Wall clock time and date at job start Tue Mar 31 2020 15:05:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.39728 * 125.77795 * 2 1 4 4 C 1.36160 * 107.86095 * 180.02562 * 3 2 1 5 5 N 1.39346 * 126.26515 * 179.97438 * 4 3 2 6 6 C 1.34776 * 120.00138 * 0.02562 * 5 4 3 7 7 O 1.21739 * 119.99761 * 359.97438 * 6 5 4 8 8 C 1.46201 * 119.99813 * 180.02562 * 6 5 4 9 9 C 1.35008 * 120.00202 * 173.21680 * 8 6 5 10 10 C 1.46999 * 119.99256 * 349.02633 * 9 8 6 11 11 C 1.39966 * 120.11644 * 316.07373 * 10 9 8 12 12 C 1.37670 * 119.88623 * 179.72182 * 11 10 9 13 13 C 1.39014 * 120.11016 * 0.55821 * 12 11 10 14 14 O 1.35743 * 119.88605 * 179.73764 * 13 12 11 15 15 C 1.39025 * 120.23007 * 359.72191 * 13 12 11 16 16 C 1.37659 * 120.11528 * 359.97438 * 15 13 12 17 17 N 1.35814 * 107.46873 * 0.02562 * 4 3 2 18 18 C 1.46502 * 126.09443 * 180.02562 * 17 4 3 19 19 C 1.50696 * 109.46875 * 270.01845 * 18 17 4 20 20 H 1.08005 * 120.00324 * 0.02562 * 19 18 17 21 21 C 1.37880 * 119.99966 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99783 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00150 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47060 * 89.99746 * 23 21 19 25 25 H 1.48494 * 109.47330 * 210.00190 * 23 21 19 26 26 H 1.48500 * 109.47062 * 330.00148 * 23 21 19 27 27 N 1.30836 * 125.77916 * 180.02562 * 2 1 3 28 28 H 1.09001 * 109.46660 * 269.98121 * 1 2 3 29 29 H 1.09002 * 109.47461 * 29.97656 * 1 2 3 30 30 H 1.08997 * 109.47073 * 149.98336 * 1 2 3 31 31 H 1.08002 * 126.07234 * 0.02562 * 3 2 1 32 32 H 0.96994 * 119.99500 * 180.02562 * 5 4 3 33 33 H 1.08001 * 120.00562 * 353.20888 * 8 6 5 34 34 H 1.08000 * 120.00514 * 169.02445 * 9 8 6 35 35 H 1.08003 * 120.05833 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.94372 * 180.25175 * 12 11 10 37 37 H 0.96697 * 114.00419 * 269.98032 * 14 13 12 38 38 H 1.08003 * 119.94081 * 179.97438 * 15 13 12 39 39 H 1.08002 * 120.05679 * 180.02562 * 16 15 13 40 40 H 1.09000 * 109.47010 * 30.02321 * 18 17 4 41 41 H 1.09004 * 109.46825 * 150.02271 * 18 17 4 42 42 H 0.97004 * 120.00174 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6195 0.7147 -0.0006 5 7 4.7494 1.5302 -0.0013 6 6 4.6128 2.8710 -0.0009 7 8 3.5022 3.3697 -0.0004 8 6 5.7984 3.7265 -0.0022 9 6 5.6663 5.0630 -0.1399 10 6 4.3698 5.6372 -0.5279 11 6 3.6199 5.0492 -1.5530 12 6 2.4037 5.5874 -1.9087 13 6 1.9256 6.7199 -1.2594 14 8 0.7283 7.2499 -1.6174 15 6 2.6693 7.3112 -0.2445 16 6 3.8837 6.7772 0.1229 17 7 3.6088 -0.6434 -0.0015 18 6 4.7859 -1.5157 -0.0018 19 6 5.1900 -1.8134 -1.4228 20 1 4.6267 -1.3944 -2.2435 21 6 6.2795 -2.6199 -1.6751 22 7 6.9657 -3.1297 -0.6757 23 14 6.7809 -2.9884 -3.4364 24 1 7.7469 -1.9609 -3.9013 25 1 7.4155 -4.3294 -3.5002 26 1 5.5787 -2.9677 -4.3079 27 7 2.2719 -1.0614 -0.0005 28 1 -0.3633 -0.0003 1.0277 29 1 -0.3634 0.8902 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 1.9875 2.1599 0.0004 32 1 5.6342 1.1328 -0.0020 33 1 6.7799 3.2894 0.1071 34 1 6.5129 5.7103 0.0349 35 1 3.9923 4.1718 -2.0608 36 1 1.8224 5.1321 -2.6968 37 1 0.7861 7.9158 -2.3161 38 1 2.2936 8.1912 0.2565 39 1 4.4605 7.2371 0.9117 40 1 5.6074 -1.0175 0.5129 41 1 4.5475 -2.4476 0.5110 42 1 7.7319 -3.6974 -0.8531 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492583364.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:12 Heat of formation + Delta-G solvation = 31.354745 kcal Electronic energy + Delta-G solvation = -26972.989966 eV Core-core repulsion = 23112.974884 eV Total energy + Delta-G solvation = -3860.015082 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.38687 -41.04219 -40.09607 -37.79242 -36.20363 -35.56693 -34.36377 -33.82365 -31.91031 -30.90237 -30.27908 -29.25826 -27.81107 -25.42130 -24.64910 -23.66267 -23.12055 -21.61987 -21.17660 -20.02817 -19.35508 -18.88596 -18.36743 -18.06178 -16.88737 -16.75826 -16.47344 -16.33206 -16.27879 -15.71814 -15.53655 -15.12295 -14.70512 -14.56433 -14.44964 -14.30393 -14.09140 -14.02297 -13.59949 -13.41985 -13.28867 -13.14380 -12.91982 -12.86748 -12.70227 -12.41223 -12.31536 -11.90419 -11.68037 -11.44440 -11.36076 -10.92992 -10.77075 -10.69726 -9.80271 -9.59957 -9.03553 -8.93735 -8.37634 -6.55322 -0.35459 0.51407 0.72090 1.13996 1.34784 1.37474 1.43274 1.50128 1.89165 2.24838 2.36027 2.39603 2.83277 2.92550 3.34729 3.66619 3.82255 3.84261 4.00752 4.08382 4.24479 4.42796 4.51691 4.61951 4.65956 4.72575 4.82425 4.86060 4.91400 4.93937 4.97632 5.03821 5.12200 5.17621 5.21370 5.30055 5.47820 5.49796 5.53550 5.67945 5.75785 5.96025 5.96506 6.18248 6.35205 6.56941 6.90366 7.01208 7.08484 7.17177 8.68858 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012993 B = 0.003400 C = 0.003026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.570863 B = 8232.458527 C = 9249.933773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.055 3.945 3 C -0.304 4.304 4 C 0.302 3.698 5 N -0.636 5.636 6 C 0.537 3.463 7 O -0.525 6.525 8 C -0.221 4.221 9 C 0.006 3.994 10 C -0.100 4.100 11 C -0.035 4.035 12 C -0.174 4.174 13 C 0.109 3.891 14 O -0.512 6.512 15 C -0.165 4.165 16 C -0.079 4.079 17 N -0.370 5.370 18 C 0.274 3.726 19 C -0.556 4.556 20 H 0.046 0.954 21 C 0.028 3.972 22 N -0.914 5.914 23 Si 0.969 3.031 24 H -0.261 1.261 25 H -0.274 1.274 26 H -0.280 1.280 27 N -0.332 5.332 28 H 0.088 0.912 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.166 0.834 32 H 0.420 0.580 33 H 0.168 0.832 34 H 0.187 0.813 35 H 0.101 0.899 36 H 0.120 0.880 37 H 0.409 0.591 38 H 0.146 0.854 39 H 0.157 0.843 40 H 0.048 0.952 41 H 0.025 0.975 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.721 22.903 0.148 22.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.110 4.110 3 C -0.336 4.336 4 C 0.080 3.920 5 N -0.283 5.283 6 C 0.329 3.671 7 O -0.402 6.402 8 C -0.241 4.241 9 C -0.013 4.013 10 C -0.100 4.100 11 C -0.054 4.054 12 C -0.193 4.193 13 C 0.064 3.936 14 O -0.326 6.326 15 C -0.184 4.184 16 C -0.097 4.097 17 N -0.157 5.157 18 C 0.155 3.845 19 C -0.594 4.594 20 H 0.064 0.936 21 C -0.174 4.174 22 N -0.552 5.552 23 Si 0.793 3.207 24 H -0.186 1.186 25 H -0.199 1.199 26 H -0.205 1.205 27 N -0.157 5.157 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.091 0.909 31 H 0.183 0.817 32 H 0.257 0.743 33 H 0.186 0.814 34 H 0.204 0.796 35 H 0.119 0.881 36 H 0.138 0.862 37 H 0.268 0.732 38 H 0.164 0.836 39 H 0.174 0.826 40 H 0.066 0.934 41 H 0.043 0.957 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.362 21.435 0.630 21.574 hybrid contribution 0.852 -0.202 -1.182 1.471 sum -1.510 21.233 -0.552 21.294 Atomic orbital electron populations 1.20201 0.84174 1.03713 1.03756 1.22849 0.98650 0.90209 0.99270 1.21438 0.89088 1.00588 1.22456 1.18434 0.89674 0.82691 1.01249 1.43018 1.07330 1.06167 1.71783 1.19245 0.91597 0.80361 0.75856 1.90824 1.27866 1.73017 1.48537 1.22947 0.97228 0.93995 1.09969 1.22819 0.96187 0.93964 0.88294 1.19200 0.96283 0.96760 0.97746 1.20949 0.93520 0.95385 0.95497 1.21311 0.96898 0.98507 1.02603 1.18735 0.85324 0.93789 0.95712 1.84728 1.26570 1.60576 1.60681 1.21475 0.95279 1.02293 0.99325 1.21385 0.95654 0.93911 0.98711 1.49309 1.06149 1.02894 1.57307 1.19196 0.78644 0.88871 0.97762 1.21397 1.13754 1.32683 0.91584 0.93614 1.25686 0.95344 0.94246 1.02115 1.69990 1.19485 1.32763 1.32919 0.85384 0.78289 0.78340 0.78655 1.18566 1.19876 1.20506 1.77269 0.86566 1.23638 1.28220 0.89332 0.89145 0.90873 0.81673 0.74267 0.81407 0.79625 0.88100 0.86223 0.73178 0.83637 0.82565 0.93433 0.95681 0.91593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.80 10.44 71.24 0.74 -1.06 16 2 C 0.06 2.32 7.20 43.07 0.31 2.63 16 3 C -0.30 -12.89 9.58 22.15 0.21 -12.68 16 4 C 0.30 13.20 7.68 131.20 1.01 14.20 16 5 N -0.64 -22.53 5.41 -312.19 -1.69 -24.22 16 6 C 0.54 16.45 6.75 86.31 0.58 17.03 16 7 O -0.53 -18.37 9.28 -4.47 -0.04 -18.42 16 8 C -0.22 -4.43 9.91 23.60 0.23 -4.20 16 9 C 0.01 0.10 9.80 23.82 0.23 0.34 16 10 C -0.10 -2.14 4.53 -20.14 -0.09 -2.23 16 11 C -0.04 -0.92 6.59 22.55 0.15 -0.78 16 12 C -0.17 -4.53 9.97 22.32 0.22 -4.30 16 13 C 0.11 2.49 6.71 22.64 0.15 2.64 16 14 O -0.51 -10.18 13.49 -90.67 -1.22 -11.40 16 15 C -0.17 -3.20 9.97 22.32 0.22 -2.98 16 16 C -0.08 -1.42 9.79 22.55 0.22 -1.20 16 17 N -0.37 -18.29 3.62 -348.33 -1.26 -19.55 16 18 C 0.27 14.40 6.02 85.63 0.52 14.91 16 19 C -0.56 -30.83 9.39 25.60 0.24 -30.59 16 20 H 0.05 2.66 7.81 -2.91 -0.02 2.64 16 21 C 0.03 1.49 5.46 84.66 0.46 1.95 16 22 N -0.91 -50.26 13.29 21.45 0.28 -49.97 16 23 Si 0.97 42.29 29.54 68.60 2.03 44.31 16 24 H -0.26 -10.65 7.11 99.48 0.71 -9.95 16 25 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 N -0.33 -16.30 12.56 -47.47 -0.60 -16.89 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 31 H 0.17 6.85 5.82 -2.91 -0.02 6.84 16 32 H 0.42 13.77 7.97 -92.71 -0.74 13.03 16 33 H 0.17 2.35 8.06 -2.91 -0.02 2.33 16 34 H 0.19 1.26 8.06 -2.91 -0.02 1.23 16 35 H 0.10 2.93 7.03 -2.91 -0.02 2.91 16 36 H 0.12 3.06 8.06 -2.91 -0.02 3.03 16 37 H 0.41 3.64 9.06 -74.06 -0.67 2.97 16 38 H 0.15 2.13 8.06 -2.91 -0.02 2.11 16 39 H 0.16 1.76 8.06 -2.91 -0.02 1.74 16 40 H 0.05 2.40 7.52 -2.39 -0.02 2.38 16 41 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.27 14.09 8.31 -92.71 -0.77 13.32 16 Total: -1.00 -74.95 364.67 2.58 -72.37 By element: Atomic # 1 Polarization: 30.42 SS G_CDS: -0.33 Total: 30.08 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: 5.42 Total: -6.31 kcal Atomic # 7 Polarization: -107.38 SS G_CDS: -3.26 Total: -110.64 kcal Atomic # 8 Polarization: -28.56 SS G_CDS: -1.26 Total: -29.82 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.31 kcal Total: -74.95 2.58 -72.37 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492583364.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.723 kcal (2) G-P(sol) polarization free energy of solvation -74.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds