Wall clock time and date at job start Tue Mar 31 2020 15:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30169 * 126.80853 * 2 1 4 4 O 1.20895 * 111.74597 * 179.83379 * 3 2 1 5 5 C 1.34297 * 111.62863 * 0.44508 * 4 3 2 6 6 C 1.50698 * 126.82243 * 179.73306 * 5 4 3 7 7 C 1.53001 * 117.49531 * 8.62160 * 6 5 4 8 8 C 1.52998 * 117.49827 * 300.00114 * 6 5 4 9 9 C 1.35861 * 106.35168 * 359.73153 * 5 4 3 10 10 N 1.40771 * 128.05155 * 180.02562 * 9 5 4 11 11 C 1.34783 * 119.99619 * 139.43417 * 10 9 5 12 12 O 1.21605 * 119.99970 * 2.43753 * 11 10 9 13 13 N 1.34777 * 119.99701 * 182.44103 * 11 10 9 14 14 C 1.39943 * 119.99787 * 175.54639 * 13 11 10 15 15 C 1.39289 * 119.94830 * 145.72070 * 14 13 11 16 16 C 1.38488 * 120.43045 * 179.97438 * 15 14 13 17 17 C 1.37686 * 120.31757 * 359.97438 * 16 15 14 18 18 C 1.40742 * 119.88953 * 359.97438 * 17 16 15 19 19 C 1.41409 * 120.21265 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00015 * 29.66074 * 19 18 17 21 21 C 1.39934 * 119.99787 * 209.66494 * 19 18 17 22 22 N 1.30830 * 120.00197 * 10.06773 * 21 19 18 23 23 Si 1.86795 * 119.99696 * 190.06990 * 21 19 18 24 24 H 1.48510 * 109.47182 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47244 * 119.99815 * 23 21 19 26 26 H 1.48502 * 109.47370 * 240.00099 * 23 21 19 27 27 C 1.38235 * 119.94504 * 325.43986 * 14 13 11 28 28 H 1.09000 * 109.46885 * 273.85411 * 1 2 3 29 29 H 1.08992 * 109.46946 * 33.85508 * 1 2 3 30 30 H 1.09004 * 109.46734 * 153.85937 * 1 2 3 31 31 H 1.08994 * 115.54726 * 154.32600 * 6 5 4 32 32 H 1.08998 * 117.50265 * 359.97438 * 7 6 5 33 33 H 1.09005 * 117.49153 * 145.02390 * 7 6 5 34 34 H 1.09002 * 117.49918 * 214.98245 * 8 6 5 35 35 H 1.09006 * 117.50055 * 359.96998 * 8 6 5 36 36 H 0.96996 * 120.00472 * 319.43705 * 10 9 5 37 37 H 0.97003 * 119.99830 * 355.54205 * 13 11 10 38 38 H 1.08001 * 119.78511 * 359.97086 * 15 14 13 39 39 H 1.07997 * 119.84142 * 180.02562 * 16 15 14 40 40 H 1.07999 * 120.05564 * 179.97438 * 17 16 15 41 41 H 0.96998 * 119.99844 * 179.97438 * 22 21 19 42 42 H 1.08003 * 120.16375 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7280 0.0033 5 6 3.6079 -0.6061 -0.0038 6 6 4.9096 -1.3654 -0.0081 7 6 6.1959 -0.5633 0.1992 8 6 5.8614 -1.1290 -1.1825 9 6 2.3566 -1.1352 -0.0061 10 7 1.9891 -2.4941 -0.0126 11 6 0.9573 -2.9167 0.7446 12 8 0.3159 -2.1173 1.3991 13 7 0.6365 -4.2254 0.7765 14 6 -0.3736 -4.6775 1.6330 15 6 -1.1945 -5.7333 1.2437 16 6 -2.1968 -6.1891 2.0837 17 6 -2.3924 -5.6031 3.3142 18 6 -1.5700 -4.5360 3.7216 19 6 -1.7645 -3.9296 4.9841 20 1 -2.1574 -4.5087 5.8066 21 6 -1.4480 -2.5789 5.1677 22 7 -1.1614 -1.8280 4.1353 23 14 -1.4346 -1.8481 6.8867 24 1 -1.7903 -2.8988 7.8741 25 1 -0.0794 -1.3225 7.1906 26 1 -2.4229 -0.7422 6.9622 27 6 -0.5513 -4.0794 2.8665 28 1 -0.3633 0.0691 1.0254 29 1 -0.3633 0.8534 -0.5725 30 1 -0.3633 -0.9226 -0.4528 31 1 4.8692 -2.3700 0.4127 32 1 6.1007 0.5136 0.3383 33 1 7.0021 -1.0404 0.7566 34 1 6.4474 -1.9782 -1.5341 35 1 5.5458 -0.4247 -1.9522 36 1 2.4784 -3.1263 -0.5620 37 1 1.1057 -4.8538 0.2056 38 1 -1.0485 -6.1995 0.2805 39 1 -2.8275 -7.0086 1.7724 40 1 -3.1756 -5.9616 3.9657 41 1 -0.9424 -0.8917 4.2626 42 1 0.0873 -3.2634 3.1710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455902992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:42 Heat of formation + Delta-G solvation = 90.038399 kcal Electronic energy + Delta-G solvation = -27596.401246 eV Core-core repulsion = 23738.930878 eV Total energy + Delta-G solvation = -3857.470367 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.78335 -39.97981 -37.66949 -37.39868 -35.37309 -34.21792 -33.44541 -32.96656 -30.64668 -29.49700 -28.34806 -27.96747 -25.23131 -23.85115 -23.31196 -22.66137 -21.43789 -20.80071 -20.18243 -19.49940 -18.19593 -17.76378 -17.47142 -17.14697 -16.26224 -15.78417 -15.35146 -14.97880 -14.65156 -14.48787 -14.06036 -13.94375 -13.15272 -13.09437 -12.82398 -12.72336 -12.51131 -12.25113 -12.08805 -11.86435 -11.64862 -11.44954 -11.34352 -11.18353 -11.04653 -10.82037 -10.72512 -10.50671 -10.27829 -10.08994 -9.69728 -9.37803 -9.34696 -9.05339 -8.97961 -8.31929 -7.29855 -6.93026 -6.48429 -4.27791 1.41464 2.32187 2.56932 2.79842 2.99297 3.15792 3.19902 3.22985 3.27297 3.58630 3.76411 4.04150 4.18044 4.40626 4.50562 4.57992 4.66423 4.76603 4.90618 5.25994 5.32365 5.35886 5.60452 5.70854 5.72398 5.80712 5.83716 6.00237 6.14053 6.19039 6.42649 6.59663 6.65518 6.72466 6.75203 6.98722 7.18258 7.24516 7.40375 7.72299 7.85680 7.91318 8.12943 8.32113 8.40779 8.48192 8.67485 8.99684 9.02418 9.07987 10.36775 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003970 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.182805 B = 7051.977235 C = 8181.353150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.046 3.954 3 N -0.364 5.364 4 O 0.099 5.901 5 C -0.041 4.041 6 C -0.077 4.077 7 C -0.164 4.164 8 C -0.165 4.165 9 C 0.078 3.922 10 N -0.662 5.662 11 C 0.683 3.317 12 O -0.507 6.507 13 N -0.677 5.677 14 C 0.155 3.845 15 C -0.263 4.263 16 C -0.082 4.082 17 C -0.235 4.235 18 C 0.120 3.880 19 C -0.466 4.466 20 H 0.076 0.924 21 C 0.071 3.929 22 N -0.764 5.764 23 Si 0.902 3.098 24 H -0.262 1.262 25 H -0.275 1.275 26 H -0.275 1.275 27 C -0.149 4.149 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.075 0.925 31 H 0.133 0.867 32 H 0.104 0.896 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.099 0.901 36 H 0.403 0.597 37 H 0.392 0.608 38 H 0.087 0.913 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.278 0.722 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.865 0.416 -10.632 16.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.115 4.115 3 N -0.071 5.071 4 O 0.037 5.963 5 C -0.108 4.108 6 C -0.096 4.096 7 C -0.201 4.201 8 C -0.202 4.202 9 C -0.022 4.022 10 N -0.316 5.316 11 C 0.384 3.616 12 O -0.377 6.377 13 N -0.324 5.324 14 C 0.063 3.937 15 C -0.285 4.285 16 C -0.101 4.101 17 C -0.255 4.255 18 C 0.117 3.883 19 C -0.496 4.496 20 H 0.094 0.906 21 C -0.149 4.149 22 N -0.388 5.388 23 Si 0.727 3.273 24 H -0.186 1.186 25 H -0.200 1.200 26 H -0.201 1.201 27 C -0.171 4.171 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.151 0.849 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.118 0.882 36 H 0.239 0.761 37 H 0.225 0.775 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.090 0.910 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 12.084 2.737 -10.050 15.954 hybrid contribution 0.336 -1.120 0.141 1.178 sum 12.419 1.617 -9.910 15.971 Atomic orbital electron populations 1.20155 0.84843 1.01926 1.04682 1.23499 0.99416 0.87298 1.01256 1.73802 0.89020 1.23354 1.20974 1.84804 1.21572 1.20910 1.68988 1.22733 0.95201 0.84227 1.08656 1.20273 0.84688 0.98915 1.05737 1.23036 0.96942 1.00796 0.99362 1.23116 1.01491 1.03829 0.91810 1.17601 0.90788 0.85626 1.08205 1.41863 1.35699 1.05100 1.48955 1.16078 0.80901 0.83618 0.81046 1.91212 1.50886 1.52121 1.43469 1.42451 1.39504 1.06008 1.44412 1.17368 0.89666 0.96747 0.89887 1.19987 1.03020 1.04840 1.00628 1.20280 0.96724 0.98419 0.94689 1.21040 1.03053 1.04137 0.97238 1.17495 0.88524 0.89648 0.92630 1.19527 1.38661 0.94714 0.96703 0.90602 1.25921 0.93280 0.97574 0.98123 1.69883 1.31537 1.07108 1.30239 0.86364 0.78501 0.79388 0.83050 1.18606 1.20025 1.20079 1.21435 1.00711 1.03010 0.91924 0.88326 0.92155 0.90618 0.84933 0.87781 0.87726 0.87717 0.88231 0.76114 0.77495 0.89438 0.89153 0.89005 0.91044 0.84425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.02 8.55 36.01 0.31 -0.72 16 2 C 0.05 0.80 6.97 -81.94 -0.57 0.23 16 3 N -0.36 -6.21 12.06 33.56 0.40 -5.81 16 4 O 0.10 1.49 11.00 16.50 0.18 1.67 16 5 C -0.04 -0.55 6.97 -35.16 -0.24 -0.80 16 6 C -0.08 -0.72 6.27 -91.77 -0.58 -1.30 16 7 C -0.16 -1.28 10.18 -26.73 -0.27 -1.55 16 8 C -0.17 -1.16 10.23 -26.73 -0.27 -1.43 16 9 C 0.08 1.20 6.66 -83.24 -0.55 0.64 16 10 N -0.66 -9.33 5.48 -13.99 -0.08 -9.41 16 11 C 0.68 12.65 7.76 -86.91 -0.67 11.97 16 12 O -0.51 -11.63 10.36 5.27 0.05 -11.58 16 13 N -0.68 -11.97 5.34 -14.27 -0.08 -12.05 16 14 C 0.16 3.48 6.25 -83.76 -0.52 2.96 16 15 C -0.26 -5.60 9.97 -39.10 -0.39 -5.99 16 16 C -0.08 -1.81 10.02 -39.69 -0.40 -2.21 16 17 C -0.23 -5.76 9.79 -38.84 -0.38 -6.14 16 18 C 0.12 3.24 5.54 -106.85 -0.59 2.64 16 19 C -0.47 -12.62 9.06 -37.74 -0.34 -12.96 16 20 H 0.08 1.98 7.87 -52.49 -0.41 1.56 16 21 C 0.07 1.84 5.26 -17.34 -0.09 1.75 16 22 N -0.76 -20.75 10.88 55.55 0.60 -20.15 16 23 Si 0.90 19.58 29.57 -169.99 -5.03 14.56 16 24 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 25 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 C -0.15 -3.90 7.25 -38.68 -0.28 -4.18 16 28 H 0.10 1.98 7.47 -51.93 -0.39 1.59 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.07 1.35 7.11 -51.93 -0.37 0.98 16 31 H 0.13 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.10 0.87 8.02 -51.93 -0.42 0.45 16 33 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.40 4.01 8.84 -40.82 -0.36 3.65 16 37 H 0.39 5.18 8.83 -40.82 -0.36 4.82 16 38 H 0.09 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.09 1.71 8.06 -52.49 -0.42 1.28 16 40 H 0.09 2.13 8.06 -52.49 -0.42 1.70 16 41 H 0.28 7.16 8.30 -40.82 -0.34 6.82 16 42 H 0.14 3.88 4.69 -52.48 -0.25 3.64 16 LS Contribution 358.74 15.07 5.41 5.41 Total: -1.00 -31.67 358.74 -9.45 -41.12 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.07 Total: 13.30 kcal Atomic # 6 Polarization: -11.22 SS G_CDS: -5.86 Total: -17.07 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.86 Total: -47.41 kcal Atomic # 8 Polarization: -10.14 SS G_CDS: 0.24 Total: -9.90 kcal Atomic # 14 Polarization: 19.58 SS G_CDS: -5.03 Total: 14.56 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.67 -9.45 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455902992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.163 kcal (2) G-P(sol) polarization free energy of solvation -31.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds