Wall clock time and date at job start Tue Mar 31 2020 15:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.30477 * 126.18417 * 2 1 4 4 N 1.28668 * 109.50954 * 179.71492 * 3 2 1 5 5 C 1.31269 * 109.23653 * 0.40660 * 4 3 2 6 6 C 1.47751 * 126.38143 * 179.86157 * 5 4 3 7 7 C 1.39707 * 119.99310 * 359.68821 * 6 5 4 8 8 C 1.37632 * 119.99783 * 179.97438 * 7 6 5 9 9 C 1.39719 * 119.99816 * 0.02682 * 8 7 6 10 10 C 1.47733 * 120.00415 * 180.02562 * 9 8 7 11 11 O 1.21568 * 119.99764 * 5.14584 * 10 9 8 12 12 N 1.34770 * 120.00537 * 185.15421 * 10 9 8 13 13 C 1.46496 * 120.00441 * 185.07374 * 12 10 9 14 14 C 1.52998 * 109.47461 * 184.99319 * 13 12 10 15 15 C 1.50699 * 115.54970 * 54.23459 * 14 13 12 16 16 H 1.08001 * 120.00320 * 215.58886 * 15 14 13 17 17 C 1.37883 * 119.99825 * 35.32375 * 15 14 13 18 18 N 1.31512 * 119.99944 * 355.78084 * 17 15 14 19 19 Si 1.86802 * 120.00060 * 175.78213 * 17 15 14 20 20 H 1.48504 * 109.46823 * 359.97438 * 19 17 15 21 21 H 1.48491 * 109.47338 * 119.99717 * 19 17 15 22 22 H 1.48505 * 109.46681 * 240.00092 * 19 17 15 23 23 C 1.53001 * 117.50064 * 199.91189 * 14 13 12 24 24 C 1.53001 * 117.50022 * 268.56885 * 14 13 12 25 25 C 1.39730 * 119.99590 * 0.26741 * 9 8 7 26 26 C 1.37618 * 119.99630 * 359.42966 * 25 9 8 27 27 O 1.34337 * 126.18170 * 179.97438 * 2 1 3 28 28 H 1.09000 * 109.47086 * 270.04444 * 1 2 3 29 29 H 1.09001 * 109.47454 * 30.04310 * 1 2 3 30 30 H 1.08998 * 109.47160 * 150.04543 * 1 2 3 31 31 H 1.07995 * 120.00182 * 0.02562 * 7 6 5 32 32 H 1.07994 * 119.99611 * 179.97438 * 8 7 6 33 33 H 0.97001 * 119.99887 * 5.06806 * 12 10 9 34 34 H 1.08997 * 109.47424 * 64.99073 * 13 12 10 35 35 H 1.09003 * 109.47131 * 304.99305 * 13 12 10 36 36 H 0.96998 * 119.99763 * 185.00640 * 18 17 15 37 37 H 1.09008 * 117.49843 * 215.00495 * 23 14 13 38 38 H 1.09003 * 117.49712 * 0.02562 * 23 14 13 39 39 H 1.09003 * 117.49418 * 359.97438 * 24 14 13 40 40 H 1.08997 * 117.50061 * 144.96772 * 24 14 13 41 41 H 1.08008 * 119.99764 * 179.72344 * 25 9 8 42 42 H 1.08007 * 119.99985 * 180.31560 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2772 1.0531 0.0000 4 7 3.5098 0.6839 0.0060 5 6 3.5685 -0.6274 0.0013 6 6 4.7960 -1.4498 0.0027 7 6 6.0497 -0.8332 0.0030 8 6 7.1932 -1.5991 0.0048 9 6 7.1002 -2.9932 0.0058 10 6 8.3276 -3.8155 0.0083 11 8 9.4160 -3.2825 0.1040 12 7 8.2407 -5.1563 -0.0956 13 6 9.4471 -5.9796 0.0185 14 6 9.0944 -7.4424 -0.2584 15 6 8.3917 -7.7055 -1.5653 16 1 7.6339 -8.4726 -1.6262 17 6 8.7124 -6.9631 -2.6821 18 7 9.5706 -5.9710 -2.5879 19 14 7.9280 -7.3664 -4.3287 20 1 7.0051 -8.5188 -4.1683 21 1 7.1685 -6.1877 -4.8172 22 1 8.9874 -7.7141 -5.3097 23 6 10.0637 -8.5114 0.2503 24 6 8.7104 -8.3152 0.9382 25 6 5.8463 -3.6097 -0.0007 26 6 4.7030 -2.8437 0.0038 27 8 2.3000 -1.0843 0.0005 28 1 -0.3633 0.0008 1.0277 29 1 -0.3634 0.8896 -0.5145 30 1 -0.3633 -0.8904 -0.5131 31 1 6.1215 0.2444 0.0026 32 1 8.1623 -1.1225 0.0046 33 1 7.3794 -5.5764 -0.2458 34 1 9.8554 -5.8886 1.0250 35 1 10.1878 -5.6411 -0.7061 36 1 9.7416 -5.4032 -3.3556 37 1 10.1933 -9.4049 -0.3605 38 1 10.9525 -8.1725 0.7825 39 1 8.7096 -7.8473 1.9227 40 1 7.9494 -9.0794 0.7802 41 1 5.7744 -4.6874 -0.0044 42 1 3.7337 -3.3202 0.0039 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431179686.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:12 Heat of formation + Delta-G solvation = 35.083747 kcal Electronic energy + Delta-G solvation = -26491.849382 eV Core-core repulsion = 22631.996002 eV Total energy + Delta-G solvation = -3859.853380 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.28871 -41.15429 -39.52148 -38.34926 -37.35022 -34.98906 -34.46198 -34.10890 -32.36115 -32.19889 -29.22570 -27.87007 -27.26744 -25.71175 -24.18837 -23.45288 -22.97453 -22.90192 -21.25193 -21.09297 -19.35932 -18.65876 -18.58437 -17.82514 -17.38779 -16.84670 -16.72620 -15.97714 -15.90712 -15.88141 -15.38640 -15.24847 -14.83195 -14.67078 -14.29199 -14.21003 -13.85272 -13.73287 -13.60731 -13.50266 -13.36410 -13.32240 -13.05515 -12.93580 -12.54731 -12.34690 -12.26587 -12.06043 -12.01401 -11.55467 -11.27744 -10.96129 -10.81521 -10.63817 -10.19432 -10.14918 -9.83216 -9.54629 -7.92776 -6.18954 -0.92146 0.21865 0.34756 1.04374 1.20421 1.40733 1.47566 1.55244 1.96504 2.40170 2.44362 2.63838 2.79321 3.08214 3.26137 3.60293 3.65850 3.77478 3.84910 3.91982 4.09944 4.13981 4.29047 4.31794 4.37636 4.55098 4.57244 4.57787 4.70797 4.76739 4.82648 4.87258 4.98978 5.04207 5.07194 5.10808 5.15849 5.25204 5.35190 5.54917 5.57797 5.62756 5.85960 6.01378 6.38502 6.77952 6.94336 7.09540 7.46150 7.47879 8.92615 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015313 B = 0.002833 C = 0.002678 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.122125 B = 9880.864282 C =10454.327792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.178 3.822 3 N -0.325 5.325 4 N -0.299 5.299 5 C 0.206 3.794 6 C -0.017 4.017 7 C -0.069 4.069 8 C -0.070 4.070 9 C -0.109 4.109 10 C 0.539 3.461 11 O -0.593 6.593 12 N -0.667 5.667 13 C 0.172 3.828 14 C 0.007 3.993 15 C -0.502 4.502 16 H 0.061 0.939 17 C 0.036 3.964 18 N -0.889 5.889 19 Si 0.946 3.054 20 H -0.264 1.264 21 H -0.284 1.284 22 H -0.291 1.291 23 C -0.202 4.202 24 C -0.183 4.183 25 C -0.083 4.083 26 C -0.077 4.077 27 O -0.220 6.220 28 H 0.123 0.877 29 H 0.121 0.879 30 H 0.116 0.884 31 H 0.154 0.846 32 H 0.141 0.859 33 H 0.405 0.595 34 H 0.021 0.979 35 H 0.082 0.918 36 H 0.255 0.745 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.154 0.846 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.898 7.479 5.871 21.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.032 4.032 3 N -0.172 5.172 4 N -0.146 5.146 5 C -0.002 4.002 6 C -0.019 4.019 7 C -0.089 4.089 8 C -0.089 4.089 9 C -0.113 4.113 10 C 0.326 3.674 11 O -0.476 6.476 12 N -0.313 5.313 13 C 0.048 3.952 14 C 0.006 3.994 15 C -0.539 4.539 16 H 0.079 0.921 17 C -0.166 4.166 18 N -0.526 5.526 19 Si 0.773 3.227 20 H -0.188 1.188 21 H -0.210 1.210 22 H -0.218 1.218 23 C -0.241 4.241 24 C -0.221 4.221 25 C -0.101 4.101 26 C -0.096 4.096 27 O -0.100 6.100 28 H 0.141 0.859 29 H 0.140 0.860 30 H 0.135 0.865 31 H 0.171 0.829 32 H 0.159 0.841 33 H 0.241 0.759 34 H 0.039 0.961 35 H 0.100 0.900 36 H 0.065 0.935 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.105 0.895 40 H 0.104 0.896 41 H 0.172 0.828 42 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -17.666 9.168 5.821 20.737 hybrid contribution -0.332 -1.527 -1.122 1.924 sum -17.999 7.641 4.699 20.110 Atomic orbital electron populations 1.20800 0.75959 1.07587 1.07242 1.29223 0.99461 0.78390 0.96137 1.74401 0.96044 1.26905 1.19888 1.74674 1.13029 1.09034 1.17827 1.25445 0.84022 0.90211 1.00534 1.17470 0.86571 0.92015 1.05866 1.21135 0.89296 1.01381 0.97059 1.21209 0.99516 0.91914 0.96283 1.20336 0.93376 0.94716 1.02859 1.18562 0.88758 0.82853 0.77225 1.90684 1.30371 1.73111 1.53448 1.45466 1.11972 1.05018 1.68858 1.20816 0.87963 0.89527 0.96886 1.19274 0.99029 0.88199 0.92913 1.20732 1.21044 1.19562 0.92561 0.92116 1.25576 0.94918 0.94818 1.01298 1.70052 1.34380 1.17593 1.30553 0.85692 0.78193 0.78209 0.80637 1.18803 1.21037 1.21779 1.22973 0.93057 1.02926 1.05113 1.22959 0.97901 1.04448 0.96744 1.21461 0.90259 1.01535 0.96874 1.21338 1.00161 0.91020 0.97108 1.84837 1.16696 1.38427 1.70031 0.85915 0.86038 0.86535 0.82863 0.84108 0.75898 0.96072 0.90008 0.93481 0.90498 0.90647 0.89547 0.89588 0.82838 0.81793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.30 10.51 71.23 0.75 0.45 16 2 C 0.18 3.18 8.47 88.31 0.75 3.93 16 3 N -0.33 -8.18 12.22 -165.33 -2.02 -10.21 16 4 N -0.30 -8.37 11.91 -166.31 -1.98 -10.35 16 5 C 0.21 5.12 7.98 87.29 0.70 5.82 16 6 C -0.02 -0.41 5.88 -20.05 -0.12 -0.53 16 7 C -0.07 -1.75 9.68 22.48 0.22 -1.53 16 8 C -0.07 -2.06 9.57 22.48 0.22 -1.84 16 9 C -0.11 -3.52 5.88 -20.05 -0.12 -3.63 16 10 C 0.54 22.26 7.75 86.75 0.67 22.93 16 11 O -0.59 -28.99 16.32 -3.93 -0.06 -29.05 16 12 N -0.67 -27.45 4.96 -466.10 -2.31 -29.76 16 13 C 0.17 7.94 4.62 86.38 0.40 8.34 16 14 C 0.01 0.29 2.04 -52.93 -0.11 0.18 16 15 C -0.50 -24.18 8.44 25.60 0.22 -23.97 16 16 H 0.06 2.89 7.82 -2.91 -0.02 2.87 16 17 C 0.04 1.77 5.31 84.66 0.45 2.22 16 18 N -0.89 -47.32 10.11 21.45 0.22 -47.11 16 19 Si 0.95 40.32 29.54 68.60 2.03 42.35 16 20 H -0.26 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 22 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 23 C -0.20 -8.30 9.96 30.62 0.30 -7.99 16 24 C -0.18 -6.85 9.92 30.62 0.30 -6.55 16 25 C -0.08 -2.11 9.50 22.48 0.21 -1.89 16 26 C -0.08 -1.66 9.70 22.48 0.22 -1.45 16 27 O -0.22 -4.58 10.65 -8.05 -0.09 -4.67 16 28 H 0.12 0.18 8.14 -2.39 -0.02 0.16 16 29 H 0.12 0.35 8.14 -2.39 -0.02 0.33 16 30 H 0.12 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.15 3.48 7.85 -2.91 -0.02 3.46 16 32 H 0.14 4.24 7.65 -2.91 -0.02 4.21 16 33 H 0.40 15.09 6.19 -92.71 -0.57 14.51 16 34 H 0.02 0.95 8.09 -2.39 -0.02 0.93 16 35 H 0.08 4.47 5.89 -2.39 -0.01 4.46 16 36 H 0.26 13.54 8.32 -92.71 -0.77 12.76 16 37 H 0.08 3.17 8.14 -2.38 -0.02 3.15 16 38 H 0.08 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 40 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 41 H 0.15 3.47 6.45 -2.91 -0.02 3.45 16 42 H 0.16 2.60 7.92 -2.91 -0.02 2.57 16 Total: -1.00 -67.26 365.43 1.34 -65.93 By element: Atomic # 1 Polarization: 27.89 SS G_CDS: 0.50 Total: 28.39 kcal Atomic # 6 Polarization: -10.58 SS G_CDS: 5.06 Total: -5.52 kcal Atomic # 7 Polarization: -91.33 SS G_CDS: -6.10 Total: -97.43 kcal Atomic # 8 Polarization: -33.57 SS G_CDS: -0.15 Total: -33.72 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Total: -67.26 1.34 -65.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431179686.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.011 kcal (2) G-P(sol) polarization free energy of solvation -67.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds