Wall clock time and date at job start Tue Mar 31 2020 16:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47317 * 2 1 4 4 N 1.31982 * 122.71727 * 269.96111 * 3 2 1 5 5 C 1.29624 * 116.91989 * 180.02562 * 4 3 2 6 6 N 1.39001 * 124.94417 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99828 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00007 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99886 * 179.97438 * 7 6 5 10 10 N 1.46496 * 109.46927 * 180.02562 * 9 7 6 11 11 C 1.36943 * 119.99794 * 269.99602 * 10 9 7 12 12 H 1.08001 * 119.99780 * 142.13751 * 11 10 9 13 13 C 1.38810 * 120.00067 * 322.14203 * 11 10 9 14 14 N 1.31621 * 119.99886 * 159.55613 * 13 11 10 15 15 Si 1.86800 * 119.99910 * 339.55099 * 13 11 10 16 16 H 1.48501 * 109.46910 * 95.28963 * 15 13 11 17 17 H 1.48492 * 109.47364 * 215.28937 * 15 13 11 18 18 H 1.48495 * 109.47287 * 335.29203 * 15 13 11 19 19 C 1.46498 * 120.00641 * 89.99901 * 10 9 7 20 20 C 1.53002 * 109.47302 * 84.82815 * 19 10 9 21 21 O 1.42904 * 109.46416 * 63.50431 * 20 19 10 22 22 C 1.42905 * 113.99794 * 179.97438 * 21 20 19 23 23 S 1.70969 * 110.10994 * 359.72369 * 5 4 3 24 24 C 1.33452 * 122.71413 * 90.00332 * 3 2 1 25 25 C 1.50700 * 125.96648 * 359.95742 * 24 3 2 26 26 H 1.09003 * 109.46993 * 300.00487 * 1 2 3 27 27 H 1.09001 * 109.46757 * 59.99685 * 1 2 3 28 28 H 1.08991 * 109.47494 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47127 * 240.00041 * 2 1 3 30 30 H 1.09001 * 109.46757 * 120.00315 * 2 1 3 31 31 H 0.97000 * 120.00552 * 359.97438 * 6 5 4 32 32 H 1.09001 * 109.47044 * 299.99990 * 9 7 6 33 33 H 1.08995 * 109.46985 * 60.00068 * 9 7 6 34 34 H 0.96999 * 119.99454 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47940 * 204.83766 * 19 10 9 36 36 H 1.09002 * 109.47006 * 324.83655 * 19 10 9 37 37 H 1.08997 * 109.47178 * 183.49999 * 20 19 10 38 38 H 1.08997 * 109.47458 * 303.50851 * 20 19 10 39 39 H 1.09000 * 109.46860 * 60.00258 * 22 21 20 40 40 H 1.09002 * 109.47113 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.47079 * 300.00142 * 22 21 20 42 42 H 1.09003 * 109.46855 * 90.00810 * 25 24 3 43 43 H 1.08998 * 109.47493 * 330.00831 * 25 24 3 44 44 H 1.08996 * 109.46832 * 209.99974 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2709 2.0931 -1.1104 5 6 2.7012 3.3088 -0.9795 6 7 3.0039 4.1640 -2.0326 7 6 3.4453 5.4124 -1.7814 8 8 3.5787 5.7895 -0.6364 9 6 3.7740 6.3394 -2.9232 10 7 4.2294 7.6264 -2.3917 11 6 3.3243 8.6237 -2.1439 12 1 3.4444 9.2593 -1.2790 13 6 2.2524 8.8177 -3.0042 14 7 1.1861 9.4691 -2.5906 15 14 2.3233 8.1543 -4.7490 16 1 1.6597 6.8268 -4.8012 17 1 1.6255 9.0928 -5.6642 18 1 3.7409 8.0159 -5.1688 19 6 5.6530 7.8466 -2.1253 20 6 6.3495 8.2937 -3.4122 21 8 5.8138 9.5504 -3.8316 22 6 6.3996 10.0607 -5.0310 23 16 2.8343 3.7100 0.6771 24 6 2.2729 2.1008 1.1228 25 6 2.0894 1.5845 2.5267 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.8975 3.8624 -2.9484 32 1 4.5627 5.8991 -3.5332 33 1 2.8847 6.4926 -3.5344 34 1 0.4372 9.6049 -3.1920 35 1 5.7652 8.6187 -1.3642 36 1 6.1041 6.9195 -1.7715 37 1 7.4190 8.3976 -3.2292 38 1 6.1847 7.5501 -4.1918 39 1 6.2362 9.3538 -5.8444 40 1 5.9396 11.0166 -5.2819 41 1 7.4701 10.2013 -4.8813 42 1 3.0140 1.1169 2.8656 43 1 1.2842 0.8500 2.5415 44 1 1.8377 2.4131 3.1885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459533028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:56 Heat of formation + Delta-G solvation = -5.475949 kcal Electronic energy + Delta-G solvation = -26026.057037 eV Core-core repulsion = 22299.888808 eV Total energy + Delta-G solvation = -3726.168229 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.13770 -39.25554 -37.44356 -35.60693 -34.87227 -33.03624 -31.79192 -31.37946 -29.71927 -27.59869 -26.14869 -25.86222 -24.02275 -23.56247 -22.91881 -21.19515 -20.29867 -19.16653 -17.81817 -17.12361 -16.61519 -16.24675 -15.88676 -15.78301 -15.34480 -15.02994 -14.53642 -14.45290 -14.11687 -13.95343 -13.66186 -13.58333 -13.02758 -12.96936 -12.73431 -12.57260 -12.43390 -12.39671 -12.03863 -11.90606 -11.60542 -11.20730 -11.14771 -11.12765 -10.80482 -10.60392 -10.35501 -10.31274 -10.22308 -9.63988 -9.47346 -9.40663 -9.07497 -8.81557 -8.58580 -7.83228 -7.03388 -6.00503 -3.44327 1.02136 1.44105 2.16136 2.68805 2.95053 3.16555 3.28817 3.41670 3.45366 4.38942 4.45318 4.58109 4.81577 4.98645 5.10033 5.20972 5.27117 5.31931 5.35846 5.39863 5.53699 5.57098 5.65577 5.67467 5.75533 5.82093 5.84158 5.84561 5.86223 5.88454 5.99892 6.02162 6.13146 6.13889 6.18646 6.24985 6.57341 6.68947 7.24197 7.76143 7.96661 8.06557 8.32595 8.36334 8.87898 9.63559 9.94219 11.14874 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.003327 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.800733 B = 8413.248663 C = 8816.840627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.045 4.045 3 C 0.087 3.913 4 N -0.524 5.524 5 C 0.254 3.746 6 N -0.636 5.636 7 C 0.480 3.520 8 O -0.479 6.479 9 C 0.124 3.876 10 N -0.566 5.566 11 C -0.246 4.246 12 H 0.084 0.916 13 C 0.038 3.962 14 N -0.896 5.896 15 Si 0.869 3.131 16 H -0.291 1.291 17 H -0.298 1.298 18 H -0.260 1.260 19 C 0.151 3.849 20 C 0.041 3.959 21 O -0.355 6.355 22 C 0.030 3.970 23 S 0.241 5.759 24 C -0.303 4.303 25 C -0.064 4.064 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.417 0.583 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.263 0.737 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.035 0.965 38 H 0.035 0.965 39 H 0.030 0.970 40 H 0.079 0.921 41 H 0.030 0.970 42 H 0.067 0.933 43 H 0.071 0.929 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.893 -15.052 2.027 16.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.085 4.085 3 C -0.046 4.046 4 N -0.248 5.248 5 C -0.114 4.114 6 N -0.288 5.288 7 C 0.265 3.735 8 O -0.349 6.349 9 C -0.008 4.008 10 N -0.284 5.284 11 C -0.375 4.375 12 H 0.102 0.898 13 C -0.163 4.163 14 N -0.537 5.537 15 Si 0.700 3.300 16 H -0.220 1.220 17 H -0.226 1.226 18 H -0.184 1.184 19 C 0.025 3.975 20 C -0.038 4.038 21 O -0.272 6.272 22 C -0.067 4.067 23 S 0.493 5.507 24 C -0.426 4.426 25 C -0.123 4.123 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.254 0.746 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.086 0.914 43 H 0.090 0.910 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.998 -13.656 2.869 15.188 hybrid contribution -0.363 -1.472 -2.068 2.564 sum 5.635 -15.128 0.801 16.163 Atomic orbital electron populations 1.21705 0.94643 1.01479 1.02404 1.20046 0.95944 0.89739 1.02753 1.19579 1.01371 0.97598 0.86021 1.66189 1.21150 1.04976 1.32444 1.23553 1.00860 0.91765 0.95179 1.43855 1.64582 1.12500 1.07860 1.24137 0.75118 0.79570 0.94704 1.90556 1.49285 1.72422 1.22644 1.21500 1.00709 0.86366 0.92181 1.43734 1.02540 1.07052 1.75074 1.18710 1.03236 1.09008 1.06550 0.89811 1.25425 0.96262 0.97266 0.97307 1.69847 1.04671 1.43810 1.35331 0.87056 0.78409 0.76850 0.87702 1.21983 1.22561 1.18449 1.21066 0.83649 0.98836 0.93948 1.23321 0.95640 0.86008 0.98866 1.88198 1.62334 1.35986 1.40715 1.22662 0.96744 0.99110 0.88197 1.85089 1.61160 1.07949 0.96534 1.26114 1.14858 1.01089 1.00495 1.20056 1.01906 1.00664 0.89643 0.92639 0.92379 0.92338 0.90608 0.90577 0.74565 0.90299 0.89345 0.92682 0.91019 0.92594 0.94684 0.94721 0.95165 0.90269 0.95195 0.91413 0.91050 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.04 -0.49 5.86 -27.88 -0.16 -0.66 16 3 C 0.09 1.27 5.99 -84.20 -0.50 0.77 16 4 N -0.52 -8.78 10.58 -11.28 -0.12 -8.90 16 5 C 0.25 4.45 8.19 -87.35 -0.72 3.74 16 6 N -0.64 -10.78 5.40 -13.07 -0.07 -10.85 16 7 C 0.48 9.41 7.86 -10.98 -0.09 9.32 16 8 O -0.48 -10.68 13.90 5.55 0.08 -10.60 16 9 C 0.12 2.45 4.99 -5.20 -0.03 2.43 16 10 N -0.57 -12.77 1.51 -174.61 -0.26 -13.04 16 11 C -0.25 -6.74 9.63 -15.06 -0.14 -6.89 16 12 H 0.08 2.56 8.06 -52.49 -0.42 2.13 16 13 C 0.04 1.07 5.33 -17.43 -0.09 0.97 16 14 N -0.90 -27.20 13.97 55.49 0.78 -26.42 16 15 Si 0.87 21.06 24.92 -169.99 -4.24 16.82 16 16 H -0.29 -6.68 6.69 56.52 0.38 -6.30 16 17 H -0.30 -7.48 7.11 56.52 0.40 -7.08 16 18 H -0.26 -5.98 7.11 56.52 0.40 -5.58 16 19 C 0.15 2.86 6.08 -4.04 -0.02 2.83 16 20 C 0.04 0.70 6.29 37.16 0.23 0.93 16 21 O -0.35 -7.09 10.36 -35.23 -0.36 -7.45 16 22 C 0.03 0.47 11.01 101.05 1.11 1.58 16 23 S 0.24 4.07 20.22 -107.50 -2.17 1.89 16 24 C -0.30 -4.28 6.58 -35.98 -0.24 -4.52 16 25 C -0.06 -0.65 9.80 36.01 0.35 -0.30 16 26 H 0.05 0.55 7.98 -51.93 -0.41 0.13 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.08 0.68 7.34 -51.93 -0.38 0.30 16 31 H 0.42 5.87 8.82 -40.82 -0.36 5.51 16 32 H 0.08 1.25 8.07 -51.93 -0.42 0.83 16 33 H 0.09 1.90 3.15 -51.93 -0.16 1.74 16 34 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 35 H 0.07 1.42 8.00 -51.93 -0.42 1.01 16 36 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 37 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 41 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.62 7.25 -51.93 -0.38 0.24 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -33.64 375.78 -7.40 -41.04 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.76 Total: 2.72 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: 0.07 Total: 9.13 kcal Atomic # 7 Polarization: -59.53 SS G_CDS: 0.32 Total: -59.21 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: -0.29 Total: -18.06 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.24 Total: 16.82 kcal Atomic # 16 Polarization: 4.07 SS G_CDS: -2.17 Total: 1.89 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.64 -7.40 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459533028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.566 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.042 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds