Wall clock time and date at job start Tue Mar 31 2020 16:40:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50700 * 109.47317 * 2 1 4 4 N 1.31982 * 122.71727 * 269.96111 * 3 2 1 5 5 C 1.29624 * 116.91989 * 180.02562 * 4 3 2 6 6 N 1.39001 * 124.94417 * 180.02562 * 5 4 3 7 7 C 1.34780 * 119.99828 * 179.97438 * 6 5 4 8 8 O 1.21284 * 120.00007 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99886 * 179.97438 * 7 6 5 10 10 N 1.46496 * 109.46927 * 180.02562 * 9 7 6 11 11 C 1.36943 * 119.99794 * 269.99602 * 10 9 7 12 12 H 1.08001 * 119.99780 * 142.13751 * 11 10 9 13 13 C 1.38810 * 120.00067 * 322.14203 * 11 10 9 14 14 N 1.31621 * 119.99886 * 159.55613 * 13 11 10 15 15 Si 1.86800 * 119.99910 * 339.55099 * 13 11 10 16 16 H 1.48501 * 109.46910 * 95.28963 * 15 13 11 17 17 H 1.48492 * 109.47364 * 215.28937 * 15 13 11 18 18 H 1.48495 * 109.47287 * 335.29203 * 15 13 11 19 19 C 1.46498 * 120.00641 * 89.99901 * 10 9 7 20 20 C 1.53002 * 109.47302 * 84.82815 * 19 10 9 21 21 O 1.42904 * 109.46416 * 63.50431 * 20 19 10 22 22 C 1.42905 * 113.99794 * 179.97438 * 21 20 19 23 23 S 1.70969 * 110.10994 * 359.72369 * 5 4 3 24 24 C 1.33452 * 122.71413 * 90.00332 * 3 2 1 25 25 C 1.50700 * 125.96648 * 359.95742 * 24 3 2 26 26 H 1.09003 * 109.46993 * 300.00487 * 1 2 3 27 27 H 1.09001 * 109.46757 * 59.99685 * 1 2 3 28 28 H 1.08991 * 109.47494 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47127 * 240.00041 * 2 1 3 30 30 H 1.09001 * 109.46757 * 120.00315 * 2 1 3 31 31 H 0.97000 * 120.00552 * 359.97438 * 6 5 4 32 32 H 1.09001 * 109.47044 * 299.99990 * 9 7 6 33 33 H 1.08995 * 109.46985 * 60.00068 * 9 7 6 34 34 H 0.96999 * 119.99454 * 179.97438 * 14 13 11 35 35 H 1.08995 * 109.47940 * 204.83766 * 19 10 9 36 36 H 1.09002 * 109.47006 * 324.83655 * 19 10 9 37 37 H 1.08997 * 109.47178 * 183.49999 * 20 19 10 38 38 H 1.08997 * 109.47458 * 303.50851 * 20 19 10 39 39 H 1.09000 * 109.46860 * 60.00258 * 22 21 20 40 40 H 1.09002 * 109.47113 * 180.02562 * 22 21 20 41 41 H 1.08997 * 109.47079 * 300.00142 * 22 21 20 42 42 H 1.09003 * 109.46855 * 90.00810 * 25 24 3 43 43 H 1.08998 * 109.47493 * 330.00831 * 25 24 3 44 44 H 1.08996 * 109.46832 * 209.99974 * 25 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2709 2.0931 -1.1104 5 6 2.7012 3.3088 -0.9795 6 7 3.0039 4.1640 -2.0326 7 6 3.4453 5.4124 -1.7814 8 8 3.5787 5.7895 -0.6364 9 6 3.7740 6.3394 -2.9232 10 7 4.2294 7.6264 -2.3917 11 6 3.3243 8.6237 -2.1439 12 1 3.4444 9.2593 -1.2790 13 6 2.2524 8.8177 -3.0042 14 7 1.1861 9.4691 -2.5906 15 14 2.3233 8.1543 -4.7490 16 1 1.6597 6.8268 -4.8012 17 1 1.6255 9.0928 -5.6642 18 1 3.7409 8.0159 -5.1688 19 6 5.6530 7.8466 -2.1253 20 6 6.3495 8.2937 -3.4122 21 8 5.8138 9.5504 -3.8316 22 6 6.3996 10.0607 -5.0310 23 16 2.8343 3.7100 0.6771 24 6 2.2729 2.1008 1.1228 25 6 2.0894 1.5845 2.5267 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 2.8975 3.8624 -2.9484 32 1 4.5627 5.8991 -3.5332 33 1 2.8847 6.4926 -3.5344 34 1 0.4372 9.6049 -3.1920 35 1 5.7652 8.6187 -1.3642 36 1 6.1041 6.9195 -1.7715 37 1 7.4190 8.3976 -3.2292 38 1 6.1847 7.5501 -4.1918 39 1 6.2362 9.3538 -5.8444 40 1 5.9396 11.0166 -5.2819 41 1 7.4701 10.2013 -4.8813 42 1 3.0140 1.1169 2.8656 43 1 1.2842 0.8500 2.5415 44 1 1.8377 2.4131 3.1885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459533028.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:40:55 Heat of formation + Delta-G solvation = -29.087147 kcal Electronic energy + Delta-G solvation = -26027.080896 eV Core-core repulsion = 22299.888808 eV Total energy + Delta-G solvation = -3727.192087 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.51203 -40.59932 -38.86010 -37.18759 -36.28573 -34.17041 -33.81634 -32.31345 -31.18942 -29.18955 -27.34305 -27.17918 -25.31154 -25.05026 -24.07508 -22.61467 -21.86640 -20.49352 -19.15316 -18.88568 -17.97419 -17.74081 -17.34386 -17.24460 -16.67093 -16.55026 -15.96804 -15.71252 -15.36402 -15.17419 -15.07374 -14.85158 -14.59056 -14.43817 -14.02807 -13.84885 -13.57562 -13.42942 -13.24164 -13.13448 -12.82738 -12.78893 -12.55175 -12.37008 -12.12114 -11.98601 -11.88279 -11.81923 -11.58595 -11.51912 -10.92114 -10.74164 -10.62491 -10.36186 -10.10682 -9.05379 -8.88927 -8.14657 -5.56898 -0.24025 0.18271 0.95647 1.24413 1.29898 1.45182 1.55589 1.60907 1.98105 2.43698 2.98493 3.22535 3.28124 3.49630 3.82408 4.09261 4.17590 4.21325 4.27929 4.38338 4.42683 4.44944 4.48068 4.53392 4.59785 4.64603 4.70598 4.76270 4.77489 4.89475 4.90619 4.92298 5.04400 5.08660 5.16897 5.20186 5.31760 5.49665 5.85807 6.01490 6.20348 6.55133 6.80890 6.83314 6.98868 7.57757 7.93546 9.05643 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.003327 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.800733 B = 8413.248663 C = 8816.840627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.066 3.934 4 N -0.525 5.525 5 C 0.231 3.769 6 N -0.624 5.624 7 C 0.483 3.517 8 O -0.515 6.515 9 C 0.122 3.878 10 N -0.579 5.579 11 C -0.230 4.230 12 H 0.029 0.971 13 C -0.024 4.024 14 N -0.956 5.956 15 Si 0.939 3.061 16 H -0.269 1.269 17 H -0.314 1.314 18 H -0.234 1.234 19 C 0.147 3.853 20 C 0.044 3.956 21 O -0.401 6.401 22 C 0.025 3.975 23 S 0.192 5.808 24 C -0.281 4.281 25 C -0.066 4.066 26 H 0.055 0.945 27 H 0.036 0.964 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.430 0.570 32 H 0.129 0.871 33 H 0.076 0.924 34 H 0.260 0.740 35 H 0.047 0.953 36 H 0.083 0.917 37 H 0.070 0.930 38 H 0.049 0.951 39 H 0.039 0.961 40 H 0.078 0.922 41 H 0.057 0.943 42 H 0.087 0.913 43 H 0.095 0.905 44 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.250 -18.642 0.982 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.082 4.082 3 C -0.065 4.065 4 N -0.249 5.249 5 C -0.136 4.136 6 N -0.277 5.277 7 C 0.268 3.732 8 O -0.388 6.388 9 C -0.008 4.008 10 N -0.298 5.298 11 C -0.360 4.360 12 H 0.047 0.953 13 C -0.219 4.219 14 N -0.600 5.600 15 Si 0.766 3.234 16 H -0.197 1.197 17 H -0.243 1.243 18 H -0.157 1.157 19 C 0.022 3.978 20 C -0.034 4.034 21 O -0.320 6.320 22 C -0.071 4.071 23 S 0.443 5.557 24 C -0.403 4.403 25 C -0.125 4.125 26 H 0.075 0.925 27 H 0.055 0.945 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.121 0.879 31 H 0.270 0.730 32 H 0.147 0.853 33 H 0.093 0.907 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.101 0.899 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.075 0.925 42 H 0.106 0.894 43 H 0.113 0.887 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 7.396 -17.325 1.801 18.924 hybrid contribution -0.750 -0.475 -1.549 1.786 sum 6.646 -17.800 0.251 19.002 Atomic orbital electron populations 1.21691 0.93932 1.02887 1.01394 1.20196 0.96409 0.87389 1.04178 1.20248 1.01594 0.99205 0.85458 1.66228 1.20393 1.04607 1.33660 1.23596 1.02641 0.92261 0.95079 1.43419 1.63963 1.11767 1.08588 1.23803 0.75026 0.80308 0.94027 1.90567 1.50897 1.73465 1.23821 1.21555 1.01770 0.85348 0.92137 1.43732 1.03277 1.07262 1.75558 1.18378 1.03845 1.09373 1.04428 0.95332 1.26084 0.95649 0.98561 1.01625 1.70020 1.05856 1.47394 1.36770 0.85945 0.79666 0.76627 0.81114 1.19664 1.24310 1.15697 1.21189 0.82134 0.99576 0.94888 1.23279 0.96992 0.85462 0.97667 1.88138 1.63958 1.37273 1.42645 1.22827 0.98231 0.99146 0.86912 1.85226 1.62115 1.10906 0.97468 1.26509 1.12709 0.98735 1.02368 1.20265 1.03783 1.01375 0.87108 0.92541 0.94502 0.89731 0.90476 0.87875 0.72961 0.85296 0.90698 0.93101 0.93403 0.89878 0.91252 0.93298 0.94241 0.90374 0.92458 0.89415 0.88667 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.89 71.98 0.71 -1.72 16 2 C -0.04 -0.79 5.86 29.85 0.17 -0.61 16 3 C 0.07 1.80 5.99 41.45 0.25 2.05 16 4 N -0.53 -16.91 10.58 -189.59 -2.01 -18.92 16 5 C 0.23 7.98 8.19 179.21 1.47 9.45 16 6 N -0.62 -20.54 5.40 -313.64 -1.69 -22.23 16 7 C 0.48 18.67 7.86 87.66 0.69 19.36 16 8 O -0.51 -23.42 13.90 -3.04 -0.04 -23.46 16 9 C 0.12 4.62 4.99 85.63 0.43 5.04 16 10 N -0.58 -26.04 1.51 -706.35 -1.07 -27.11 16 11 C -0.23 -13.13 9.63 84.03 0.81 -12.32 16 12 H 0.03 1.91 8.06 -2.91 -0.02 1.88 16 13 C -0.02 -1.40 5.33 84.86 0.45 -0.95 16 14 N -0.96 -61.08 13.97 21.65 0.30 -60.78 16 15 Si 0.94 43.82 24.92 68.60 1.71 45.53 16 16 H -0.27 -11.48 6.69 99.48 0.67 -10.81 16 17 H -0.31 -15.39 7.11 99.48 0.71 -14.68 16 18 H -0.23 -9.81 7.11 99.48 0.71 -9.11 16 19 C 0.15 5.43 6.08 86.38 0.53 5.96 16 20 C 0.04 1.40 6.29 71.98 0.45 1.85 16 21 O -0.40 -15.47 10.36 -148.98 -1.54 -17.02 16 22 C 0.03 0.72 11.01 113.37 1.25 1.97 16 23 S 0.19 6.48 20.22 -56.49 -1.14 5.34 16 24 C -0.28 -7.42 6.58 24.60 0.16 -7.26 16 25 C -0.07 -1.16 9.80 71.24 0.70 -0.46 16 26 H 0.06 0.95 7.98 -2.39 -0.02 0.93 16 27 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 1.39 7.34 -2.39 -0.02 1.37 16 31 H 0.43 11.33 8.82 -92.71 -0.82 10.52 16 32 H 0.13 3.55 8.07 -2.39 -0.02 3.53 16 33 H 0.08 3.07 3.15 -2.39 -0.01 3.06 16 34 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 35 H 0.05 1.96 8.00 -2.39 -0.02 1.94 16 36 H 0.08 2.59 8.11 -2.39 -0.02 2.57 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.70 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.08 2.18 8.14 -2.39 -0.02 2.16 16 41 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.09 1.26 7.25 -2.39 -0.02 1.24 16 44 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 Total: -1.00 -78.45 375.78 2.74 -75.72 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.15 Total: 20.57 kcal Atomic # 6 Polarization: 14.29 SS G_CDS: 8.07 Total: 22.36 kcal Atomic # 7 Polarization: -124.57 SS G_CDS: -4.47 Total: -129.04 kcal Atomic # 8 Polarization: -38.89 SS G_CDS: -1.59 Total: -40.48 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.71 Total: 45.53 kcal Atomic # 16 Polarization: 6.48 SS G_CDS: -1.14 Total: 5.34 kcal Total: -78.45 2.74 -75.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459533028.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.630 kcal (2) G-P(sol) polarization free energy of solvation -78.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds