Wall clock time and date at job start Tue Mar 31 2020 14:41:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38225 * 119.61932 * 2 1 4 4 C 1.38619 * 119.16063 * 179.70673 * 3 2 1 5 5 C 1.50700 * 120.79052 * 180.28020 * 4 3 2 6 6 C 1.38678 * 118.42165 * 0.51905 * 4 3 2 7 7 C 1.50700 * 120.41991 * 179.78243 * 6 4 3 8 8 N 1.46500 * 109.47412 * 79.72034 * 7 6 4 9 9 S 1.65593 * 119.99925 * 164.99847 * 8 7 6 10 10 O 1.42096 * 106.40460 * 311.46213 * 9 8 7 11 11 O 1.42108 * 106.40218 * 178.54273 * 9 8 7 12 12 N 1.65606 * 107.21842 * 65.00539 * 9 8 7 13 13 C 1.46497 * 119.99739 * 269.99739 * 12 9 8 14 14 C 1.46497 * 120.00188 * 89.99816 * 12 9 8 15 15 H 1.09007 * 109.47078 * 359.97438 * 14 12 9 16 16 C 1.53000 * 109.47021 * 240.00233 * 14 12 9 17 17 C 1.50694 * 109.47115 * 120.00014 * 14 12 9 18 18 H 1.08000 * 120.00563 * 359.97438 * 17 14 12 19 19 C 1.37885 * 119.99902 * 180.02562 * 17 14 12 20 20 N 1.31516 * 119.99913 * 359.97438 * 19 17 14 21 21 Si 1.86798 * 119.99766 * 179.97438 * 19 17 14 22 22 H 1.48500 * 109.47353 * 269.99586 * 21 19 17 23 23 H 1.48501 * 109.47293 * 30.00037 * 21 19 17 24 24 H 1.48504 * 109.46680 * 149.99835 * 21 19 17 25 25 C 1.38176 * 119.16114 * 359.51008 * 6 4 3 26 26 N 1.31856 * 119.61686 * 179.97438 * 2 1 3 27 27 H 1.09004 * 109.46806 * 270.01777 * 1 2 3 28 28 H 1.08996 * 109.47643 * 30.01061 * 1 2 3 29 29 H 1.08992 * 109.47302 * 150.01881 * 1 2 3 30 30 H 1.08004 * 120.41472 * 0.02562 * 3 2 1 31 31 H 1.09001 * 109.47173 * 270.24511 * 5 4 3 32 32 H 1.08998 * 109.47627 * 30.24750 * 5 4 3 33 33 H 1.09002 * 109.47616 * 150.24359 * 5 4 3 34 34 H 1.09006 * 109.46596 * 319.71946 * 7 6 4 35 35 H 1.09004 * 109.47086 * 199.72246 * 7 6 4 36 36 H 0.97005 * 119.99538 * 345.00608 * 8 7 6 37 37 H 1.09001 * 109.46905 * 270.00036 * 13 12 9 38 38 H 1.09005 * 109.47144 * 29.99977 * 13 12 9 39 39 H 1.08993 * 109.47302 * 150.00165 * 13 12 9 40 40 H 1.09002 * 109.47106 * 299.99878 * 16 14 12 41 41 H 1.08998 * 109.47089 * 59.99825 * 16 14 12 42 42 H 1.08995 * 109.47131 * 179.97438 * 16 14 12 43 43 H 0.97001 * 119.99646 * 179.97438 * 20 19 17 44 44 H 1.07997 * 119.61764 * 180.25244 * 25 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1902 1.2016 0.0000 4 6 3.5763 1.1905 0.0062 5 6 4.3581 2.4789 0.0127 6 6 4.2266 -0.0343 0.0011 7 6 5.7322 -0.0989 0.0026 8 7 6.2292 0.1200 1.3633 9 16 7.7960 -0.2577 1.7432 10 8 8.0250 -1.5685 1.2449 11 8 7.9749 0.0974 3.1075 12 7 8.7707 0.7533 0.8653 13 6 9.2272 0.3548 -0.4684 14 6 9.1763 2.0460 1.4225 15 1 8.7424 2.1661 2.4152 16 6 8.6826 3.1716 0.5112 17 6 10.6790 2.1016 1.5204 18 1 11.2726 1.2581 1.2001 19 6 11.2961 3.2289 2.0199 20 7 10.5733 4.2558 2.4104 21 14 13.1589 3.2974 2.1419 22 1 13.5877 2.7789 3.4658 23 1 13.7563 2.4650 1.0671 24 1 13.6134 4.7030 1.9900 25 6 3.4766 -1.1948 0.0005 26 7 2.1587 -1.1463 0.0005 27 1 -0.3633 0.0003 1.0277 28 1 -0.3634 0.8898 -0.5140 29 1 -0.3633 -0.8901 -0.5135 30 1 1.6507 2.1373 0.0004 31 1 4.5474 2.7942 -1.0133 32 1 3.7853 3.2489 0.5296 33 1 5.3070 2.3256 0.5267 34 1 6.1295 0.6720 -0.6578 35 1 6.0542 -1.0793 -0.3485 36 1 5.6402 0.4860 2.0416 37 1 10.1710 -0.1838 -0.3835 38 1 8.4805 -0.2913 -0.9301 39 1 9.3698 1.2428 -1.0840 40 1 9.1160 3.0517 -0.4817 41 1 7.5956 3.1313 0.4404 42 1 8.9839 4.1334 0.9260 43 1 11.0074 5.0487 2.7622 44 1 3.9754 -2.1527 0.0007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000452047513.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:26 Heat of formation + Delta-G solvation = -72.581439 kcal Electronic energy + Delta-G solvation = -26650.385311 eV Core-core repulsion = 22921.307169 eV Total energy + Delta-G solvation = -3729.078142 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.44592 -38.34162 -37.89214 -37.06483 -36.88263 -34.52117 -34.45739 -33.41274 -30.88441 -29.63959 -28.44403 -27.25282 -26.97240 -25.81812 -23.76172 -22.57741 -21.58214 -20.33680 -18.89378 -18.56324 -18.25477 -17.83364 -17.39457 -16.88642 -16.49292 -16.10613 -15.73271 -15.39584 -15.13138 -14.84252 -14.72780 -14.45287 -14.19166 -14.01756 -13.73151 -13.57933 -13.41781 -13.37638 -13.20504 -13.16628 -13.08816 -13.03248 -12.96505 -12.91491 -12.77431 -12.56974 -12.27622 -12.12618 -12.09199 -11.86019 -11.11981 -10.70143 -10.48766 -10.38774 -10.31268 -9.84489 -9.63156 -8.10537 -6.23151 -0.40735 0.13557 0.29150 1.42385 1.45076 1.53348 2.06417 2.44111 2.61413 2.81416 3.18151 3.33060 3.46642 3.67393 3.71518 3.89389 3.96746 4.08529 4.30789 4.46026 4.57215 4.61562 4.70254 4.72208 4.75990 4.77012 4.81790 4.87085 4.92729 5.02261 5.08691 5.12466 5.18481 5.19481 5.23088 5.29683 5.42789 5.64411 5.72483 5.79276 5.91115 6.01318 6.19969 6.33868 6.84530 7.02605 7.45659 8.93330 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.022467 B = 0.003345 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.980241 B = 8368.006083 C = 9021.561729 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.119 3.881 3 C -0.177 4.177 4 C -0.022 4.022 5 C -0.127 4.127 6 C -0.163 4.163 7 C 0.164 3.836 8 N -1.115 6.115 9 S 2.797 3.203 10 O -1.007 7.007 11 O -1.018 7.018 12 N -0.994 5.994 13 C 0.101 3.899 14 C 0.274 3.726 15 H 0.024 0.976 16 C -0.135 4.135 17 C -0.538 4.538 18 H 0.055 0.945 19 C 0.019 3.981 20 N -0.912 5.912 21 Si 0.951 3.049 22 H -0.284 1.284 23 H -0.267 1.267 24 H -0.279 1.279 25 C 0.112 3.888 26 N -0.517 5.517 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.073 0.927 30 H 0.160 0.840 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.419 0.581 37 H 0.039 0.961 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.044 0.956 41 H 0.041 0.959 42 H 0.064 0.936 43 H 0.264 0.736 44 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.996 -3.438 -9.343 20.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.019 4.019 3 C -0.197 4.197 4 C -0.031 4.031 5 C -0.184 4.184 6 C -0.167 4.167 7 C 0.038 3.962 8 N -0.877 5.877 9 S 2.806 3.194 10 O -0.991 6.991 11 O -1.002 7.002 12 N -0.836 5.836 13 C -0.045 4.045 14 C 0.169 3.831 15 H 0.042 0.958 16 C -0.194 4.194 17 C -0.578 4.578 18 H 0.073 0.927 19 C -0.181 4.181 20 N -0.552 5.552 21 Si 0.777 3.223 22 H -0.211 1.211 23 H -0.192 1.192 24 H -0.204 1.204 25 C -0.045 4.045 26 N -0.227 5.227 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.092 0.908 30 H 0.178 0.822 31 H 0.111 0.889 32 H 0.104 0.896 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.111 0.889 36 H 0.253 0.747 37 H 0.058 0.942 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -18.027 -4.811 -8.822 20.638 hybrid contribution 1.397 1.240 0.528 1.941 sum -16.630 -3.571 -8.294 18.923 Atomic orbital electron populations 1.20795 0.86857 1.04375 1.03859 1.21885 0.98527 0.88260 0.93188 1.22136 0.93833 1.00190 1.03520 1.20509 0.94354 0.95530 0.92663 1.21006 1.00088 0.93147 1.04118 1.20669 0.95894 0.94291 1.05849 1.20177 0.90171 1.03373 0.82446 1.55896 1.30027 1.82442 1.19351 1.01212 0.73104 0.72917 0.72144 1.93516 1.85644 1.38117 1.81774 1.93556 1.85892 1.84804 1.35946 1.57546 1.63550 1.33038 1.29501 1.21395 0.99614 1.00837 0.82641 1.18398 0.94003 0.78516 0.92145 0.95778 1.21909 0.97623 1.00888 0.98982 1.21674 0.92803 1.00890 1.42386 0.92700 1.25588 1.02214 0.95381 0.94910 1.69965 1.36457 1.05669 1.43062 0.85664 0.80905 0.77410 0.78287 1.21062 1.19182 1.20419 1.22927 0.89298 0.98632 0.93674 1.67600 1.10020 1.30442 1.14639 0.89618 0.88509 0.90781 0.82241 0.88930 0.89596 0.91187 0.89126 0.88933 0.74659 0.94234 0.89960 0.90067 0.93737 0.93992 0.91686 0.92693 0.81775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.24 10.17 71.24 0.72 -0.51 16 2 C 0.12 2.25 6.78 42.55 0.29 2.53 16 3 C -0.18 -2.98 9.45 22.36 0.21 -2.77 16 4 C -0.02 -0.42 5.92 -19.67 -0.12 -0.53 16 5 C -0.13 -2.13 9.36 71.24 0.67 -1.47 16 6 C -0.16 -3.41 5.29 -19.77 -0.10 -3.52 16 7 C 0.16 3.56 5.54 85.63 0.47 4.03 16 8 N -1.12 -30.24 5.47 -190.78 -1.04 -31.28 16 9 S 2.80 104.51 6.09 -56.49 -0.34 104.17 16 10 O -1.01 -39.55 16.68 -128.00 -2.14 -41.68 16 11 O -1.02 -47.52 16.70 -128.00 -2.14 -49.66 16 12 N -0.99 -38.54 3.12 -520.46 -1.62 -40.16 16 13 C 0.10 3.22 9.53 127.77 1.22 4.43 16 14 C 0.27 12.89 2.62 44.24 0.12 13.01 16 15 H 0.02 1.31 6.91 -2.38 -0.02 1.29 16 16 C -0.13 -5.61 8.95 71.98 0.64 -4.97 16 17 C -0.54 -28.57 8.37 25.60 0.21 -28.35 16 18 H 0.05 2.92 7.65 -2.91 -0.02 2.90 16 19 C 0.02 1.02 5.30 84.66 0.45 1.47 16 20 N -0.91 -50.25 11.32 21.45 0.24 -50.01 16 21 Si 0.95 42.87 29.54 68.60 2.03 44.89 16 22 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.44 16 25 C 0.11 2.47 10.83 84.67 0.92 3.39 16 26 N -0.52 -11.99 10.27 -183.89 -1.89 -13.88 16 27 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.10 0.73 8.08 -2.39 -0.02 0.71 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.22 8.10 -2.39 -0.02 1.20 16 33 H 0.07 1.41 6.53 -2.39 -0.02 1.39 16 34 H 0.09 1.73 7.40 -2.38 -0.02 1.71 16 35 H 0.09 1.90 7.63 -2.38 -0.02 1.88 16 36 H 0.42 10.60 8.64 -96.74 -0.84 9.77 16 37 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.08 2.04 7.79 -2.38 -0.02 2.02 16 39 H 0.08 2.45 6.43 -2.39 -0.02 2.43 16 40 H 0.04 1.72 6.66 -2.39 -0.02 1.71 16 41 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 3.11 6.07 -2.39 -0.01 3.10 16 43 H 0.26 13.85 8.31 -92.71 -0.77 13.08 16 44 H 0.17 3.18 8.04 -2.91 -0.02 3.16 16 Total: -1.00 -70.50 371.64 -1.03 -71.52 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.18 Total: 19.35 kcal Atomic # 6 Polarization: -18.96 SS G_CDS: 5.70 Total: -13.25 kcal Atomic # 7 Polarization: -131.02 SS G_CDS: -4.31 Total: -135.34 kcal Atomic # 8 Polarization: -87.07 SS G_CDS: -4.27 Total: -91.34 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 104.51 SS G_CDS: -0.34 Total: 104.17 kcal Total: -70.50 -1.03 -71.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452047513.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.057 kcal (2) G-P(sol) polarization free energy of solvation -70.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds