Wall clock time and date at job start Tue Mar 31 2020 14:53:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35004 * 125.51973 * 2 1 4 4 C 1.41199 * 108.24202 * 180.02562 * 3 2 1 5 5 N 1.32880 * 126.38170 * 180.02562 * 4 3 2 6 6 C 1.34090 * 119.99977 * 180.02562 * 5 4 3 7 7 O 1.22014 * 119.99881 * 359.97438 * 6 5 4 8 8 C 1.46710 * 119.99919 * 180.02562 * 6 5 4 9 9 C 1.34830 * 119.99974 * 173.21282 * 8 6 5 10 10 C 1.47028 * 120.00158 * 348.66981 * 9 8 6 11 11 C 1.39996 * 120.09456 * 316.41812 * 10 9 8 12 12 C 1.37616 * 119.89659 * 179.74260 * 11 10 9 13 13 C 1.39162 * 120.09859 * 0.53318 * 12 11 10 14 14 O 1.35587 * 119.90072 * 179.74435 * 13 12 11 15 15 C 1.34783 * 116.99909 * 354.33170 * 14 13 12 16 16 H 1.07995 * 119.99885 * 5.06580 * 15 14 13 17 17 C 1.38711 * 119.99719 * 185.05902 * 15 14 13 18 18 N 1.31518 * 120.00333 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99662 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47117 * 60.00106 * 19 17 15 21 21 H 1.48499 * 109.46792 * 180.02562 * 19 17 15 22 22 H 1.48499 * 109.47328 * 299.99960 * 19 17 15 23 23 C 1.39159 * 120.20161 * 359.71657 * 13 12 11 24 24 C 1.37620 * 120.09746 * 0.02734 * 23 13 12 25 25 N 1.37509 * 107.23312 * 359.76887 * 4 3 2 26 26 H 0.97000 * 126.36381 * 180.21531 * 25 4 3 27 27 N 1.36447 * 125.52322 * 180.02562 * 2 1 3 28 28 C 1.46501 * 125.84995 * 359.96524 * 27 2 1 29 29 H 1.09003 * 109.46941 * 269.99462 * 1 2 3 30 30 H 1.08991 * 109.47571 * 29.99554 * 1 2 3 31 31 H 1.08996 * 109.46812 * 149.99953 * 1 2 3 32 32 H 1.08002 * 125.87615 * 0.02584 * 3 2 1 33 33 H 1.07996 * 119.99564 * 353.20925 * 8 6 5 34 34 H 1.08005 * 120.00139 * 168.66732 * 9 8 6 35 35 H 1.07995 * 120.05440 * 359.97438 * 11 10 9 36 36 H 1.08004 * 119.95140 * 180.25049 * 12 11 10 37 37 H 0.96995 * 119.99635 * 180.02562 * 18 17 15 38 38 H 1.08001 * 119.95909 * 179.97438 * 23 13 12 39 39 H 1.08000 * 120.04986 * 179.97438 * 24 23 13 40 40 H 1.08997 * 109.47452 * 89.99523 * 28 27 2 41 41 H 1.09004 * 109.46739 * 329.99573 * 28 27 2 42 42 H 1.08998 * 109.46938 * 209.99702 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2913 1.0988 0.0000 4 6 3.6396 0.6795 -0.0006 5 7 4.7100 1.4669 -0.0003 6 6 5.9382 0.9288 -0.0015 7 8 6.0729 -0.2839 -0.0023 8 6 7.1199 1.7982 -0.0006 9 6 8.3501 1.2635 0.1362 10 6 8.4999 -0.1447 0.5316 11 6 7.7076 -0.6739 1.5573 12 6 7.8475 -1.9939 1.9205 13 6 8.7824 -2.7994 1.2772 14 8 8.9204 -4.0980 1.6418 15 6 8.2084 -4.5132 2.7082 16 1 7.5034 -3.8449 3.1801 17 6 8.3811 -5.7989 3.1995 18 7 9.2399 -6.6126 2.6250 19 14 7.3937 -6.3745 4.6771 20 1 5.9443 -6.3023 4.3624 21 1 7.7611 -7.7761 5.0022 22 1 7.6915 -5.5025 5.8416 23 6 9.5756 -2.2763 0.2606 24 6 9.4390 -0.9587 -0.1127 25 7 3.6386 -0.6956 0.0043 26 1 4.4192 -1.2713 0.0081 27 7 2.2998 -1.1105 -0.0005 28 6 1.8319 -2.4988 -0.0004 29 1 -0.3633 -0.0001 1.0277 30 1 -0.3634 0.8899 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9468 2.1224 0.0004 33 1 7.0044 2.8664 -0.1096 34 1 9.2256 1.8696 -0.0446 35 1 6.9853 -0.0483 2.0604 36 1 7.2339 -2.4042 2.7090 37 1 9.3603 -7.5117 2.9684 38 1 10.3003 -2.9048 -0.2357 39 1 10.0553 -0.5534 -0.9015 40 1 1.7152 -2.8430 -1.0280 41 1 0.8727 -2.5588 0.5140 42 1 2.5595 -3.1274 0.5130 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492233954.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:03 Heat of formation + Delta-G solvation = 71.488045 kcal Electronic energy + Delta-G solvation = -26895.459864 eV Core-core repulsion = 23037.185093 eV Total energy + Delta-G solvation = -3858.274771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.54149 -40.95323 -40.10339 -38.20041 -35.64193 -34.56599 -33.95426 -33.72309 -32.57411 -31.81922 -29.77530 -28.88656 -27.54934 -27.11523 -24.93787 -23.60060 -22.95630 -21.69508 -21.41319 -19.94827 -19.76875 -19.00339 -18.44912 -17.35352 -16.98516 -16.78611 -16.45818 -16.24483 -16.04884 -15.64730 -15.52769 -15.19723 -14.89056 -14.47491 -14.40554 -14.35681 -14.09219 -13.95215 -13.88934 -13.60451 -13.57560 -13.51692 -13.04056 -12.90275 -12.63562 -12.48672 -12.24599 -12.19022 -11.43994 -11.38872 -11.27083 -10.93732 -10.49081 -10.35100 -10.21794 -9.62399 -8.62279 -8.53512 -8.50369 -6.19852 -0.26367 0.37641 0.54576 0.68809 1.09512 1.27539 1.39858 1.45249 1.69396 2.12464 2.73208 2.81993 3.07956 3.18840 3.22042 3.47355 3.66266 3.88128 4.01067 4.05785 4.12153 4.21592 4.26068 4.45054 4.51988 4.53720 4.63517 4.73329 4.75766 4.80659 4.85704 5.01743 5.06883 5.16523 5.17354 5.21616 5.34238 5.42982 5.61732 5.68255 5.70665 5.89380 5.97328 5.99069 6.21010 6.39423 6.71592 6.90939 7.72397 7.74204 8.70272 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009666 B = 0.003921 C = 0.002941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2896.185620 B = 7139.727633 C = 9517.239700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.201 3.799 3 C -0.295 4.295 4 C 0.444 3.556 5 N -0.670 5.670 6 C 0.487 3.513 7 O -0.606 6.606 8 C -0.201 4.201 9 C -0.017 4.017 10 C -0.151 4.151 11 C 0.014 3.986 12 C -0.254 4.254 13 C 0.129 3.871 14 O -0.227 6.227 15 C -0.418 4.418 16 H 0.094 0.906 17 C -0.020 4.020 18 N -0.918 5.918 19 Si 1.019 2.981 20 H -0.257 1.257 21 H -0.265 1.265 22 H -0.260 1.260 23 C -0.219 4.219 24 C -0.047 4.047 25 N -0.505 5.505 26 H 0.443 0.557 27 N -0.384 5.384 28 C 0.080 3.920 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.100 0.900 32 H 0.187 0.813 33 H 0.153 0.847 34 H 0.166 0.834 35 H 0.098 0.902 36 H 0.108 0.892 37 H 0.275 0.725 38 H 0.116 0.884 39 H 0.154 0.846 40 H 0.093 0.907 41 H 0.142 0.858 42 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.326 14.388 -5.199 27.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.078 3.922 3 C -0.324 4.324 4 C 0.196 3.804 5 N -0.433 5.433 6 C 0.279 3.721 7 O -0.491 6.491 8 C -0.221 4.221 9 C -0.036 4.036 10 C -0.151 4.151 11 C -0.004 4.004 12 C -0.273 4.273 13 C 0.078 3.922 14 O -0.133 6.133 15 C -0.494 4.494 16 H 0.111 0.889 17 C -0.217 4.217 18 N -0.555 5.555 19 Si 0.837 3.163 20 H -0.181 1.181 21 H -0.189 1.189 22 H -0.184 1.184 23 C -0.239 4.239 24 C -0.065 4.065 25 N -0.239 5.239 26 H 0.299 0.701 27 N -0.174 5.174 28 C -0.059 4.059 29 H 0.130 0.870 30 H 0.135 0.865 31 H 0.119 0.881 32 H 0.204 0.796 33 H 0.171 0.829 34 H 0.183 0.817 35 H 0.116 0.884 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.134 0.866 39 H 0.171 0.829 40 H 0.112 0.888 41 H 0.160 0.840 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -21.818 13.586 -5.281 26.239 hybrid contribution 0.739 -1.616 0.592 1.873 sum -21.078 11.970 -4.689 24.690 Atomic orbital electron populations 1.20965 0.81189 1.06953 1.06162 1.21950 0.96219 0.83456 0.90611 1.20850 0.87035 1.01263 1.23292 1.21367 0.96725 0.77875 0.84466 1.70164 0.97251 1.32074 1.43775 1.20273 0.89671 0.86808 0.75375 1.90614 1.89070 1.18282 1.51156 1.22829 0.91083 1.00497 1.07692 1.22528 0.97870 0.92063 0.91149 1.18815 1.00562 0.95456 1.00309 1.20610 0.92921 0.92836 0.94044 1.20904 1.04489 0.95717 1.06239 1.19956 0.93891 0.84290 0.94064 1.83878 1.62495 1.21553 1.45413 1.21744 1.21280 0.99357 1.07033 0.88877 1.26609 0.98375 0.94599 1.02150 1.70158 1.35435 1.07804 1.42153 0.84668 0.77883 0.78011 0.75712 1.18134 1.18935 1.18399 1.20281 1.04358 0.97210 1.02001 1.21088 0.96148 0.91415 0.97864 1.47677 0.98709 1.08327 1.69167 0.70104 1.47327 0.94576 1.08234 1.67241 1.22568 1.02863 0.74954 1.05478 0.86985 0.86451 0.88118 0.79556 0.82919 0.81667 0.88414 0.87426 0.91619 0.86579 0.82885 0.88836 0.83976 0.90621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.09 9.86 71.24 0.70 0.61 16 2 C 0.20 2.66 6.93 41.10 0.28 2.94 16 3 C -0.29 -5.90 10.71 22.25 0.24 -5.66 16 4 C 0.44 13.55 7.73 133.93 1.04 14.58 16 5 N -0.67 -23.72 10.53 -311.87 -3.28 -27.00 16 6 C 0.49 18.68 6.70 86.56 0.58 19.26 16 7 O -0.61 -26.25 9.56 -5.36 -0.05 -26.30 16 8 C -0.20 -6.44 10.01 23.70 0.24 -6.20 16 9 C -0.02 -0.52 9.80 23.79 0.23 -0.29 16 10 C -0.15 -6.01 4.54 -20.12 -0.09 -6.10 16 11 C 0.01 0.65 6.58 22.55 0.15 0.80 16 12 C -0.25 -13.07 9.14 22.34 0.20 -12.87 16 13 C 0.13 7.16 6.66 22.71 0.15 7.32 16 14 O -0.23 -14.62 9.74 -20.47 -0.20 -14.82 16 15 C -0.42 -25.81 9.48 67.93 0.64 -25.17 16 16 H 0.09 5.41 5.18 -2.91 -0.02 5.40 16 17 C -0.02 -1.15 5.49 84.85 0.47 -0.68 16 18 N -0.92 -57.73 13.67 21.62 0.30 -57.44 16 19 Si 1.02 44.00 29.55 68.60 2.03 46.03 16 20 H -0.26 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 22 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 23 C -0.22 -10.58 9.97 22.35 0.22 -10.35 16 24 C -0.05 -1.89 9.78 22.55 0.22 -1.67 16 25 N -0.50 -14.86 6.92 -54.77 -0.38 -15.23 16 26 H 0.44 15.75 6.35 -213.28 -1.36 14.40 16 27 N -0.38 -6.95 4.05 -355.12 -1.44 -8.39 16 28 C 0.08 0.78 11.07 127.77 1.41 2.20 16 29 H 0.11 -0.18 8.14 -2.39 -0.02 -0.20 16 30 H 0.12 -0.20 8.14 -2.39 -0.02 -0.22 16 31 H 0.10 -0.27 7.68 -2.39 -0.02 -0.28 16 32 H 0.19 2.84 8.06 -2.91 -0.02 2.82 16 33 H 0.15 3.98 8.06 -2.91 -0.02 3.96 16 34 H 0.17 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.10 4.28 7.02 -2.91 -0.02 4.26 16 36 H 0.11 5.64 5.62 -2.91 -0.02 5.63 16 37 H 0.27 15.73 8.31 -92.71 -0.77 14.95 16 38 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 39 H 0.15 4.75 8.06 -2.91 -0.02 4.73 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.14 0.18 7.62 -2.38 -0.02 0.16 16 42 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -91.20 360.46 3.38 -87.83 By element: Atomic # 1 Polarization: 36.90 SS G_CDS: -0.29 Total: 36.61 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 6.69 Total: -21.29 kcal Atomic # 7 Polarization: -103.26 SS G_CDS: -4.81 Total: -108.06 kcal Atomic # 8 Polarization: -40.87 SS G_CDS: -0.25 Total: -41.12 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -91.20 3.38 -87.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492233954.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.315 kcal (2) G-P(sol) polarization free energy of solvation -91.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.827 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds