.47 -12.86 -0.11 1.51 16 3 N -0.29 -3.80 12.22 32.58 0.40 -3.40 16 4 N -0.28 -4.01 11.91 32.06 0.38 -3.63 16 5 C 0.22 2.88 7.98 -13.91 -0.11 2.77 16 6 C -0.02 -0.30 5.88 -104.91 -0.62 -0.92 16 7 C -0.07 -0.94 9.68 -39.25 -0.38 -1.32 16 8 C -0.07 -0.98 9.57 -39.25 -0.38 -1.36 16 9 C -0.09 -1.37 5.88 -104.91 -0.62 -1.99 16 10 C 0.54 10.86 7.75 -12.38 -0.10 10.77 16 11 O -0.55 -12.82 16.32 5.31 0.09 -12.74 16 12 N -0.67 -13.62 4.96 -61.29 -0.30 -13.92 16 13 C 0.16 3.67 4.62 -4.04 -0.02 3.65 16 14 C 0.03 0.78 2.04 -155.66 -0.32 0.46 16 15 C -0.50 -12.18 8.44 -34.44 -0.29 -12.47 16 16 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 17 C 0.07 1.85 5.31 -17.82 -0.09 1.75 16 18 N -0.86 -22.47 10.11 55.43 0.56 -21.91 16 19 Si 0.89 19.67 29.54 -169.99 -5.02 14.65 16 20 H -0.27 -5.94 7.11 56.52 0.40 -5.53 16 21 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C -0.20 -4.16 9.96 -26.70 -0.27 -4.43 16 24 C -0.21 -4.19 9.92 -26.70 -0.26 -4.46 16 25 C -0.09 -1.21 9.50 -39.25 -0.37 -1.59 16 26 C -0.09 -1.06 9.70 -39.26 -0.38 -1.44 16 27 O -0.22 -2.58 10.65 4.16 0.04 -2.53 16 28 H 0.10 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.11 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.14 1.64 7.85 -52.49 -0.41 1.23 16 32 H 0.15 2.10 7.65 -52.49 -0.40 1.70 16 33 H 0.40 7.47 6.19 -40.82 -0.25 7.22 16 34 H 0.02 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 3.14 5.89 -51.93 -0.31 2.83 16 36 H 0.26 6.76 8.32 -40.82 -0.34 6.42 16 37 H 0.08 1.69 8.14 -51.92 -0.42 1.26 16 38 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.46 8.14 -51.93 -0.42 1.03 16 41 H 0.14 1.73 6.45 -52.48 -0.34 1.39 16 42 H 0.14 1.32 7.92 -52.48 -0.42 0.91 16 LS Contribution 365.43 15.07 5.51 5.51 Total: -1.00 -30.40 365.43 -7.33 -37.73 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.05 Total: 9.17 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: -3.93 Total: -8.92 kcal Atomic # 7 Polarization: -43.90 SS G_CDS: 1.04 Total: -42.86 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.13 Total: -15.27 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -30.40 -7.33 -37.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431179686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.972 kcal (2) G-P(sol) polarization free energy of solvation -30.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.732 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds