Wall clock time and date at job start Tue Mar 31 2020 14:41:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38225 * 119.61932 * 2 1 4 4 C 1.38619 * 119.16063 * 179.70673 * 3 2 1 5 5 C 1.50700 * 120.79052 * 180.28020 * 4 3 2 6 6 C 1.38678 * 118.42165 * 0.51905 * 4 3 2 7 7 C 1.50700 * 120.41991 * 179.78243 * 6 4 3 8 8 N 1.46500 * 109.47412 * 79.72034 * 7 6 4 9 9 S 1.65593 * 119.99925 * 164.99847 * 8 7 6 10 10 O 1.42096 * 106.40460 * 311.46213 * 9 8 7 11 11 O 1.42108 * 106.40218 * 178.54273 * 9 8 7 12 12 N 1.65606 * 107.21842 * 65.00539 * 9 8 7 13 13 C 1.46497 * 119.99739 * 269.99739 * 12 9 8 14 14 C 1.46497 * 120.00188 * 89.99816 * 12 9 8 15 15 H 1.09007 * 109.47078 * 359.97438 * 14 12 9 16 16 C 1.53000 * 109.47021 * 240.00233 * 14 12 9 17 17 C 1.50694 * 109.47115 * 120.00014 * 14 12 9 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.38176 * 119.16114 * 359.51008 * 6 4 3 26 26 N 1.31856 * 119.61686 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46806 * 270.01777 * 1 2 3 28 28 H 1.08996 * 109.47643 * 30.01061 * 1 2 3 29 29 H 1.08992 * 109.47302 * 150.01881 * 1 2 3 30 30 H 1.08004 * 120.41472 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47173 * 270.24511 * 5 4 3 32 32 H 1.08998 * 109.47627 * 30.24750 * 5 4 3 33 33 H 1.09002 * 109.47616 * 150.24359 * 5 4 3 34 34 H 1.09006 * 109.46596 * 319.71946 * 7 6 4 35 35 H 1.09004 * 109.47086 * 199.72246 * 7 6 4 36 36 H 0.97005 * 119.99538 * 345.00608 * 8 7 6 37 37 H 1.09001 * 109.46905 * 270.00036 * 13 12 9 38 38 H 1.09005 * 109.47144 * 29.99977 * 13 12 9 39 39 H 1.08993 * 109.47302 * 150.00165 * 13 12 9 40 40 H 1.09002 * 109.47106 * 299.99878 * 16 14 12 41 41 H 1.08998 * 109.47089 * 59.99825 * 16 14 12 42 42 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.61764 * 180.25244 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5763 1.1905 0.0062 5 6 4.3581 2.4789 0.0127 6 6 4.2266 -0.0343 0.0011 7 6 5.7322 -0.0989 0.0026 8 7 6.2292 0.1200 1.3633 9 16 7.7960 -0.2577 1.7432 10 8 8.0250 -1.5685 1.2449 11 8 7.9749 0.0974 3.1075 12 7 8.7707 0.7533 0.8653 13 6 9.2272 0.3548 -0.4684 14 6 9.1763 2.0460 1.4225 15 1 8.7424 2.1661 2.4152 16 6 8.6826 3.1716 0.5112 17 6 10.6790 2.1016 1.5204 18 1 11.2726 1.2581 1.2001 19 6 11.2961 3.2289 2.0199 20 7 10.5733 4.2558 2.4104 21 14 13.1589 3.2974 2.1419 22 1 13.5877 2.7789 3.4658 23 1 13.7563 2.4650 1.0671 24 1 13.6134 4.7030 1.9900 25 6 3.4766 -1.1948 0.0005 26 7 2.1587 -1.1463 0.0005 27 1 -0.3633 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5140 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6507 2.1373 0.0004 31 1 4.5474 2.7942 -1.0133 32 1 3.7853 3.2489 0.5296 33 1 5.3070 2.3256 0.5267 34 1 6.1295 0.6720 -0.6578 35 1 6.0542 -1.0793 -0.3485 36 1 5.6402 0.4860 2.0416 37 1 10.1710 -0.1838 -0.3835 38 1 8.4805 -0.2913 -0.9301 39 1 9.3698 1.2428 -1.0840 40 1 9.1160 3.0517 -0.4817 41 1 7.5956 3.1313 0.4404 42 1 8.9839 4.1334 0.9260 43 1 11.0074 5.0487 2.7622 44 1 3.9754 -2.1527 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452047513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:27 Heat of formation + Delta-G solvation = -49.541412 kcal Electronic energy + Delta-G solvation = -26649.386220 eV Core-core repulsion = 22921.307169 eV Total energy + Delta-G solvation = -3728.079051 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.64896 -36.74429 -36.28484 -36.00205 -35.25369 -33.60742 -32.63101 -32.57576 -29.14577 -28.79957 -27.72453 -25.64151 -25.17073 -24.92881 -22.95067 -20.86892 -20.75713 -18.90038 -17.45104 -17.08266 -16.84590 -16.62896 -15.97763 -15.69118 -15.21550 -14.91093 -14.66507 -14.28324 -13.78591 -13.51394 -13.48235 -13.22478 -13.19529 -12.92197 -12.81756 -12.52330 -12.41525 -12.37243 -12.05797 -11.82956 -11.76341 -11.52344 -11.37918 -11.28848 -11.22156 -10.99431 -10.83934 -10.50159 -10.29873 -10.05362 -9.71987 -9.59623 -9.35638 -9.26451 -9.03045 -8.47592 -8.01316 -6.09843 -4.16082 0.77945 1.07215 1.26273 3.27851 3.34430 3.36303 3.39773 3.65914 4.07818 4.11746 4.38574 4.42787 4.49492 4.65437 4.77645 4.98150 5.09069 5.20900 5.22197 5.27389 5.31318 5.39458 5.44476 5.47875 5.54931 5.61615 5.74860 5.88928 5.91740 5.98878 6.09684 6.21638 6.33612 6.54677 6.59044 6.72385 6.75094 6.96946 7.07618 7.44399 7.60586 7.76228 7.82046 8.01185 8.24972 8.86293 9.49902 10.95878 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.003345 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.980241 B = 8368.006083 C = 9021.561729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C 0.129 3.871 3 C -0.177 4.177 4 C -0.018 4.018 5 C -0.128 4.128 6 C -0.156 4.156 7 C 0.168 3.832 8 N -1.130 6.130 9 S 2.779 3.221 10 O -0.995 6.995 11 O -0.972 6.972 12 N -0.989 5.989 13 C 0.108 3.892 14 C 0.268 3.732 15 H 0.059 0.941 16 C -0.148 4.148 17 C -0.520 4.520 18 H 0.062 0.938 19 C 0.063 3.937 20 N -0.891 5.891 21 Si 0.898 3.102 22 H -0.280 1.280 23 H -0.274 1.274 24 H -0.286 1.286 25 C 0.124 3.876 26 N -0.492 5.492 27 H 0.077 0.923 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.134 0.866 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.086 0.914 36 H 0.412 0.588 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.010 0.990 42 H 0.093 0.907 43 H 0.263 0.737 44 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.802 -3.824 -7.900 18.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.008 4.008 3 C -0.197 4.197 4 C -0.026 4.026 5 C -0.185 4.185 6 C -0.159 4.159 7 C 0.041 3.959 8 N -0.889 5.889 9 S 2.787 3.213 10 O -0.978 6.978 11 O -0.956 6.956 12 N -0.832 5.832 13 C -0.038 4.038 14 C 0.166 3.834 15 H 0.076 0.924 16 C -0.207 4.207 17 C -0.559 4.559 18 H 0.081 0.919 19 C -0.139 4.139 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.206 1.206 23 H -0.199 1.199 24 H -0.212 1.212 25 C -0.034 4.034 26 N -0.202 5.202 27 H 0.096 0.904 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.152 0.848 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.104 0.896 36 H 0.245 0.755 37 H 0.068 0.932 38 H 0.066 0.934 39 H 0.091 0.909 40 H 0.053 0.947 41 H 0.029 0.971 42 H 0.111 0.889 43 H 0.073 0.927 44 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -16.837 -5.184 -7.363 19.094 hybrid contribution 1.148 1.407 0.102 1.819 sum -15.689 -3.778 -7.260 17.696 Atomic orbital electron populations 1.20709 0.88917 1.03369 1.03084 1.21323 0.97005 0.88407 0.94095 1.21848 0.94063 0.99322 1.04481 1.20314 0.93735 0.95506 0.93077 1.20993 1.00841 0.93233 1.03417 1.20759 0.96520 0.93908 1.04740 1.19969 0.89521 1.02451 0.83965 1.56345 1.31956 1.82701 1.17867 1.01997 0.72433 0.73414 0.73408 1.93538 1.84933 1.37497 1.81837 1.93622 1.84770 1.84283 1.32940 1.57697 1.62652 1.34399 1.28490 1.21175 0.98922 0.99912 0.83837 1.18726 0.95657 0.76191 0.92870 0.92361 1.22126 0.95627 1.03503 0.99447 1.21335 0.90987 1.01145 1.42455 0.91942 1.24905 0.98523 0.95474 0.94977 1.69854 1.35169 1.05354 1.42570 0.86500 0.85178 0.77135 0.78614 1.20560 1.19879 1.21198 1.22736 0.89101 0.98053 0.93485 1.67564 1.09727 1.29266 1.13613 0.90407 0.90771 0.90498 0.84806 0.90116 0.90831 0.89629 0.90559 0.89577 0.75477 0.93185 0.93376 0.90918 0.94748 0.97068 0.88892 0.92712 0.82424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 10.17 36.01 0.37 -0.38 16 2 C 0.13 1.35 6.78 -82.58 -0.56 0.79 16 3 C -0.18 -1.72 9.45 -39.45 -0.37 -2.09 16 4 C -0.02 -0.19 5.92 -104.32 -0.62 -0.81 16 5 C -0.13 -1.24 9.36 36.01 0.34 -0.90 16 6 C -0.16 -1.76 5.29 -104.48 -0.55 -2.31 16 7 C 0.17 1.97 5.54 -5.19 -0.03 1.95 16 8 N -1.13 -15.90 5.47 -11.65 -0.06 -15.97 16 9 S 2.78 52.26 6.09 -107.50 -0.66 51.61 16 10 O -0.99 -19.90 16.68 -57.17 -0.95 -20.85 16 11 O -0.97 -22.20 16.70 -57.17 -0.95 -23.16 16 12 N -0.99 -19.46 3.12 -115.86 -0.36 -19.82 16 13 C 0.11 1.81 9.53 59.85 0.57 2.38 16 14 C 0.27 6.30 2.62 -69.09 -0.18 6.12 16 15 H 0.06 1.53 6.91 -51.92 -0.36 1.17 16 16 C -0.15 -3.14 8.95 37.16 0.33 -2.81 16 17 C -0.52 -13.69 8.37 -34.44 -0.29 -13.98 16 18 H 0.06 1.65 7.65 -52.49 -0.40 1.25 16 19 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 20 N -0.89 -24.30 11.32 55.43 0.63 -23.68 16 21 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 25 C 0.12 1.43 10.83 -17.55 -0.19 1.24 16 26 N -0.49 -5.99 10.27 -9.47 -0.10 -6.09 16 27 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 31 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 33 H 0.08 0.95 6.53 -51.93 -0.34 0.61 16 34 H 0.08 0.83 7.40 -51.93 -0.38 0.44 16 35 H 0.09 0.97 7.63 -51.93 -0.40 0.57 16 36 H 0.41 5.37 8.64 -34.47 -0.30 5.07 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 38 H 0.05 0.66 7.79 -51.93 -0.40 0.25 16 39 H 0.07 1.17 6.43 -51.93 -0.33 0.83 16 40 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 41 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.09 2.24 6.07 -51.93 -0.32 1.92 16 43 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.16 1.58 8.04 -52.49 -0.42 1.16 16 LS Contribution 371.64 15.07 5.60 5.60 Total: -1.00 -32.64 371.64 -9.67 -42.31 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -6.51 Total: 3.38 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -1.28 Total: -9.21 kcal Atomic # 7 Polarization: -65.66 SS G_CDS: 0.10 Total: -65.56 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -1.91 Total: -44.01 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 52.26 SS G_CDS: -0.66 Total: 51.61 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -32.64 -9.67 -42.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452047513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.229 kcal (2) G-P(sol) polarization free energy of solvation -32.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds