Wall clock time and date at job start Tue Mar 31 2020 15:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34127 * 125.98697 * 2 1 4 4 C 1.30500 * 109.25643 * 180.02562 * 3 2 1 5 5 N 1.35050 * 108.69744 * 359.77414 * 4 3 2 6 6 H 0.96996 * 126.39451 * 180.26767 * 5 4 3 7 7 C 1.34663 * 125.99234 * 180.02562 * 2 1 3 8 8 C 1.50699 * 126.59010 * 359.95937 * 7 2 1 9 9 N 1.46495 * 109.47309 * 79.99824 * 8 7 2 10 10 C 1.34784 * 120.00463 * 179.97438 * 9 8 7 11 11 O 1.21721 * 119.99310 * 0.02562 * 10 9 8 12 12 C 1.46251 * 120.00564 * 180.02562 * 10 9 8 13 13 C 1.35024 * 120.00158 * 173.07168 * 12 10 9 14 14 C 1.46959 * 119.99972 * 348.87015 * 13 12 10 15 15 C 1.40028 * 120.09993 * 311.82228 * 14 13 12 16 16 C 1.37601 * 119.89483 * 179.69965 * 15 14 13 17 17 C 1.39179 * 120.09980 * 0.59358 * 16 15 14 18 18 O 1.35565 * 119.89401 * 179.69892 * 17 16 15 19 19 C 1.34783 * 116.99961 * 185.61711 * 18 17 16 20 20 H 1.08002 * 119.99929 * 354.91077 * 19 18 17 21 21 C 1.38720 * 120.00304 * 174.90935 * 19 18 17 22 22 N 1.31505 * 120.00192 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99813 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46942 * 90.00149 * 23 21 19 25 25 H 1.48502 * 109.46680 * 210.00161 * 23 21 19 26 26 H 1.48500 * 109.47106 * 329.99852 * 23 21 19 27 27 C 1.39170 * 120.20438 * 359.67825 * 17 16 15 28 28 C 1.37604 * 120.10275 * 0.02562 * 27 17 16 29 29 H 1.09011 * 109.46938 * 269.99693 * 1 2 3 30 30 H 1.09004 * 109.47722 * 29.99302 * 1 2 3 31 31 H 1.08997 * 109.47603 * 149.99879 * 1 2 3 32 32 H 1.07992 * 125.65141 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.47242 * 320.00324 * 8 7 2 34 34 H 1.08997 * 109.47354 * 200.00313 * 8 7 2 35 35 H 0.97004 * 120.00082 * 0.02562 * 9 8 7 36 36 H 1.07997 * 119.99348 * 353.06911 * 12 10 9 37 37 H 1.07994 * 119.99517 * 168.59180 * 13 12 10 38 38 H 1.08000 * 120.04897 * 359.97438 * 15 14 13 39 39 H 1.07998 * 119.94517 * 180.26976 * 16 15 14 40 40 H 0.96995 * 120.00248 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.94881 * 180.02562 * 27 17 16 42 42 H 1.08001 * 120.05290 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7096 -0.0006 5 7 3.5912 -0.6401 0.0041 6 1 4.3913 -1.1884 0.0085 7 6 2.2984 -1.0896 -0.0005 8 6 1.8473 -2.5274 -0.0003 9 7 1.4714 -2.9216 -1.3602 10 6 1.0343 -4.1733 -1.6027 11 8 0.9514 -4.9761 -0.6915 12 6 0.6596 -4.5669 -2.9605 13 6 0.3562 -5.8546 -3.2307 14 6 0.6344 -6.8995 -2.2354 15 6 1.8868 -6.9600 -1.6120 16 6 2.1406 -7.9363 -0.6762 17 6 1.1590 -8.8702 -0.3580 18 8 1.4157 -9.8341 0.5601 19 6 0.4687 -10.7763 0.7392 20 1 -0.4774 -10.6957 0.2246 21 6 0.7093 -11.8498 1.5843 22 7 -0.2144 -12.7694 1.7585 23 14 2.3461 -11.9897 2.4736 24 1 2.2579 -11.2974 3.7844 25 1 2.6701 -13.4225 2.6913 26 1 3.4112 -11.3606 1.6521 27 6 -0.0853 -8.8175 -0.9792 28 6 -0.3502 -7.8410 -1.9118 29 1 -0.3633 -0.0001 1.0278 30 1 -0.3635 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 4.4003 1.3688 -0.0003 33 1 0.9877 -2.6385 0.6608 34 1 2.6601 -3.1632 0.3508 35 1 1.5379 -2.2819 -2.0864 36 1 0.6256 -3.8276 -3.7470 37 1 -0.0950 -6.1160 -4.1764 38 1 2.6508 -6.2387 -1.8621 39 1 3.1048 -7.9810 -0.1917 40 1 -0.0463 -13.5198 2.3497 41 1 -0.8441 -9.5440 -0.7288 42 1 -1.3162 -7.8005 -2.3930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492086059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:02 Heat of formation + Delta-G solvation = 47.303072 kcal Electronic energy + Delta-G solvation = -26135.291819 eV Core-core repulsion = 22275.968309 eV Total energy + Delta-G solvation = -3859.323510 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.50120 -39.78454 -38.87989 -36.75408 -34.99914 -33.48809 -33.13402 -32.31331 -31.53998 -30.23658 -28.76446 -27.77950 -25.77219 -25.16937 -22.89260 -22.02505 -21.94026 -20.95187 -20.10666 -19.42817 -18.16827 -17.80692 -17.33595 -16.87887 -16.09119 -15.52945 -15.22486 -14.87351 -14.71151 -14.57067 -13.97473 -13.86475 -13.70513 -13.44162 -13.30177 -13.08907 -13.05160 -12.96943 -12.72957 -12.58681 -12.37988 -12.27226 -12.12484 -11.44392 -10.98386 -10.77541 -10.71775 -10.35840 -10.27027 -10.16050 -9.67074 -9.46120 -9.27786 -9.11403 -8.79694 -8.65274 -8.08676 -7.02665 -6.42874 -4.07039 1.17342 1.50269 2.29889 2.53594 2.66162 2.71927 3.22628 3.25342 3.39823 3.41114 3.51735 4.16722 4.23148 4.42243 4.58732 4.70958 4.88756 4.93535 4.97622 5.08071 5.09981 5.14439 5.42211 5.47551 5.53913 5.63401 5.64918 5.70968 5.72435 5.85573 6.14970 6.22842 6.28764 6.35210 6.38428 6.46013 6.63034 6.89390 6.96213 7.14703 7.27585 7.35968 7.53179 7.65296 7.67478 7.83162 8.05106 8.40681 8.92265 9.56591 10.64508 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.002459 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.738437 B =11384.555552 C =12301.705164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.026 3.974 3 N -0.494 5.494 4 C 0.193 3.807 5 N -0.562 5.562 6 H 0.421 0.579 7 C -0.045 4.045 8 C 0.201 3.799 9 N -0.734 5.734 10 C 0.540 3.460 11 O -0.510 6.510 12 C -0.258 4.258 13 C 0.025 3.975 14 C -0.173 4.173 15 C -0.003 4.003 16 C -0.198 4.198 17 C 0.174 3.826 18 O -0.214 6.214 19 C -0.388 4.388 20 H 0.108 0.892 21 C 0.063 3.937 22 N -0.877 5.877 23 Si 0.905 3.095 24 H -0.273 1.273 25 H -0.282 1.282 26 H -0.259 1.259 27 C -0.233 4.233 28 C -0.045 4.045 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.210 0.790 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.397 0.603 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.102 0.898 39 H 0.113 0.887 40 H 0.280 0.720 41 H 0.132 0.868 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.212 23.809 -8.467 26.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.104 4.104 3 N -0.214 5.214 4 C -0.091 4.091 5 N -0.165 5.165 6 H 0.260 0.740 7 C -0.161 4.161 8 C 0.076 3.924 9 N -0.388 5.388 10 C 0.330 3.670 11 O -0.386 6.386 12 C -0.279 4.279 13 C 0.005 3.995 14 C -0.174 4.174 15 C -0.022 4.022 16 C -0.218 4.218 17 C 0.121 3.879 18 O -0.118 6.118 19 C -0.463 4.463 20 H 0.125 0.875 21 C -0.140 4.140 22 N -0.515 5.515 23 Si 0.731 3.269 24 H -0.198 1.198 25 H -0.208 1.208 26 H -0.183 1.183 27 C -0.252 4.252 28 C -0.064 4.064 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.226 0.774 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.231 0.769 36 H 0.140 0.860 37 H 0.142 0.858 38 H 0.120 0.880 39 H 0.131 0.869 40 H 0.090 0.910 41 H 0.150 0.850 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 5.965 23.764 -7.497 25.622 hybrid contribution 1.364 -0.708 0.111 1.541 sum 7.329 23.056 -7.386 25.295 Atomic orbital electron populations 1.20117 0.87401 1.02935 1.02645 1.20637 0.96637 0.87736 1.05438 1.70241 1.00571 1.30647 1.19930 1.25009 0.97422 0.81938 1.04711 1.43272 1.08202 1.08747 1.56298 0.74049 1.20994 0.84093 0.96706 1.14258 1.19384 1.00779 0.86845 0.85389 1.46073 1.69197 1.13903 1.09639 1.18510 0.77216 0.81125 0.90170 1.91014 1.51654 1.49758 1.46131 1.22640 1.12472 0.97340 0.95496 1.22370 0.88572 0.91838 0.96712 1.18346 0.95988 0.99152 1.03893 1.20405 0.94892 0.94056 0.92828 1.19987 0.99002 0.98940 1.03827 1.19261 0.92711 0.88548 0.87343 1.83501 1.44600 1.33814 1.49872 1.20826 0.96011 1.00619 1.28860 0.87465 1.24489 0.98970 0.93939 0.96621 1.69621 1.33785 1.11423 1.36636 0.86180 0.83229 0.77263 0.80245 1.19846 1.20783 1.18331 1.21084 0.98263 1.03019 1.02834 1.20780 0.97086 0.92549 0.95970 0.91097 0.91004 0.90970 0.77375 0.89176 0.90953 0.76879 0.85995 0.85787 0.88033 0.86897 0.91000 0.84996 0.87284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.22 36.00 0.37 -0.25 16 2 C 0.03 0.26 7.09 -82.86 -0.59 -0.33 16 3 N -0.49 -5.18 11.25 -10.88 -0.12 -5.30 16 4 C 0.19 1.37 13.04 -90.37 -1.18 0.19 16 5 N -0.56 -3.65 6.15 -10.30 -0.06 -3.72 16 6 H 0.42 1.60 8.96 -40.82 -0.37 1.24 16 7 C -0.05 -0.40 6.61 -81.61 -0.54 -0.93 16 8 C 0.20 1.94 5.75 -5.20 -0.03 1.91 16 9 N -0.73 -7.11 5.54 -62.94 -0.35 -7.46 16 10 C 0.54 7.11 6.94 -13.04 -0.09 7.02 16 11 O -0.51 -9.07 12.49 5.17 0.06 -9.01 16 12 C -0.26 -2.92 9.92 -37.51 -0.37 -3.30 16 13 C 0.02 0.32 9.77 -37.19 -0.36 -0.05 16 14 C -0.17 -2.99 4.34 -105.03 -0.46 -3.45 16 15 C 0.00 -0.06 6.77 -39.14 -0.27 -0.33 16 16 C -0.20 -4.18 9.97 -39.46 -0.39 -4.58 16 17 C 0.17 4.19 6.66 -38.89 -0.26 3.93 16 18 O -0.21 -5.78 8.57 0.75 0.01 -5.77 16 19 C -0.39 -11.07 9.94 30.91 0.31 -10.76 16 20 H 0.11 3.12 5.41 -52.49 -0.28 2.84 16 21 C 0.06 1.79 5.49 -17.51 -0.10 1.70 16 22 N -0.88 -25.44 13.96 55.48 0.77 -24.67 16 23 Si 0.91 21.86 28.62 -169.99 -4.86 17.00 16 24 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 H -0.26 -6.28 7.11 56.52 0.40 -5.88 16 27 C -0.23 -5.20 9.14 -39.47 -0.36 -5.57 16 28 C -0.05 -0.85 9.78 -39.15 -0.38 -1.24 16 29 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.57 7.89 -51.93 -0.41 0.16 16 32 H 0.21 0.63 8.06 -52.49 -0.42 0.21 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.40 3.03 8.44 -40.82 -0.34 2.69 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.10 1.65 7.46 -52.49 -0.39 1.26 16 39 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 40 H 0.28 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.13 3.07 5.62 -52.49 -0.29 2.77 16 42 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 LS Contribution 364.32 15.07 5.49 5.49 Total: -1.00 -34.82 364.32 -8.79 -43.61 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -5.03 Total: 5.85 kcal Atomic # 6 Polarization: -11.32 SS G_CDS: -4.70 Total: -16.02 kcal Atomic # 7 Polarization: -41.39 SS G_CDS: 0.24 Total: -41.15 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.07 Total: -14.78 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -4.86 Total: 17.00 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.82 -8.79 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492086059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.918 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.615 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds