Wall clock time and date at job start Tue Mar 31 2020 15:01:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38282 * 126.31490 * 2 1 4 4 C 1.46959 * 126.44628 * 359.97050 * 3 2 1 5 5 C 1.35065 * 120.00325 * 179.72090 * 4 3 2 6 6 C 1.41782 * 120.00456 * 180.02562 * 5 4 3 7 7 O 1.21752 * 119.99343 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00348 * 180.02562 * 6 5 4 9 9 C 1.39823 * 119.99844 * 175.50044 * 8 6 5 10 10 C 1.38989 * 120.03419 * 215.15015 * 9 8 6 11 11 C 1.38149 * 120.06465 * 179.97438 * 10 9 8 12 12 C 1.38183 * 120.13882 * 359.76554 * 11 10 9 13 13 C 1.38914 * 120.07262 * 0.51351 * 12 11 10 14 14 O 1.35745 * 120.02622 * 179.74008 * 13 12 11 15 15 C 1.34833 * 117.00473 * 354.34786 * 14 13 12 16 16 H 1.07996 * 119.99835 * 5.03180 * 15 14 13 17 17 C 1.38652 * 120.00108 * 185.02594 * 15 14 13 18 18 N 1.31555 * 120.00039 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 119.99974 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46887 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47457 * 119.99757 * 19 17 15 22 22 H 1.48503 * 109.47002 * 239.99935 * 19 17 15 23 23 C 1.38735 * 120.04380 * 35.13519 * 9 8 6 24 24 C 1.41442 * 107.11177 * 179.71246 * 3 2 1 25 25 N 1.30442 * 108.04114 * 0.25883 * 24 3 2 26 26 N 1.34402 * 126.31903 * 180.15655 * 2 1 3 27 27 C 1.46506 * 125.74140 * 0.02619 * 26 2 1 28 28 H 1.09007 * 109.46607 * 90.00646 * 1 2 3 29 29 H 1.08997 * 109.47595 * 210.00339 * 1 2 3 30 30 H 1.08998 * 109.47229 * 330.00832 * 1 2 3 31 31 H 1.08000 * 120.00095 * 359.71217 * 4 3 2 32 32 H 1.08000 * 119.99580 * 359.97438 * 5 4 3 33 33 H 0.96999 * 119.99483 * 355.49353 * 8 6 5 34 34 H 1.08001 * 119.97078 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.92962 * 180.02562 * 11 10 9 36 36 H 1.08002 * 119.95966 * 180.27717 * 12 11 10 37 37 H 0.97007 * 119.99898 * 179.97438 * 18 17 15 38 38 H 1.08004 * 120.06706 * 0.04088 * 23 9 8 39 39 H 1.08007 * 125.97937 * 180.28325 * 24 3 2 40 40 H 1.09001 * 109.46574 * 270.28855 * 27 26 2 41 41 H 1.08999 * 109.47166 * 30.28252 * 27 26 2 42 42 H 1.08998 * 109.46744 * 150.29111 * 27 26 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1142 0.0000 4 6 1.8905 2.5178 -0.0006 5 6 2.8074 3.5095 0.0052 6 6 2.3873 4.8636 0.0051 7 8 1.1998 5.1325 -0.0006 8 7 3.3023 5.8532 0.0104 9 6 2.8909 7.1862 -0.0847 10 6 3.6675 8.1060 -0.7794 11 6 3.2615 9.4230 -0.8741 12 6 2.0803 9.8291 -0.2831 13 6 1.3026 8.9159 0.4176 14 8 0.1451 9.3171 1.0023 15 6 -0.1340 10.6357 0.9665 16 1 0.5080 11.3088 0.4179 17 6 -1.2455 11.1275 1.6338 18 7 -2.0280 10.3074 2.3015 19 14 -1.6326 12.9542 1.5834 20 1 -0.6064 13.6554 0.7707 21 1 -2.9716 13.1600 0.9754 22 1 -1.6270 13.4996 2.9647 23 6 1.7071 7.5921 0.5141 24 6 3.6617 0.6490 0.0068 25 7 3.6353 -0.6551 0.0050 26 7 2.3031 -1.0829 -0.0030 27 6 1.8518 -2.4767 -0.0073 28 1 -0.3633 -0.0001 -1.0278 29 1 -0.3634 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5137 31 1 0.8372 2.7564 -0.0058 32 1 3.8607 3.2709 0.0107 33 1 4.2461 5.6405 0.0802 34 1 4.5893 7.7908 -1.2457 35 1 3.8664 10.1358 -1.4148 36 1 1.7634 10.8585 -0.3627 37 1 -2.8054 10.6516 2.7687 38 1 1.1021 6.8794 1.0549 39 1 4.5484 1.2657 0.0129 40 1 1.7346 -2.8238 1.0193 41 1 0.8958 -2.5475 -0.5261 42 1 2.5893 -3.0957 -0.5182 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492249681.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:50 Heat of formation + Delta-G solvation = 36.007540 kcal Electronic energy + Delta-G solvation = -25547.269429 eV Core-core repulsion = 21687.456108 eV Total energy + Delta-G solvation = -3859.813321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.30313 -41.53628 -40.31656 -38.23193 -35.54205 -35.38766 -34.24077 -34.20351 -32.33619 -31.10928 -30.09729 -28.03598 -27.63457 -27.27275 -25.07442 -23.54545 -22.93587 -22.02403 -20.75443 -20.24637 -19.82332 -19.02383 -18.13165 -17.54186 -16.93304 -16.72914 -16.69378 -16.37725 -15.99962 -15.87184 -15.44781 -15.41745 -15.25450 -14.71781 -14.35084 -14.25195 -14.16065 -14.08350 -13.57657 -13.48290 -13.33772 -13.16763 -12.99212 -12.94903 -12.83903 -12.67281 -12.32919 -12.07816 -11.65213 -11.42428 -11.37351 -11.22164 -10.77794 -10.71216 -10.36534 -9.32596 -8.98447 -8.74896 -8.44948 -6.14283 -0.18012 0.55570 0.73970 0.93169 1.35453 1.45098 1.49080 1.55396 1.83388 2.15929 2.28572 2.55739 2.87549 3.18984 3.44521 3.57432 3.60601 3.97701 4.00799 4.15932 4.19101 4.31518 4.37703 4.39416 4.46333 4.51433 4.60273 4.65881 4.67014 4.75958 4.78552 4.90375 5.00199 5.10281 5.14719 5.32235 5.44916 5.50037 5.53856 5.57366 5.66849 5.77375 5.94203 6.05788 6.25501 6.58980 6.61341 6.98789 7.30448 7.82521 8.79349 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.019613 B = 0.002132 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.310938 B =13130.929754 C =14410.233134 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.125 3.875 3 C -0.265 4.265 4 C 0.059 3.941 5 C -0.251 4.251 6 C 0.541 3.459 7 O -0.583 6.583 8 N -0.654 5.654 9 C 0.184 3.816 10 C -0.206 4.206 11 C -0.050 4.050 12 C -0.257 4.257 13 C 0.125 3.875 14 O -0.236 6.236 15 C -0.413 4.413 16 H 0.106 0.894 17 C -0.029 4.029 18 N -0.925 5.925 19 Si 1.025 2.975 20 H -0.247 1.247 21 H -0.269 1.269 22 H -0.268 1.268 23 C -0.214 4.214 24 C 0.079 3.921 25 N -0.332 5.332 26 N -0.366 5.366 27 C 0.084 3.916 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.164 0.836 33 H 0.431 0.569 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.123 0.877 37 H 0.272 0.728 38 H 0.101 0.899 39 H 0.213 0.787 40 H 0.091 0.909 41 H 0.115 0.885 42 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.773 -23.017 -6.919 27.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.008 4.008 3 C -0.276 4.276 4 C 0.037 3.963 5 C -0.272 4.272 6 C 0.336 3.664 7 O -0.465 6.465 8 N -0.300 5.300 9 C 0.089 3.911 10 C -0.226 4.226 11 C -0.068 4.068 12 C -0.277 4.277 13 C 0.074 3.926 14 O -0.143 6.143 15 C -0.489 4.489 16 H 0.124 0.876 17 C -0.226 4.226 18 N -0.563 5.563 19 Si 0.844 3.156 20 H -0.170 1.170 21 H -0.194 1.194 22 H -0.193 1.193 23 C -0.236 4.236 24 C -0.107 4.107 25 N -0.152 5.152 26 N -0.145 5.145 27 C -0.055 4.055 28 H 0.119 0.881 29 H 0.119 0.881 30 H 0.106 0.894 31 H 0.137 0.863 32 H 0.181 0.819 33 H 0.271 0.729 34 H 0.181 0.819 35 H 0.177 0.823 36 H 0.141 0.859 37 H 0.081 0.919 38 H 0.119 0.881 39 H 0.230 0.770 40 H 0.109 0.891 41 H 0.134 0.866 42 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 12.315 -24.322 -6.699 28.073 hybrid contribution -0.730 1.375 0.407 1.609 sum 11.585 -22.947 -6.292 26.464 Atomic orbital electron populations 1.20741 0.84468 1.05616 1.05168 1.22200 0.95972 0.86785 0.95821 1.19213 0.93121 0.92402 1.22874 1.21620 0.99204 0.89537 0.85939 1.21526 1.02413 0.89356 1.13902 1.17918 0.85300 0.87619 0.75575 1.90893 1.19099 1.85491 1.51039 1.43213 1.11469 1.02852 1.72437 1.17366 0.93647 0.84671 0.95417 1.20916 1.03453 0.92914 1.05314 1.21036 0.93776 0.96128 0.95855 1.21321 0.99252 1.00211 1.06886 1.19692 0.86554 0.93866 0.92480 1.83960 1.33725 1.27509 1.69063 1.21960 1.12138 0.80928 1.33843 0.87631 1.26730 0.94799 1.06150 0.94911 1.70237 1.15712 1.37769 1.32622 0.84451 0.78973 0.73284 0.78934 1.17015 1.19424 1.19303 1.20223 1.00958 0.93568 1.08806 1.24533 0.98230 0.91641 0.96284 1.77114 0.97465 1.14061 1.26535 1.48683 1.03488 1.07643 1.54712 1.22328 1.02601 0.75450 1.05108 0.88057 0.88081 0.89435 0.86340 0.81862 0.72938 0.81869 0.82269 0.85927 0.91913 0.88108 0.77039 0.89089 0.86622 0.88408 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.00 9.70 71.24 0.69 -0.31 16 2 C 0.12 2.00 7.02 42.18 0.30 2.29 16 3 C -0.26 -5.12 6.08 -20.19 -0.12 -5.24 16 4 C 0.06 1.33 9.33 23.83 0.22 1.55 16 5 C -0.25 -5.66 9.33 22.42 0.21 -5.45 16 6 C 0.54 17.69 7.41 85.12 0.63 18.32 16 7 O -0.58 -26.07 13.54 -4.51 -0.06 -26.13 16 8 N -0.65 -18.95 5.32 -311.47 -1.66 -20.60 16 9 C 0.18 6.98 6.29 38.17 0.24 7.22 16 10 C -0.21 -6.43 9.96 22.43 0.22 -6.21 16 11 C -0.05 -1.69 10.03 22.24 0.22 -1.47 16 12 C -0.26 -11.71 9.17 22.42 0.21 -11.51 16 13 C 0.12 6.87 6.64 22.56 0.15 7.02 16 14 O -0.24 -15.46 9.75 -22.71 -0.22 -15.68 16 15 C -0.41 -25.37 9.49 67.92 0.64 -24.72 16 16 H 0.11 5.87 5.20 -2.91 -0.02 5.86 16 17 C -0.03 -1.75 5.49 84.83 0.47 -1.28 16 18 N -0.92 -59.95 13.67 21.61 0.30 -59.65 16 19 Si 1.02 44.61 29.55 68.60 2.03 46.63 16 20 H -0.25 -9.78 7.11 99.48 0.71 -9.08 16 21 H -0.27 -11.24 7.11 99.48 0.71 -10.54 16 22 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 23 C -0.21 -10.80 8.63 22.51 0.19 -10.60 16 24 C 0.08 1.40 11.39 85.69 0.98 2.38 16 25 N -0.33 -6.54 12.49 -56.17 -0.70 -7.24 16 26 N -0.37 -5.63 3.98 -353.99 -1.41 -7.04 16 27 C 0.08 0.50 11.06 127.77 1.41 1.92 16 28 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.10 0.47 7.72 -2.39 -0.02 0.45 16 30 H 0.09 1.05 7.61 -2.39 -0.02 1.03 16 31 H 0.12 3.06 7.02 -2.91 -0.02 3.04 16 32 H 0.16 2.23 6.93 -2.91 -0.02 2.21 16 33 H 0.43 7.84 8.78 -92.71 -0.81 7.03 16 34 H 0.16 3.44 8.06 -2.91 -0.02 3.42 16 35 H 0.16 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.12 5.58 5.63 -2.91 -0.02 5.56 16 37 H 0.27 16.02 8.31 -92.70 -0.77 15.25 16 38 H 0.10 5.70 6.23 -2.91 -0.02 5.68 16 39 H 0.21 2.33 7.31 -2.91 -0.02 2.30 16 40 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 41 H 0.12 0.08 7.64 -2.39 -0.02 0.06 16 42 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 Total: -1.00 -93.64 365.60 5.20 -88.44 By element: Atomic # 1 Polarization: 27.09 SS G_CDS: 0.26 Total: 27.35 kcal Atomic # 6 Polarization: -32.74 SS G_CDS: 6.66 Total: -26.08 kcal Atomic # 7 Polarization: -91.06 SS G_CDS: -3.47 Total: -94.54 kcal Atomic # 8 Polarization: -41.53 SS G_CDS: -0.28 Total: -41.81 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.63 kcal Total: -93.64 5.20 -88.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492249681.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.452 kcal (2) G-P(sol) polarization free energy of solvation -93.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.444 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds