Wall clock time and date at job start Tue Mar 31 2020 14:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35004 * 125.51973 * 2 1 4 4 C 1.41199 * 108.24202 * 180.02562 * 3 2 1 5 5 N 1.32880 * 126.38170 * 180.02562 * 4 3 2 6 6 C 1.34090 * 119.99977 * 180.02562 * 5 4 3 7 7 O 1.22014 * 119.99881 * 359.97438 * 6 5 4 8 8 C 1.46710 * 119.99919 * 180.02562 * 6 5 4 9 9 C 1.34830 * 119.99974 * 173.21282 * 8 6 5 10 10 C 1.47028 * 120.00158 * 348.66981 * 9 8 6 11 11 C 1.39996 * 120.09456 * 316.41812 * 10 9 8 12 12 C 1.37616 * 119.89659 * 179.74260 * 11 10 9 13 13 C 1.39162 * 120.09859 * 0.53318 * 12 11 10 14 14 O 1.35587 * 119.90072 * 179.74435 * 13 12 11 15 15 C 1.34783 * 116.99909 * 354.33170 * 14 13 12 16 16 H 1.07995 * 119.99885 * 5.06580 * 15 14 13 17 17 C 1.38711 * 119.99719 * 185.05902 * 15 14 13 18 18 N 1.31518 * 120.00333 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99662 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47117 * 60.00106 * 19 17 15 21 21 H 1.48499 * 109.46792 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47328 * 299.99960 * 19 17 15 23 23 C 1.39159 * 120.20161 * 359.71657 * 13 12 11 24 24 C 1.37620 * 120.09746 * 0.02734 * 23 13 12 25 25 N 1.37509 * 107.23312 * 359.76887 * 4 3 2 26 26 H 0.97000 * 126.36381 * 180.21531 * 25 4 3 27 27 N 1.36447 * 125.52322 * 180.02562 * 2 1 3 28 28 C 1.46501 * 125.84995 * 359.96524 * 27 2 1 29 29 H 1.09003 * 109.46941 * 269.99462 * 1 2 3 30 30 H 1.08991 * 109.47571 * 29.99554 * 1 2 3 31 31 H 1.08996 * 109.46812 * 149.99953 * 1 2 3 32 32 H 1.08002 * 125.87615 * 0.02584 * 3 2 1 33 33 H 1.07996 * 119.99564 * 353.20925 * 8 6 5 34 34 H 1.08005 * 120.00139 * 168.66732 * 9 8 6 35 35 H 1.07995 * 120.05440 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.95140 * 180.25049 * 12 11 10 37 37 H 0.96995 * 119.99635 * 180.02562 * 18 17 15 38 38 H 1.08001 * 119.95909 * 179.97438 * 23 13 12 39 39 H 1.08000 * 120.04986 * 179.97438 * 24 23 13 40 40 H 1.08997 * 109.47452 * 89.99523 * 28 27 2 41 41 H 1.09004 * 109.46739 * 329.99573 * 28 27 2 42 42 H 1.08998 * 109.46938 * 209.99702 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0988 0.0000 4 6 3.6396 0.6795 -0.0006 5 7 4.7100 1.4669 -0.0003 6 6 5.9382 0.9288 -0.0015 7 8 6.0729 -0.2839 -0.0023 8 6 7.1199 1.7982 -0.0006 9 6 8.3501 1.2635 0.1362 10 6 8.4999 -0.1447 0.5316 11 6 7.7076 -0.6739 1.5573 12 6 7.8475 -1.9939 1.9205 13 6 8.7824 -2.7994 1.2772 14 8 8.9204 -4.0980 1.6418 15 6 8.2084 -4.5132 2.7082 16 1 7.5034 -3.8449 3.1801 17 6 8.3811 -5.7989 3.1995 18 7 9.2399 -6.6126 2.6250 19 14 7.3937 -6.3745 4.6771 20 1 5.9443 -6.3023 4.3624 21 1 7.7611 -7.7761 5.0022 22 1 7.6915 -5.5025 5.8416 23 6 9.5756 -2.2763 0.2606 24 6 9.4390 -0.9587 -0.1127 25 7 3.6386 -0.6956 0.0043 26 1 4.4192 -1.2713 0.0081 27 7 2.2998 -1.1105 -0.0005 28 6 1.8319 -2.4988 -0.0004 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9468 2.1224 0.0004 33 1 7.0044 2.8664 -0.1096 34 1 9.2256 1.8696 -0.0446 35 1 6.9853 -0.0483 2.0604 36 1 7.2339 -2.4042 2.7090 37 1 9.3603 -7.5117 2.9684 38 1 10.3003 -2.9048 -0.2357 39 1 10.0553 -0.5534 -0.9015 40 1 1.7152 -2.8430 -1.0280 41 1 0.8727 -2.5588 0.5140 42 1 2.5595 -3.1274 0.5130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492233954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:04 Heat of formation + Delta-G solvation = 97.824762 kcal Electronic energy + Delta-G solvation = -26894.317818 eV Core-core repulsion = 23037.185093 eV Total energy + Delta-G solvation = -3857.132725 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.59756 -39.31986 -38.48889 -36.43425 -34.55197 -33.10778 -32.80343 -32.07342 -31.54051 -30.01316 -28.32084 -28.10584 -26.44006 -25.29196 -23.60770 -21.88535 -21.37214 -20.74649 -20.32676 -18.53678 -17.92562 -17.48934 -16.90151 -16.16050 -16.15463 -15.55606 -14.98031 -14.65805 -14.48056 -14.09452 -13.78780 -13.74761 -13.68856 -13.59058 -13.46349 -13.18659 -13.00112 -12.89116 -12.76257 -12.55280 -12.41704 -12.13935 -11.67539 -11.28094 -10.95505 -10.76525 -10.54745 -10.44284 -10.40829 -10.06791 -9.60431 -9.34698 -9.09099 -8.84413 -8.60545 -7.89267 -7.48770 -6.76640 -6.44569 -4.00706 0.90631 1.40756 1.57541 2.40291 2.57896 2.96360 3.09690 3.14001 3.15760 3.62562 3.96131 3.99833 4.38244 4.41227 4.53870 4.71385 4.74503 4.77400 4.94275 5.01058 5.14950 5.27207 5.30687 5.36233 5.47221 5.52697 5.72125 5.82943 5.87013 5.99947 6.08390 6.30718 6.43333 6.56556 6.71262 6.72369 6.83090 6.96704 7.10856 7.17991 7.41146 7.51114 7.54925 7.60459 7.94363 7.98998 8.02704 9.01225 9.02820 9.75362 10.73706 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.003921 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.185620 B = 7139.727633 C = 9517.239700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.172 3.828 3 C -0.272 4.272 4 C 0.475 3.525 5 N -0.646 5.646 6 C 0.508 3.492 7 O -0.566 6.566 8 C -0.214 4.214 9 C -0.007 4.007 10 C -0.172 4.172 11 C 0.015 3.985 12 C -0.246 4.246 13 C 0.168 3.832 14 O -0.177 6.177 15 C -0.390 4.390 16 H 0.090 0.910 17 C 0.039 3.961 18 N -0.863 5.863 19 Si 0.940 3.060 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.270 1.270 23 C -0.210 4.210 24 C -0.050 4.050 25 N -0.484 5.484 26 H 0.456 0.544 27 N -0.392 5.392 28 C 0.093 3.907 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.077 0.923 32 H 0.168 0.832 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.094 0.906 36 H 0.120 0.880 37 H 0.270 0.730 38 H 0.114 0.886 39 H 0.110 0.890 40 H 0.076 0.924 41 H 0.098 0.902 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.928 12.240 -4.992 23.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.051 3.949 3 C -0.303 4.303 4 C 0.223 3.777 5 N -0.407 5.407 6 C 0.300 3.700 7 O -0.448 6.448 8 C -0.235 4.235 9 C -0.026 4.026 10 C -0.173 4.173 11 C -0.004 4.004 12 C -0.266 4.266 13 C 0.114 3.886 14 O -0.080 6.080 15 C -0.466 4.466 16 H 0.107 0.893 17 C -0.165 4.165 18 N -0.498 5.498 19 Si 0.765 3.235 20 H -0.198 1.198 21 H -0.202 1.202 22 H -0.195 1.195 23 C -0.229 4.229 24 C -0.068 4.068 25 N -0.224 5.224 26 H 0.315 0.685 27 N -0.182 5.182 28 C -0.048 4.048 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.095 0.905 32 H 0.186 0.814 33 H 0.142 0.858 34 H 0.137 0.863 35 H 0.112 0.888 36 H 0.138 0.862 37 H 0.080 0.920 38 H 0.132 0.868 39 H 0.128 0.872 40 H 0.095 0.905 41 H 0.116 0.884 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -18.355 11.393 -5.047 22.185 hybrid contribution -0.007 -1.198 0.728 1.402 sum -18.362 10.194 -4.319 21.441 Atomic orbital electron populations 1.20654 0.85812 1.04796 1.04288 1.21026 0.94095 0.85128 0.94641 1.20535 0.88744 0.99360 1.21661 1.20815 0.95526 0.77490 0.83865 1.70203 0.97227 1.31330 1.41930 1.19726 0.88269 0.86842 0.75154 1.90625 1.88619 1.17057 1.48529 1.22474 0.91813 0.99326 1.09838 1.22288 0.96099 0.93938 0.90302 1.18327 1.02928 0.93467 1.02543 1.20545 0.92636 0.93859 0.93359 1.20920 1.04657 0.94693 1.06301 1.19498 0.92115 0.84653 0.92365 1.83911 1.60571 1.19584 1.43969 1.21293 1.20521 0.98416 1.06374 0.89254 1.25280 0.97262 0.95124 0.98871 1.70015 1.32936 1.07126 1.39710 0.85805 0.79201 0.78215 0.80318 1.19753 1.20210 1.19464 1.19991 1.04607 0.95729 1.02585 1.20651 0.95913 0.92861 0.97402 1.47620 0.96747 1.08255 1.69759 0.68474 1.46685 0.96376 1.06169 1.68951 1.22127 1.01591 0.77208 1.03888 0.89091 0.88406 0.90454 0.81434 0.85773 0.86283 0.88752 0.86192 0.92001 0.86780 0.87228 0.90509 0.88358 0.89073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.30 9.86 36.01 0.36 0.06 16 2 C 0.17 1.40 6.93 -81.69 -0.57 0.83 16 3 C -0.27 -2.94 10.71 -39.61 -0.42 -3.37 16 4 C 0.47 7.21 7.73 -155.26 -1.20 6.01 16 5 N -0.65 -11.35 10.53 -12.48 -0.13 -11.48 16 6 C 0.51 9.69 6.70 -13.15 -0.09 9.61 16 7 O -0.57 -11.87 9.56 4.91 0.05 -11.83 16 8 C -0.21 -3.63 10.01 -37.37 -0.37 -4.00 16 9 C -0.01 -0.11 9.80 -37.23 -0.36 -0.48 16 10 C -0.17 -3.49 4.54 -105.02 -0.48 -3.97 16 11 C 0.01 0.32 6.58 -39.15 -0.26 0.06 16 12 C -0.25 -5.97 9.14 -39.47 -0.36 -6.33 16 13 C 0.17 4.38 6.66 -38.90 -0.26 4.12 16 14 O -0.18 -5.29 9.74 0.68 0.01 -5.29 16 15 C -0.39 -11.28 9.48 30.91 0.29 -10.98 16 16 H 0.09 2.42 5.18 -52.49 -0.27 2.15 16 17 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 18 N -0.86 -25.76 13.67 55.48 0.76 -25.00 16 19 Si 0.94 20.85 29.55 -169.99 -5.02 15.82 16 20 H -0.27 -5.80 7.11 56.52 0.40 -5.39 16 21 H -0.28 -5.97 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.42 16 23 C -0.21 -4.89 9.97 -39.46 -0.39 -5.28 16 24 C -0.05 -1.02 9.78 -39.15 -0.38 -1.40 16 25 N -0.48 -6.99 6.92 31.34 0.22 -6.78 16 26 H 0.46 7.62 6.35 -182.55 -1.16 6.46 16 27 N -0.39 -3.88 4.05 -63.60 -0.26 -4.13 16 28 C 0.09 0.56 11.07 59.85 0.66 1.22 16 29 H 0.09 0.19 8.14 -51.93 -0.42 -0.24 16 30 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.13 7.68 -51.93 -0.40 -0.27 16 32 H 0.17 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.12 1.80 8.06 -52.49 -0.42 1.38 16 34 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 35 H 0.09 2.01 7.02 -52.49 -0.37 1.64 16 36 H 0.12 2.91 5.62 -52.48 -0.29 2.61 16 37 H 0.27 7.38 8.31 -40.82 -0.34 7.05 16 38 H 0.11 2.54 8.06 -52.49 -0.42 2.12 16 39 H 0.11 1.87 8.06 -52.49 -0.42 1.45 16 40 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.10 0.28 7.62 -51.93 -0.40 -0.11 16 42 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 360.46 15.07 5.43 5.43 Total: -1.00 -37.46 360.46 -8.72 -46.17 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: -5.83 Total: 9.99 kcal Atomic # 6 Polarization: -8.98 SS G_CDS: -3.93 Total: -12.91 kcal Atomic # 7 Polarization: -47.98 SS G_CDS: 0.59 Total: -47.40 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.05 Total: -17.12 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.46 -8.72 -46.17 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492233954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.996 kcal (2) G-P(sol) polarization free energy of solvation -37.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds