Wall clock time and date at job start Tue Mar 31 2020 15:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39728 * 125.77795 * 2 1 4 4 C 1.36160 * 107.86095 * 180.02562 * 3 2 1 5 5 N 1.39346 * 126.26515 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00138 * 0.02562 * 5 4 3 7 7 O 1.21739 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.46201 * 119.99813 * 180.02562 * 6 5 4 9 9 C 1.35008 * 120.00202 * 173.21680 * 8 6 5 10 10 C 1.46999 * 119.99256 * 349.02633 * 9 8 6 11 11 C 1.39966 * 120.11644 * 316.07373 * 10 9 8 12 12 C 1.37670 * 119.88623 * 179.72182 * 11 10 9 13 13 C 1.39014 * 120.11016 * 0.55821 * 12 11 10 14 14 O 1.35743 * 119.88605 * 179.73764 * 13 12 11 15 15 C 1.39025 * 120.23007 * 359.72191 * 13 12 11 16 16 C 1.37659 * 120.11528 * 359.97438 * 15 13 12 17 17 N 1.35814 * 107.46873 * 0.02562 * 4 3 2 18 18 C 1.46502 * 126.09443 * 180.02562 * 17 4 3 19 19 C 1.50696 * 109.46875 * 270.01845 * 18 17 4 20 20 H 1.08005 * 120.00324 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99966 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99783 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47060 * 89.99746 * 23 21 19 25 25 H 1.48494 * 109.47330 * 210.00190 * 23 21 19 26 26 H 1.48500 * 109.47062 * 330.00148 * 23 21 19 27 27 N 1.30836 * 125.77916 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46660 * 269.98121 * 1 2 3 29 29 H 1.09002 * 109.47461 * 29.97656 * 1 2 3 30 30 H 1.08997 * 109.47073 * 149.98336 * 1 2 3 31 31 H 1.08002 * 126.07234 * 0.02562 * 3 2 1 32 32 H 0.96994 * 119.99500 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.00562 * 353.20888 * 8 6 5 34 34 H 1.08000 * 120.00514 * 169.02445 * 9 8 6 35 35 H 1.08003 * 120.05833 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.94372 * 180.25175 * 12 11 10 37 37 H 0.96697 * 114.00419 * 269.98032 * 14 13 12 38 38 H 1.08003 * 119.94081 * 179.97438 * 15 13 12 39 39 H 1.08002 * 120.05679 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47010 * 30.02321 * 18 17 4 41 41 H 1.09004 * 109.46825 * 150.02271 * 18 17 4 42 42 H 0.97004 * 120.00174 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6195 0.7147 -0.0006 5 7 4.7494 1.5302 -0.0013 6 6 4.6128 2.8710 -0.0009 7 8 3.5022 3.3697 -0.0004 8 6 5.7984 3.7265 -0.0022 9 6 5.6663 5.0630 -0.1399 10 6 4.3698 5.6372 -0.5279 11 6 3.6199 5.0492 -1.5530 12 6 2.4037 5.5874 -1.9087 13 6 1.9256 6.7199 -1.2594 14 8 0.7283 7.2499 -1.6174 15 6 2.6693 7.3112 -0.2445 16 6 3.8837 6.7772 0.1229 17 7 3.6088 -0.6434 -0.0015 18 6 4.7859 -1.5157 -0.0018 19 6 5.1900 -1.8134 -1.4228 20 1 4.6267 -1.3944 -2.2435 21 6 6.2795 -2.6199 -1.6751 22 7 6.9657 -3.1297 -0.6757 23 14 6.7809 -2.9884 -3.4364 24 1 7.7469 -1.9609 -3.9013 25 1 7.4155 -4.3294 -3.5002 26 1 5.5787 -2.9677 -4.3079 27 7 2.2719 -1.0614 -0.0005 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.9875 2.1599 0.0004 32 1 5.6342 1.1328 -0.0020 33 1 6.7799 3.2894 0.1071 34 1 6.5129 5.7103 0.0349 35 1 3.9923 4.1718 -2.0608 36 1 1.8224 5.1321 -2.6968 37 1 0.7861 7.9158 -2.3161 38 1 2.2936 8.1912 0.2565 39 1 4.4605 7.2371 0.9117 40 1 5.6074 -1.0175 0.5129 41 1 4.5475 -2.4476 0.5110 42 1 7.7319 -3.6974 -0.8531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492583364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:13 Heat of formation + Delta-G solvation = 53.368817 kcal Electronic energy + Delta-G solvation = -26972.035364 eV Core-core repulsion = 23112.974884 eV Total energy + Delta-G solvation = -3859.060480 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.87105 -39.92523 -39.00054 -36.90494 -34.68819 -33.77242 -33.45548 -32.04520 -31.03460 -29.42974 -28.92046 -27.94430 -26.01521 -24.30029 -22.90996 -22.68234 -22.05742 -20.28997 -19.65784 -18.81107 -18.51906 -17.17495 -16.86299 -16.49647 -15.75331 -15.66044 -15.36967 -15.02608 -14.73428 -14.28630 -14.17678 -13.92011 -13.78753 -13.42597 -13.17636 -12.83127 -12.76329 -12.52056 -12.44092 -12.05565 -11.99316 -11.75511 -11.57682 -11.54371 -11.08810 -10.89528 -10.54042 -10.37178 -10.32309 -10.00511 -9.85413 -9.80997 -9.49896 -8.86422 -8.73134 -8.05114 -7.87464 -7.39558 -6.34134 -4.42585 0.54054 1.42062 1.66395 2.64451 2.92720 3.14596 3.22376 3.28023 3.36205 3.67770 3.72588 3.84682 4.12839 4.23822 4.59484 4.71167 4.89151 4.92902 4.99172 5.21128 5.29748 5.38879 5.52136 5.65486 5.75661 5.85504 5.92418 6.03380 6.05283 6.18912 6.22735 6.30160 6.35639 6.42097 6.46199 6.54453 6.71898 6.77281 6.84965 7.05399 7.54560 7.56287 7.59156 7.66384 7.79659 7.94776 8.35549 8.62733 8.72274 9.24992 10.72953 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.003400 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.570863 B = 8232.458527 C = 9249.933773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.049 3.951 3 C -0.291 4.291 4 C 0.300 3.700 5 N -0.633 5.633 6 C 0.541 3.459 7 O -0.503 6.503 8 C -0.203 4.203 9 C -0.021 4.021 10 C -0.082 4.082 11 C -0.019 4.019 12 C -0.153 4.153 13 C 0.114 3.886 14 O -0.501 6.501 15 C -0.161 4.161 16 C -0.083 4.083 17 N -0.347 5.347 18 C 0.258 3.742 19 C -0.540 4.540 20 H 0.064 0.936 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.906 3.094 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 N -0.285 5.285 28 H 0.067 0.933 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.416 0.584 33 H 0.139 0.861 34 H 0.139 0.861 35 H 0.120 0.880 36 H 0.126 0.874 37 H 0.387 0.613 38 H 0.124 0.876 39 H 0.124 0.876 40 H 0.043 0.957 41 H 0.056 0.944 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.640 20.471 0.145 20.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.116 4.116 3 C -0.323 4.323 4 C 0.078 3.922 5 N -0.279 5.279 6 C 0.331 3.669 7 O -0.379 6.379 8 C -0.224 4.224 9 C -0.041 4.041 10 C -0.082 4.082 11 C -0.037 4.037 12 C -0.172 4.172 13 C 0.069 3.931 14 O -0.311 6.311 15 C -0.179 4.179 16 C -0.102 4.102 17 N -0.133 5.133 18 C 0.140 3.860 19 C -0.578 4.578 20 H 0.083 0.917 21 C -0.137 4.137 22 N -0.528 5.528 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.196 1.196 27 N -0.110 5.110 28 H 0.086 0.914 29 H 0.088 0.912 30 H 0.084 0.916 31 H 0.179 0.821 32 H 0.252 0.748 33 H 0.157 0.843 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.242 0.758 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.061 0.939 41 H 0.074 0.926 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.293 18.963 0.632 19.257 hybrid contribution 1.255 0.377 -1.184 1.766 sum -2.038 19.340 -0.552 19.455 Atomic orbital electron populations 1.20015 0.87680 1.02385 1.02003 1.22017 0.96491 0.91090 1.01998 1.21288 0.89036 1.00424 1.21522 1.18040 0.88064 0.83258 1.02861 1.42764 1.08228 1.05669 1.71226 1.18361 0.90290 0.81024 0.77269 1.90842 1.26436 1.72975 1.47668 1.22899 0.98008 0.94133 1.07391 1.22349 0.95923 0.94177 0.91610 1.18895 0.95288 0.96141 0.97874 1.20990 0.92907 0.95485 0.94350 1.21219 0.96544 0.97505 1.01882 1.18612 0.85002 0.93973 0.95471 1.84796 1.26970 1.59712 1.59589 1.21162 0.95214 1.01722 0.99840 1.21003 0.95665 0.94764 0.98726 1.49494 1.06407 1.02135 1.55281 1.19600 0.77874 0.89703 0.98846 1.21348 1.13275 1.31816 0.91374 0.91733 1.24939 0.95716 0.94884 0.98175 1.69917 1.19178 1.32625 1.31075 0.86353 0.78811 0.77859 0.83690 1.20328 1.20785 1.19617 1.77327 0.86221 1.21868 1.25598 0.91434 0.91180 0.91551 0.82058 0.74754 0.84288 0.84298 0.86245 0.85633 0.75780 0.85778 0.85778 0.93877 0.92614 0.92169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.96 10.44 36.00 0.38 -0.59 16 2 C 0.05 1.01 7.20 -82.46 -0.59 0.41 16 3 C -0.29 -6.04 9.58 -39.77 -0.38 -6.42 16 4 C 0.30 6.35 7.68 -152.77 -1.17 5.18 16 5 N -0.63 -11.00 5.41 -12.67 -0.07 -11.07 16 6 C 0.54 8.35 6.75 -13.06 -0.09 8.26 16 7 O -0.50 -8.77 9.28 5.15 0.05 -8.72 16 8 C -0.20 -2.25 9.91 -37.53 -0.37 -2.62 16 9 C -0.02 -0.20 9.80 -37.18 -0.36 -0.57 16 10 C -0.08 -0.96 4.53 -105.05 -0.48 -1.44 16 11 C -0.02 -0.25 6.59 -39.14 -0.26 -0.51 16 12 C -0.15 -1.96 9.97 -39.50 -0.39 -2.35 16 13 C 0.11 1.35 6.71 -39.00 -0.26 1.09 16 14 O -0.50 -5.27 13.49 -18.94 -0.26 -5.52 16 15 C -0.16 -1.75 9.97 -39.50 -0.39 -2.14 16 16 C -0.08 -0.88 9.79 -39.14 -0.38 -1.26 16 17 N -0.35 -8.22 3.62 -61.45 -0.22 -8.44 16 18 C 0.26 6.47 6.02 -5.19 -0.03 6.44 16 19 C -0.54 -14.52 9.39 -34.44 -0.32 -14.84 16 20 H 0.06 1.81 7.81 -52.48 -0.41 1.40 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -24.31 13.29 55.43 0.74 -23.58 16 23 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 24 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 26 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 27 N -0.28 -6.75 12.56 33.64 0.42 -6.33 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.16 3.29 5.82 -52.49 -0.31 2.98 16 32 H 0.42 6.68 7.97 -40.82 -0.33 6.35 16 33 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 34 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 35 H 0.12 1.66 7.03 -52.48 -0.37 1.29 16 36 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 37 H 0.39 1.99 9.06 45.56 0.41 2.40 16 38 H 0.12 1.11 8.06 -52.48 -0.42 0.68 16 39 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 40 H 0.04 1.05 7.52 -51.93 -0.39 0.65 16 41 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 LS Contribution 364.67 15.07 5.50 5.50 Total: -1.00 -33.50 364.67 -8.41 -41.91 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -4.33 Total: 10.33 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: -5.21 Total: -9.69 kcal Atomic # 7 Polarization: -50.28 SS G_CDS: 0.87 Total: -49.42 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.21 Total: -14.24 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.50 -8.41 -41.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492583364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.282 kcal (2) G-P(sol) polarization free energy of solvation -33.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds