Wall clock time and date at job start Tue Mar 31 2020 15:31:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.34127 * 125.98697 * 2 1 4 4 C 1.30500 * 109.25643 * 180.02562 * 3 2 1 5 5 N 1.35050 * 108.69744 * 359.77414 * 4 3 2 6 6 H 0.96996 * 126.39451 * 180.26767 * 5 4 3 7 7 C 1.34663 * 125.99234 * 180.02562 * 2 1 3 8 8 C 1.50699 * 126.59010 * 359.95937 * 7 2 1 9 9 N 1.46495 * 109.47309 * 79.99824 * 8 7 2 10 10 C 1.34784 * 120.00463 * 179.97438 * 9 8 7 11 11 O 1.21721 * 119.99310 * 0.02562 * 10 9 8 12 12 C 1.46251 * 120.00564 * 180.02562 * 10 9 8 13 13 C 1.35024 * 120.00158 * 173.07168 * 12 10 9 14 14 C 1.46959 * 119.99972 * 348.87015 * 13 12 10 15 15 C 1.40028 * 120.09993 * 311.82228 * 14 13 12 16 16 C 1.37601 * 119.89483 * 179.69965 * 15 14 13 17 17 C 1.39179 * 120.09980 * 0.59358 * 16 15 14 18 18 O 1.35565 * 119.89401 * 179.69892 * 17 16 15 19 19 C 1.34783 * 116.99961 * 185.61711 * 18 17 16 20 20 H 1.08002 * 119.99929 * 354.91077 * 19 18 17 21 21 C 1.38720 * 120.00304 * 174.90935 * 19 18 17 22 22 N 1.31505 * 120.00192 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99813 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46942 * 90.00149 * 23 21 19 25 25 H 1.48502 * 109.46680 * 210.00161 * 23 21 19 26 26 H 1.48500 * 109.47106 * 329.99852 * 23 21 19 27 27 C 1.39170 * 120.20438 * 359.67825 * 17 16 15 28 28 C 1.37604 * 120.10275 * 0.02562 * 27 17 16 29 29 H 1.09011 * 109.46938 * 269.99693 * 1 2 3 30 30 H 1.09004 * 109.47722 * 29.99302 * 1 2 3 31 31 H 1.08997 * 109.47603 * 149.99879 * 1 2 3 32 32 H 1.07992 * 125.65141 * 180.02562 * 4 3 2 33 33 H 1.09007 * 109.47242 * 320.00324 * 8 7 2 34 34 H 1.08997 * 109.47354 * 200.00313 * 8 7 2 35 35 H 0.97004 * 120.00082 * 0.02562 * 9 8 7 36 36 H 1.07997 * 119.99348 * 353.06911 * 12 10 9 37 37 H 1.07994 * 119.99517 * 168.59180 * 13 12 10 38 38 H 1.08000 * 120.04897 * 359.97438 * 15 14 13 39 39 H 1.07998 * 119.94517 * 180.26976 * 16 15 14 40 40 H 0.96995 * 120.00248 * 180.02562 * 22 21 19 41 41 H 1.07998 * 119.94881 * 180.02562 * 27 17 16 42 42 H 1.08001 * 120.05290 * 180.02562 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7096 -0.0006 5 7 3.5912 -0.6401 0.0041 6 1 4.3913 -1.1884 0.0085 7 6 2.2984 -1.0896 -0.0005 8 6 1.8473 -2.5274 -0.0003 9 7 1.4714 -2.9216 -1.3602 10 6 1.0343 -4.1733 -1.6027 11 8 0.9514 -4.9761 -0.6915 12 6 0.6596 -4.5669 -2.9605 13 6 0.3562 -5.8546 -3.2307 14 6 0.6344 -6.8995 -2.2354 15 6 1.8868 -6.9600 -1.6120 16 6 2.1406 -7.9363 -0.6762 17 6 1.1590 -8.8702 -0.3580 18 8 1.4157 -9.8341 0.5601 19 6 0.4687 -10.7763 0.7392 20 1 -0.4774 -10.6957 0.2246 21 6 0.7093 -11.8498 1.5843 22 7 -0.2144 -12.7694 1.7585 23 14 2.3461 -11.9897 2.4736 24 1 2.2579 -11.2974 3.7844 25 1 2.6701 -13.4225 2.6913 26 1 3.4112 -11.3606 1.6521 27 6 -0.0853 -8.8175 -0.9792 28 6 -0.3502 -7.8410 -1.9118 29 1 -0.3633 -0.0001 1.0278 30 1 -0.3635 0.8900 -0.5137 31 1 -0.3634 -0.8899 -0.5138 32 1 4.4003 1.3688 -0.0003 33 1 0.9877 -2.6385 0.6608 34 1 2.6601 -3.1632 0.3508 35 1 1.5379 -2.2819 -2.0864 36 1 0.6256 -3.8276 -3.7470 37 1 -0.0950 -6.1160 -4.1764 38 1 2.6508 -6.2387 -1.8621 39 1 3.1048 -7.9810 -0.1917 40 1 -0.0463 -13.5198 2.3497 41 1 -0.8441 -9.5440 -0.7288 42 1 -1.3162 -7.8005 -2.3930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492086059.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:01 Heat of formation + Delta-G solvation = 23.639640 kcal Electronic energy + Delta-G solvation = -26136.317943 eV Core-core repulsion = 22275.968309 eV Total energy + Delta-G solvation = -3860.349634 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -43.12086 -41.09112 -40.41911 -38.33006 -36.00524 -34.64168 -34.10353 -34.08476 -32.32814 -31.84877 -30.00890 -28.76715 -27.33169 -26.29883 -24.10121 -23.57762 -22.66031 -22.30167 -20.88890 -20.43624 -19.73536 -19.17994 -18.69850 -18.03598 -17.03720 -16.61133 -16.37296 -16.10710 -15.96818 -15.75022 -15.56067 -15.40951 -15.11698 -14.67526 -14.33070 -14.28169 -14.14302 -14.01357 -13.78503 -13.74204 -13.68637 -13.62709 -13.07499 -13.02360 -12.65312 -12.50458 -12.29171 -11.95659 -11.32050 -11.06653 -11.01504 -10.91140 -10.72669 -10.44937 -10.07048 -9.64079 -9.33397 -8.63307 -8.51396 -6.22473 0.01784 0.68115 0.86520 1.05114 1.28781 1.35017 1.49550 2.03419 2.14155 2.26655 2.46886 2.59142 2.79104 3.10347 3.18484 3.59540 3.80799 3.98780 4.02236 4.07273 4.13677 4.16727 4.36111 4.43943 4.53709 4.58710 4.65002 4.78488 4.81973 4.94613 4.99338 5.07288 5.18614 5.19097 5.22700 5.40527 5.43245 5.46124 5.68028 5.71881 5.77894 5.81866 5.91089 6.27030 6.49742 6.66932 6.82665 7.06814 7.41462 7.58770 8.60132 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016866 B = 0.002459 C = 0.002276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.738437 B =11384.555552 C =12301.705164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.009 3.991 3 N -0.536 5.536 4 C 0.207 3.793 5 N -0.552 5.552 6 H 0.435 0.565 7 C -0.050 4.050 8 C 0.206 3.794 9 N -0.712 5.712 10 C 0.531 3.469 11 O -0.563 6.563 12 C -0.222 4.222 13 C 0.000 4.000 14 C -0.141 4.141 15 C -0.002 4.002 16 C -0.203 4.203 17 C 0.129 3.871 18 O -0.245 6.245 19 C -0.400 4.400 20 H 0.081 0.919 21 C 0.010 3.990 22 N -0.921 5.921 23 Si 0.971 3.029 24 H -0.267 1.267 25 H -0.264 1.264 26 H -0.264 1.264 27 C -0.248 4.248 28 C -0.057 4.057 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.248 0.752 33 H 0.076 0.924 34 H 0.068 0.932 35 H 0.412 0.588 36 H 0.172 0.828 37 H 0.167 0.833 38 H 0.129 0.871 39 H 0.118 0.882 40 H 0.285 0.715 41 H 0.108 0.892 42 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.975 27.549 -10.883 30.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.122 4.122 3 N -0.256 5.256 4 C -0.078 4.078 5 N -0.157 5.157 6 H 0.276 0.724 7 C -0.165 4.165 8 C 0.081 3.919 9 N -0.365 5.365 10 C 0.321 3.679 11 O -0.443 6.443 12 C -0.242 4.242 13 C -0.019 4.019 14 C -0.141 4.141 15 C -0.020 4.020 16 C -0.222 4.222 17 C 0.080 3.920 18 O -0.152 6.152 19 C -0.476 4.476 20 H 0.099 0.901 21 C -0.188 4.188 22 N -0.562 5.562 23 Si 0.793 3.207 24 H -0.192 1.192 25 H -0.188 1.188 26 H -0.188 1.188 27 C -0.268 4.268 28 C -0.075 4.075 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.264 0.736 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.249 0.751 36 H 0.190 0.810 37 H 0.184 0.816 38 H 0.147 0.853 39 H 0.136 0.864 40 H 0.095 0.905 41 H 0.126 0.874 42 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.747 27.577 -9.967 30.329 hybrid contribution 0.807 -1.323 0.602 1.662 sum 8.554 26.254 -9.365 29.158 Atomic orbital electron populations 1.20112 0.87134 1.03105 1.02593 1.20876 0.97247 0.88145 1.05889 1.70241 1.02090 1.31404 1.21895 1.25768 0.97571 0.82358 1.02060 1.43245 1.08002 1.08883 1.55531 0.72417 1.20723 0.84986 0.95710 1.15116 1.19237 1.00119 0.87478 0.85020 1.45904 1.67265 1.13146 1.10217 1.19016 0.76777 0.81495 0.90592 1.91022 1.54060 1.51406 1.47810 1.23067 1.08077 0.97825 0.95251 1.22567 0.90995 0.91032 0.97337 1.18908 0.94518 0.98473 1.02243 1.20744 0.96167 0.93348 0.91780 1.20252 0.98659 0.98788 1.04509 1.19752 0.94373 0.89276 0.88604 1.83443 1.44334 1.34931 1.52510 1.20749 0.95837 1.01805 1.29238 0.90107 1.25290 1.02544 0.93531 0.97463 1.69701 1.35715 1.12445 1.38346 0.85224 0.78663 0.78012 0.78833 1.19224 1.18846 1.18836 1.21121 0.97437 1.03990 1.04220 1.21132 0.99062 0.92055 0.95204 0.91316 0.90915 0.90625 0.73629 0.90572 0.91366 0.75119 0.81045 0.81580 0.85304 0.86360 0.90504 0.87445 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.13 10.22 71.24 0.73 -0.40 16 2 C 0.01 0.16 7.09 41.39 0.29 0.45 16 3 N -0.54 -10.11 11.25 -188.32 -2.12 -12.22 16 4 C 0.21 2.29 13.04 180.26 2.35 4.64 16 5 N -0.55 -5.53 6.15 -186.50 -1.15 -6.68 16 6 H 0.44 1.89 8.96 -92.71 -0.83 1.06 16 7 C -0.05 -0.75 6.61 40.95 0.27 -0.48 16 8 C 0.21 3.58 5.75 85.63 0.49 4.08 16 9 N -0.71 -11.26 5.54 -471.24 -2.61 -13.88 16 10 C 0.53 11.97 6.94 86.32 0.60 12.57 16 11 O -0.56 -18.92 12.49 -4.42 -0.06 -18.97 16 12 C -0.22 -3.70 9.92 23.61 0.23 -3.47 16 13 C 0.00 0.00 9.77 23.82 0.23 0.23 16 14 C -0.14 -4.50 4.34 -20.13 -0.09 -4.59 16 15 C 0.00 -0.08 6.77 22.55 0.15 0.07 16 16 C -0.20 -8.67 9.97 22.35 0.22 -8.45 16 17 C 0.13 6.53 6.66 22.72 0.15 6.69 16 18 O -0.24 -14.10 8.57 -20.22 -0.17 -14.27 16 19 C -0.40 -24.56 9.94 67.94 0.68 -23.89 16 20 H 0.08 5.19 5.41 -2.91 -0.02 5.17 16 21 C 0.01 0.61 5.49 84.86 0.47 1.07 16 22 N -0.92 -56.29 13.96 21.62 0.30 -55.99 16 23 Si 0.97 46.91 28.62 68.60 1.96 48.87 16 24 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 25 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 26 H -0.26 -12.78 7.11 99.48 0.71 -12.07 16 27 C -0.25 -11.71 9.14 22.34 0.20 -11.50 16 28 C -0.06 -2.08 9.78 22.55 0.22 -1.86 16 29 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 30 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.07 1.08 7.89 -2.39 -0.02 1.06 16 32 H 0.25 0.47 8.06 -2.91 -0.02 0.44 16 33 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 34 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.41 4.38 8.44 -92.71 -0.78 3.60 16 36 H 0.17 1.31 8.06 -2.91 -0.02 1.28 16 37 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.13 3.76 7.46 -2.91 -0.02 3.74 16 39 H 0.12 4.78 8.06 -2.91 -0.02 4.75 16 40 H 0.29 15.92 8.31 -92.71 -0.77 15.15 16 41 H 0.11 5.50 5.62 -2.91 -0.02 5.48 16 42 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -82.72 364.32 2.84 -79.89 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -0.53 Total: 18.07 kcal Atomic # 6 Polarization: -32.03 SS G_CDS: 7.21 Total: -24.83 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -5.58 Total: -88.77 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.23 Total: -33.24 kcal Atomic # 14 Polarization: 46.91 SS G_CDS: 1.96 Total: 48.87 kcal Total: -82.72 2.84 -79.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492086059.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.529 kcal (2) G-P(sol) polarization free energy of solvation -82.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds