Wall clock time and date at job start Tue Mar 31 2020 15:01:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38282 * 126.31490 * 2 1 4 4 C 1.46959 * 126.44628 * 359.97050 * 3 2 1 5 5 C 1.35065 * 120.00325 * 179.72090 * 4 3 2 6 6 C 1.41782 * 120.00456 * 180.02562 * 5 4 3 7 7 O 1.21752 * 119.99343 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00348 * 180.02562 * 6 5 4 9 9 C 1.39823 * 119.99844 * 175.50044 * 8 6 5 10 10 C 1.38989 * 120.03419 * 215.15015 * 9 8 6 11 11 C 1.38149 * 120.06465 * 179.97438 * 10 9 8 12 12 C 1.38183 * 120.13882 * 359.76554 * 11 10 9 13 13 C 1.38914 * 120.07262 * 0.51351 * 12 11 10 14 14 O 1.35745 * 120.02622 * 179.74008 * 13 12 11 15 15 C 1.34833 * 117.00473 * 354.34786 * 14 13 12 16 16 H 1.07996 * 119.99835 * 5.03180 * 15 14 13 17 17 C 1.38652 * 120.00108 * 185.02594 * 15 14 13 18 18 N 1.31555 * 120.00039 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99974 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46887 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47457 * 119.99757 * 19 17 15 22 22 H 1.48503 * 109.47002 * 239.99935 * 19 17 15 23 23 C 1.38735 * 120.04380 * 35.13519 * 9 8 6 24 24 C 1.41442 * 107.11177 * 179.71246 * 3 2 1 25 25 N 1.30442 * 108.04114 * 0.25883 * 24 3 2 26 26 N 1.34402 * 126.31903 * 180.15655 * 2 1 3 27 27 C 1.46506 * 125.74140 * 0.02619 * 26 2 1 28 28 H 1.09007 * 109.46607 * 90.00646 * 1 2 3 29 29 H 1.08997 * 109.47595 * 210.00339 * 1 2 3 30 30 H 1.08998 * 109.47229 * 330.00832 * 1 2 3 31 31 H 1.08000 * 120.00095 * 359.71217 * 4 3 2 32 32 H 1.08000 * 119.99580 * 359.97438 * 5 4 3 33 33 H 0.96999 * 119.99483 * 355.49353 * 8 6 5 34 34 H 1.08001 * 119.97078 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.92962 * 180.02562 * 11 10 9 36 36 H 1.08002 * 119.95966 * 180.27717 * 12 11 10 37 37 H 0.97007 * 119.99898 * 179.97438 * 18 17 15 38 38 H 1.08004 * 120.06706 * 0.04088 * 23 9 8 39 39 H 1.08007 * 125.97937 * 180.28325 * 24 3 2 40 40 H 1.09001 * 109.46574 * 270.28855 * 27 26 2 41 41 H 1.08999 * 109.47166 * 30.28252 * 27 26 2 42 42 H 1.08998 * 109.46744 * 150.29111 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1142 0.0000 4 6 1.8905 2.5178 -0.0006 5 6 2.8074 3.5095 0.0052 6 6 2.3873 4.8636 0.0051 7 8 1.1998 5.1325 -0.0006 8 7 3.3023 5.8532 0.0104 9 6 2.8909 7.1862 -0.0847 10 6 3.6675 8.1060 -0.7794 11 6 3.2615 9.4230 -0.8741 12 6 2.0803 9.8291 -0.2831 13 6 1.3026 8.9159 0.4176 14 8 0.1451 9.3171 1.0023 15 6 -0.1340 10.6357 0.9665 16 1 0.5080 11.3088 0.4179 17 6 -1.2455 11.1275 1.6338 18 7 -2.0280 10.3074 2.3015 19 14 -1.6326 12.9542 1.5834 20 1 -0.6064 13.6554 0.7707 21 1 -2.9716 13.1600 0.9754 22 1 -1.6270 13.4996 2.9647 23 6 1.7071 7.5921 0.5141 24 6 3.6617 0.6490 0.0068 25 7 3.6353 -0.6551 0.0050 26 7 2.3031 -1.0829 -0.0030 27 6 1.8518 -2.4767 -0.0073 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 0.8372 2.7564 -0.0058 32 1 3.8607 3.2709 0.0107 33 1 4.2461 5.6405 0.0802 34 1 4.5893 7.7908 -1.2457 35 1 3.8664 10.1358 -1.4148 36 1 1.7634 10.8585 -0.3627 37 1 -2.8054 10.6516 2.7687 38 1 1.1021 6.8794 1.0549 39 1 4.5484 1.2657 0.0129 40 1 1.7346 -2.8238 1.0193 41 1 0.8958 -2.5475 -0.5261 42 1 2.5893 -3.0957 -0.5182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492249681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:51 Heat of formation + Delta-G solvation = 63.255380 kcal Electronic energy + Delta-G solvation = -25546.087874 eV Core-core repulsion = 21687.456108 eV Total energy + Delta-G solvation = -3858.631766 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61821 -40.08821 -38.54852 -36.50399 -34.65728 -33.93298 -33.51837 -32.17706 -31.57791 -29.45196 -28.54624 -27.29368 -26.99925 -25.24420 -23.95054 -22.15222 -21.43563 -20.83917 -19.88008 -19.18438 -18.08859 -17.32013 -16.91295 -16.63372 -16.12042 -15.46819 -14.97892 -14.83015 -14.80144 -14.58736 -14.19196 -13.92753 -13.73272 -13.67156 -13.43753 -13.42153 -12.98920 -12.97977 -12.72268 -12.44033 -12.34638 -12.07439 -11.67342 -11.44211 -11.12512 -10.96976 -10.92100 -10.69815 -10.48815 -10.39490 -9.72865 -9.67740 -9.61741 -9.07165 -8.75680 -8.15263 -7.56508 -7.08693 -6.35907 -3.94668 0.75065 1.62327 2.02681 2.21589 2.43712 2.74892 3.17916 3.18924 3.24839 3.51803 3.70487 4.03026 4.06695 4.16119 4.49486 4.63804 4.67455 4.75715 4.87202 4.91120 5.01161 5.05614 5.19035 5.23067 5.37802 5.42258 5.48687 5.59161 5.71281 5.92978 6.14887 6.18707 6.27253 6.31505 6.36971 6.49566 6.54431 6.82777 7.02792 7.12893 7.18947 7.28380 7.43014 7.56957 7.86874 7.90511 8.09708 8.54861 9.09335 9.82247 10.82306 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019613 B = 0.002132 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.310938 B =13130.929754 C =14410.233134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.118 3.882 3 C -0.236 4.236 4 C 0.041 3.959 5 C -0.239 4.239 6 C 0.545 3.455 7 O -0.524 6.524 8 N -0.668 5.668 9 C 0.177 3.823 10 C -0.236 4.236 11 C -0.060 4.060 12 C -0.247 4.247 13 C 0.166 3.834 14 O -0.175 6.175 15 C -0.390 4.390 16 H 0.093 0.907 17 C 0.037 3.963 18 N -0.862 5.862 19 Si 0.941 3.059 20 H -0.267 1.267 21 H -0.277 1.277 22 H -0.277 1.277 23 C -0.186 4.186 24 C 0.078 3.922 25 N -0.302 5.302 26 N -0.366 5.366 27 C 0.096 3.904 28 H 0.088 0.912 29 H 0.075 0.925 30 H 0.095 0.905 31 H 0.136 0.864 32 H 0.123 0.877 33 H 0.405 0.595 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.127 0.873 37 H 0.268 0.732 38 H 0.135 0.865 39 H 0.190 0.810 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.612 -22.235 -5.080 24.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.013 4.013 3 C -0.247 4.247 4 C 0.019 3.981 5 C -0.261 4.261 6 C 0.337 3.663 7 O -0.402 6.402 8 N -0.312 5.312 9 C 0.083 3.917 10 C -0.257 4.257 11 C -0.079 4.079 12 C -0.267 4.267 13 C 0.111 3.889 14 O -0.078 6.078 15 C -0.466 4.466 16 H 0.110 0.890 17 C -0.167 4.167 18 N -0.497 5.497 19 Si 0.766 3.234 20 H -0.191 1.191 21 H -0.202 1.202 22 H -0.202 1.202 23 C -0.207 4.207 24 C -0.108 4.108 25 N -0.122 5.122 26 N -0.145 5.145 27 C -0.045 4.045 28 H 0.107 0.893 29 H 0.094 0.906 30 H 0.114 0.886 31 H 0.153 0.847 32 H 0.141 0.859 33 H 0.240 0.760 34 H 0.126 0.874 35 H 0.129 0.871 36 H 0.145 0.855 37 H 0.078 0.922 38 H 0.152 0.848 39 H 0.206 0.794 40 H 0.096 0.904 41 H 0.108 0.892 42 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 9.040 -23.471 -4.834 25.612 hybrid contribution 0.049 1.514 -0.046 1.515 sum 9.089 -21.957 -4.880 24.260 Atomic orbital electron populations 1.20609 0.86406 1.04745 1.04108 1.21738 0.94725 0.86936 0.97879 1.19188 0.92199 0.92879 1.20419 1.21619 0.99913 0.88535 0.87984 1.21586 1.00383 0.92196 1.11921 1.17185 0.86121 0.85966 0.77073 1.90898 1.16477 1.84592 1.48218 1.43302 1.10091 1.04704 1.73122 1.17191 0.95254 0.82404 0.96847 1.20291 1.02841 0.94069 1.08533 1.20492 0.95362 0.94624 0.97408 1.21173 0.97967 1.00900 1.06626 1.19157 0.86317 0.92348 0.91029 1.83994 1.30899 1.26713 1.66215 1.21392 1.11348 0.80655 1.33226 0.88978 1.25298 0.95412 1.00233 0.95724 1.70070 1.14449 1.34843 1.30323 0.85646 0.78739 0.80663 0.78342 1.19106 1.20218 1.20225 1.20202 0.98932 0.94599 1.06964 1.24121 0.97684 0.91634 0.97399 1.77157 0.96043 1.13564 1.25390 1.48307 1.04088 1.06277 1.55876 1.21938 1.01264 0.77533 1.03742 0.89348 0.90629 0.88589 0.84664 0.85897 0.75997 0.87438 0.87149 0.85542 0.92163 0.84763 0.79358 0.90369 0.89199 0.88918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.57 9.70 36.01 0.35 -0.22 16 2 C 0.12 1.03 7.02 -81.45 -0.57 0.46 16 3 C -0.24 -2.41 6.08 -105.13 -0.64 -3.05 16 4 C 0.04 0.46 9.33 -37.18 -0.35 0.12 16 5 C -0.24 -2.83 9.33 -39.36 -0.37 -3.20 16 6 C 0.54 8.87 7.41 -14.91 -0.11 8.76 16 7 O -0.52 -11.00 13.54 5.14 0.07 -10.93 16 8 N -0.67 -10.26 5.32 -12.44 -0.07 -10.33 16 9 C 0.18 3.45 6.29 -83.75 -0.53 2.92 16 10 C -0.24 -4.22 9.96 -39.34 -0.39 -4.61 16 11 C -0.06 -1.14 10.03 -39.63 -0.40 -1.53 16 12 C -0.25 -5.61 9.17 -39.35 -0.36 -5.97 16 13 C 0.17 4.31 6.64 -39.14 -0.26 4.05 16 14 O -0.18 -5.29 9.75 0.06 0.00 -5.29 16 15 C -0.39 -11.30 9.49 30.89 0.29 -11.01 16 16 H 0.09 2.46 5.20 -52.49 -0.27 2.19 16 17 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 18 N -0.86 -26.15 13.67 55.48 0.76 -25.39 16 19 Si 0.94 21.09 29.55 -169.99 -5.02 16.07 16 20 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 21 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 23 C -0.19 -4.44 8.63 -39.21 -0.34 -4.77 16 24 C 0.08 0.76 11.39 -16.92 -0.19 0.57 16 25 N -0.30 -3.23 12.49 30.89 0.39 -2.84 16 26 N -0.37 -3.16 3.98 -63.24 -0.25 -3.41 16 27 C 0.10 0.40 11.06 59.85 0.66 1.07 16 28 H 0.09 0.41 8.14 -51.92 -0.42 -0.01 16 29 H 0.07 0.27 7.72 -51.93 -0.40 -0.13 16 30 H 0.10 0.58 7.61 -51.93 -0.40 0.19 16 31 H 0.14 1.64 7.02 -52.49 -0.37 1.27 16 32 H 0.12 1.03 6.93 -52.49 -0.36 0.67 16 33 H 0.41 4.44 8.78 -40.82 -0.36 4.09 16 34 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 35 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 36 H 0.13 2.85 5.63 -52.49 -0.30 2.55 16 37 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 38 H 0.13 3.43 6.23 -52.48 -0.33 3.11 16 39 H 0.19 1.29 7.31 -52.48 -0.38 0.91 16 40 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 41 H 0.09 0.17 7.64 -51.93 -0.40 -0.22 16 42 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 LS Contribution 365.60 15.07 5.51 5.51 Total: -1.00 -38.11 365.60 -6.72 -44.84 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -4.81 Total: 7.23 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: -3.30 Total: -15.45 kcal Atomic # 7 Polarization: -42.80 SS G_CDS: 0.83 Total: -41.97 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.07 Total: -16.21 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -38.11 -6.72 -44.84 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492249681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.093 kcal (2) G-P(sol) polarization free energy of solvation -38.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds