Wall clock time and date at job start Tue Mar 31 2020 15:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30169 * 126.80853 * 2 1 4 4 O 1.20895 * 111.74597 * 179.83379 * 3 2 1 5 5 C 1.34297 * 111.62863 * 0.44508 * 4 3 2 6 6 C 1.50698 * 126.82243 * 179.73306 * 5 4 3 7 7 C 1.53001 * 117.49531 * 8.62160 * 6 5 4 8 8 C 1.52998 * 117.49827 * 300.00114 * 6 5 4 9 9 C 1.35861 * 106.35168 * 359.73153 * 5 4 3 10 10 N 1.40771 * 128.05155 * 180.02562 * 9 5 4 11 11 C 1.34783 * 119.99619 * 139.43417 * 10 9 5 12 12 O 1.21605 * 119.99970 * 2.43753 * 11 10 9 13 13 N 1.34777 * 119.99701 * 182.44103 * 11 10 9 14 14 C 1.39943 * 119.99787 * 175.54639 * 13 11 10 15 15 C 1.39289 * 119.94830 * 145.72070 * 14 13 11 16 16 C 1.38488 * 120.43045 * 179.97438 * 15 14 13 17 17 C 1.37686 * 120.31757 * 359.97438 * 16 15 14 18 18 C 1.40742 * 119.88953 * 359.97438 * 17 16 15 19 19 C 1.41409 * 120.21265 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00015 * 29.66074 * 19 18 17 21 21 C 1.39934 * 119.99787 * 209.66494 * 19 18 17 22 22 N 1.30830 * 120.00197 * 10.06773 * 21 19 18 23 23 Si 1.86795 * 119.99696 * 190.06990 * 21 19 18 24 24 H 1.48510 * 109.47182 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.47244 * 119.99815 * 23 21 19 26 26 H 1.48502 * 109.47370 * 240.00099 * 23 21 19 27 27 C 1.38235 * 119.94504 * 325.43986 * 14 13 11 28 28 H 1.09000 * 109.46885 * 273.85411 * 1 2 3 29 29 H 1.08992 * 109.46946 * 33.85508 * 1 2 3 30 30 H 1.09004 * 109.46734 * 153.85937 * 1 2 3 31 31 H 1.08994 * 115.54726 * 154.32600 * 6 5 4 32 32 H 1.08998 * 117.50265 * 359.97438 * 7 6 5 33 33 H 1.09005 * 117.49153 * 145.02390 * 7 6 5 34 34 H 1.09002 * 117.49918 * 214.98245 * 8 6 5 35 35 H 1.09006 * 117.50055 * 359.96998 * 8 6 5 36 36 H 0.96996 * 120.00472 * 319.43705 * 10 9 5 37 37 H 0.97003 * 119.99830 * 355.54205 * 13 11 10 38 38 H 1.08001 * 119.78511 * 359.97086 * 15 14 13 39 39 H 1.07997 * 119.84142 * 180.02562 * 16 15 14 40 40 H 1.07999 * 120.05564 * 179.97438 * 17 16 15 41 41 H 0.96998 * 119.99844 * 179.97438 * 22 21 19 42 42 H 1.08003 * 120.16375 * 0.02562 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2869 1.0422 0.0000 4 8 3.4543 0.7280 0.0033 5 6 3.6079 -0.6061 -0.0038 6 6 4.9096 -1.3654 -0.0081 7 6 6.1959 -0.5633 0.1992 8 6 5.8614 -1.1290 -1.1825 9 6 2.3566 -1.1352 -0.0061 10 7 1.9891 -2.4941 -0.0126 11 6 0.9573 -2.9167 0.7446 12 8 0.3159 -2.1173 1.3991 13 7 0.6365 -4.2254 0.7765 14 6 -0.3736 -4.6775 1.6330 15 6 -1.1945 -5.7333 1.2437 16 6 -2.1968 -6.1891 2.0837 17 6 -2.3924 -5.6031 3.3142 18 6 -1.5700 -4.5360 3.7216 19 6 -1.7645 -3.9296 4.9841 20 1 -2.1574 -4.5087 5.8066 21 6 -1.4480 -2.5789 5.1677 22 7 -1.1614 -1.8280 4.1353 23 14 -1.4346 -1.8481 6.8867 24 1 -1.7903 -2.8988 7.8741 25 1 -0.0794 -1.3225 7.1906 26 1 -2.4229 -0.7422 6.9622 27 6 -0.5513 -4.0794 2.8665 28 1 -0.3633 0.0691 1.0254 29 1 -0.3633 0.8534 -0.5725 30 1 -0.3633 -0.9226 -0.4528 31 1 4.8692 -2.3700 0.4127 32 1 6.1007 0.5136 0.3383 33 1 7.0021 -1.0404 0.7566 34 1 6.4474 -1.9782 -1.5341 35 1 5.5458 -0.4247 -1.9522 36 1 2.4784 -3.1263 -0.5620 37 1 1.1057 -4.8538 0.2056 38 1 -1.0485 -6.1995 0.2805 39 1 -2.8275 -7.0086 1.7724 40 1 -3.1756 -5.9616 3.9657 41 1 -0.9424 -0.8917 4.2626 42 1 0.0873 -3.2634 3.1710 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455902992.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:41 Heat of formation + Delta-G solvation = 70.938958 kcal Electronic energy + Delta-G solvation = -27597.229460 eV Core-core repulsion = 23738.930878 eV Total energy + Delta-G solvation = -3858.298581 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -46.03516 -41.47145 -39.21454 -38.28719 -36.76676 -35.90547 -35.05768 -34.46345 -31.89277 -31.35924 -29.84522 -29.53332 -27.15275 -24.85847 -24.62559 -23.27155 -23.05450 -22.47584 -21.61647 -20.76915 -19.77125 -19.14430 -18.70915 -18.63245 -17.56181 -17.09623 -16.78346 -16.48485 -16.20749 -16.09067 -15.53078 -15.02500 -14.81512 -14.57683 -14.28159 -14.16764 -14.05352 -13.79209 -13.45334 -13.15647 -12.97623 -12.82119 -12.67021 -12.54043 -12.40962 -12.30469 -12.21421 -11.86848 -11.60815 -11.49015 -11.32323 -11.14543 -10.88742 -10.68287 -10.58463 -9.49817 -9.19175 -8.70822 -8.36414 -6.28874 0.28906 0.91956 0.99870 1.14226 1.35041 1.43418 1.49264 1.49984 2.10124 2.22106 2.28043 2.86380 2.91912 3.08220 3.29468 3.35027 3.71731 3.80522 3.90926 4.05832 4.17419 4.46746 4.53591 4.54428 4.60613 4.72011 4.74869 4.81846 4.92684 4.99716 5.12451 5.14038 5.16772 5.26788 5.27194 5.29424 5.41210 5.46838 5.75360 5.91537 6.04818 6.16870 6.24485 6.49658 6.74418 7.02499 7.07393 7.11297 7.20446 7.64502 8.44399 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012165 B = 0.003970 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.182805 B = 7051.977235 C = 8181.353150 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 C 0.022 3.978 3 N -0.383 5.383 4 O 0.103 5.897 5 C -0.014 4.014 6 C -0.101 4.101 7 C -0.162 4.162 8 C -0.141 4.141 9 C 0.050 3.950 10 N -0.637 5.637 11 C 0.680 3.320 12 O -0.553 6.553 13 N -0.663 5.663 14 C 0.160 3.840 15 C -0.248 4.248 16 C -0.082 4.082 17 C -0.252 4.252 18 C 0.085 3.915 19 C -0.504 4.504 20 H 0.072 0.928 21 C 0.029 3.971 22 N -0.798 5.798 23 Si 0.971 3.029 24 H -0.254 1.254 25 H -0.273 1.273 26 H -0.270 1.270 27 C -0.175 4.175 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.147 0.853 32 H 0.095 0.905 33 H 0.125 0.875 34 H 0.133 0.867 35 H 0.096 0.904 36 H 0.426 0.574 37 H 0.417 0.583 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.095 0.905 41 H 0.275 0.725 42 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.967 -1.204 -12.448 19.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.138 4.138 3 N -0.091 5.091 4 O 0.040 5.960 5 C -0.081 4.081 6 C -0.120 4.120 7 C -0.199 4.199 8 C -0.178 4.178 9 C -0.050 4.050 10 N -0.292 5.292 11 C 0.381 3.619 12 O -0.426 6.426 13 N -0.312 5.312 14 C 0.066 3.934 15 C -0.270 4.270 16 C -0.100 4.100 17 C -0.273 4.273 18 C 0.083 3.917 19 C -0.535 4.535 20 H 0.090 0.910 21 C -0.187 4.187 22 N -0.423 5.423 23 Si 0.793 3.207 24 H -0.178 1.178 25 H -0.198 1.198 26 H -0.195 1.195 27 C -0.197 4.197 28 H 0.082 0.918 29 H 0.095 0.905 30 H 0.085 0.915 31 H 0.165 0.835 32 H 0.113 0.887 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.115 0.885 36 H 0.266 0.734 37 H 0.255 0.745 38 H 0.148 0.852 39 H 0.147 0.853 40 H 0.113 0.887 41 H 0.085 0.915 42 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 14.229 1.076 -11.927 18.598 hybrid contribution -0.212 -0.702 0.525 0.902 sum 14.017 0.375 -11.402 18.073 Atomic orbital electron populations 1.19909 0.85617 1.02154 1.02582 1.23606 0.99436 0.88503 1.02284 1.73774 0.89662 1.23726 1.21954 1.84774 1.20757 1.22002 1.68417 1.23422 0.96250 0.83345 1.05109 1.20551 0.83341 0.99239 1.08822 1.23169 0.96069 1.00321 1.00380 1.23235 0.99358 1.04294 0.90944 1.17680 0.91260 0.85624 1.10404 1.41375 1.34523 1.05088 1.48219 1.16257 0.81335 0.83415 0.80927 1.91221 1.52641 1.53340 1.45372 1.42148 1.38789 1.06356 1.43935 1.17446 0.90410 0.96290 0.89212 1.20470 1.01218 1.03444 1.01830 1.20718 0.97055 0.98811 0.93451 1.21249 1.03168 1.04044 0.98794 1.17862 0.89607 0.90974 0.93293 1.19741 1.40807 0.95627 0.97276 0.90974 1.26683 0.92578 0.97587 1.01852 1.70025 1.33143 1.06976 1.32113 0.85325 0.78421 0.78592 0.78376 1.17752 1.19849 1.19531 1.21285 1.01143 1.03396 0.93907 0.91815 0.90499 0.91457 0.83526 0.88672 0.85683 0.84903 0.88525 0.73404 0.74523 0.85178 0.85303 0.88655 0.91467 0.87170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.67 8.55 71.24 0.61 -1.06 16 2 C 0.02 0.77 6.97 43.68 0.30 1.07 16 3 N -0.38 -13.31 12.06 -48.97 -0.59 -13.90 16 4 O 0.10 3.05 11.00 69.21 0.76 3.81 16 5 C -0.01 -0.36 6.97 25.13 0.18 -0.19 16 6 C -0.10 -1.60 6.27 -11.54 -0.07 -1.68 16 7 C -0.16 -2.03 10.18 30.59 0.31 -1.71 16 8 C -0.14 -1.45 10.23 30.59 0.31 -1.13 16 9 C 0.05 1.53 6.66 38.03 0.25 1.78 16 10 N -0.64 -17.19 5.48 -316.41 -1.73 -18.93 16 11 C 0.68 25.09 7.76 179.05 1.39 26.48 16 12 O -0.55 -26.44 10.36 -4.05 -0.04 -26.48 16 13 N -0.66 -22.44 5.34 -317.31 -1.70 -24.13 16 14 C 0.16 7.04 6.25 38.10 0.24 7.28 16 15 C -0.25 -9.82 9.97 22.58 0.23 -9.59 16 16 C -0.08 -3.40 10.02 22.20 0.22 -3.18 16 17 C -0.25 -12.45 9.79 22.75 0.22 -12.23 16 18 C 0.09 4.77 5.54 -21.31 -0.12 4.65 16 19 C -0.50 -28.65 9.06 23.46 0.21 -28.44 16 20 H 0.07 3.95 7.87 -2.91 -0.02 3.93 16 21 C 0.03 1.56 5.26 85.25 0.45 2.01 16 22 N -0.80 -45.99 10.88 21.82 0.24 -45.75 16 23 Si 0.97 41.98 29.57 68.60 2.03 44.01 16 24 H -0.25 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 C -0.18 -9.44 7.25 22.85 0.17 -9.28 16 28 H 0.06 2.79 7.47 -2.39 -0.02 2.78 16 29 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.07 2.53 7.11 -2.38 -0.02 2.51 16 31 H 0.15 1.97 8.14 -2.39 -0.02 1.96 16 32 H 0.09 1.39 8.02 -2.39 -0.02 1.37 16 33 H 0.12 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.10 1.10 8.14 -2.38 -0.02 1.08 16 36 H 0.43 7.35 8.84 -92.71 -0.82 6.53 16 37 H 0.42 9.68 8.83 -92.71 -0.82 8.86 16 38 H 0.13 4.06 8.06 -2.91 -0.02 4.03 16 39 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 40 H 0.10 4.48 8.06 -2.91 -0.02 4.45 16 41 H 0.28 15.13 8.30 -92.71 -0.77 14.36 16 42 H 0.11 6.56 4.69 -2.91 -0.01 6.54 16 Total: -1.00 -74.35 358.74 3.32 -71.02 By element: Atomic # 1 Polarization: 36.12 SS G_CDS: -0.55 Total: 35.57 kcal Atomic # 6 Polarization: -30.12 SS G_CDS: 4.90 Total: -25.22 kcal Atomic # 7 Polarization: -98.93 SS G_CDS: -3.78 Total: -102.71 kcal Atomic # 8 Polarization: -23.40 SS G_CDS: 0.72 Total: -22.68 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -74.35 3.32 -71.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455902992.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.963 kcal (2) G-P(sol) polarization free energy of solvation -74.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.024 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds