Wall clock time and date at job start Tue Mar 31 2020 14:53:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34990 * 125.52623 * 2 1 4 4 C 1.41198 * 108.24377 * 179.97438 * 3 2 1 5 5 N 1.32882 * 126.37936 * 179.97438 * 4 3 2 6 6 C 1.34090 * 120.00331 * 0.03142 * 5 4 3 7 7 O 1.22019 * 119.99820 * 359.97438 * 6 5 4 8 8 C 1.46719 * 120.00051 * 179.97438 * 6 5 4 9 9 C 1.34780 * 119.99682 * 179.97438 * 8 6 5 10 10 C 1.47083 * 119.99820 * 180.02562 * 9 8 6 11 11 C 1.39937 * 120.11097 * 180.02562 * 10 9 8 12 12 C 1.37686 * 119.88423 * 179.97438 * 11 10 9 13 13 C 1.38997 * 120.11156 * 0.28087 * 12 11 10 14 14 O 1.35763 * 119.88845 * 179.71916 * 13 12 11 15 15 C 1.39000 * 120.22447 * 359.44082 * 13 12 11 16 16 C 1.37684 * 120.11345 * 0.55454 * 15 13 12 17 17 N 1.37499 * 107.23252 * 0.26640 * 4 3 2 18 18 H 0.97005 * 126.36499 * 179.73848 * 17 4 3 19 19 N 1.36455 * 125.51462 * 179.97438 * 2 1 3 20 20 C 1.46499 * 125.85176 * 0.07007 * 19 2 1 21 21 C 1.50694 * 109.47295 * 85.00068 * 20 19 2 22 22 H 1.08001 * 120.00330 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00174 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00519 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99864 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46966 * 90.00180 * 25 23 21 27 27 H 1.48500 * 109.47155 * 210.00062 * 25 23 21 28 28 H 1.48499 * 109.47019 * 330.00310 * 25 23 21 29 29 H 1.08999 * 109.47447 * 90.02031 * 1 2 3 30 30 H 1.08998 * 109.47167 * 210.02503 * 1 2 3 31 31 H 1.09009 * 109.46504 * 330.01919 * 1 2 3 32 32 H 1.08001 * 125.87291 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.99643 * 359.97438 * 8 6 5 34 34 H 1.07998 * 120.00675 * 0.02562 * 9 8 6 35 35 H 1.08000 * 120.05785 * 359.95522 * 11 10 9 36 36 H 1.08002 * 119.93961 * 179.97438 * 12 11 10 37 37 H 0.96702 * 113.99775 * 89.99436 * 14 13 12 38 38 H 1.08003 * 119.94485 * 180.25927 * 15 13 12 39 39 H 1.08002 * 120.06233 * 179.74248 * 16 15 13 40 40 H 1.08999 * 109.46948 * 205.00478 * 20 19 2 41 41 H 1.09002 * 109.47011 * 324.99545 * 20 19 2 42 42 H 0.96998 * 120.00613 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2914 1.0986 0.0000 4 6 3.6397 0.6791 0.0006 5 7 4.7101 1.4665 0.0003 6 6 4.5621 2.7993 0.0000 7 8 3.4445 3.2890 -0.0005 8 6 5.7440 3.6686 0.0002 9 6 5.5952 5.0081 -0.0006 10 6 6.7800 5.8797 -0.0009 11 6 6.6283 7.2708 -0.0013 12 6 7.7406 8.0822 -0.0010 13 6 9.0126 7.5218 -0.0064 14 8 10.1063 8.3262 -0.0119 15 6 9.1687 6.1406 -0.0002 16 6 8.0628 5.3204 -0.0004 17 7 3.6385 -0.6958 -0.0051 18 1 4.4191 -1.2717 -0.0098 19 7 2.2997 -1.1107 0.0005 20 6 1.8316 -2.4989 -0.0003 21 6 1.5552 -2.9350 -1.4161 22 1 1.7120 -2.2468 -2.2335 23 6 1.1010 -4.2122 -1.6678 24 7 0.8593 -4.5927 -2.9032 25 14 0.8290 -5.4024 -0.2538 26 1 -0.5646 -5.2717 0.2420 27 1 1.0585 -6.7918 -0.7252 28 1 1.7769 -5.0897 0.8457 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5136 32 1 1.9469 2.1222 -0.0004 33 1 6.7332 3.2350 0.0011 34 1 4.6061 5.4417 -0.0010 35 1 5.6404 7.7072 -0.0020 36 1 7.6245 9.1560 -0.0017 37 1 10.4270 8.5599 0.8699 38 1 10.1592 5.7100 -0.0002 39 1 8.1851 4.2473 0.0002 40 1 2.5976 -3.1408 0.4346 41 1 0.9173 -2.5744 0.5883 42 1 0.5394 -5.4911 -3.0803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492594197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:08 Heat of formation + Delta-G solvation = 64.459426 kcal Electronic energy + Delta-G solvation = -25246.618541 eV Core-core repulsion = 21388.038986 eV Total energy + Delta-G solvation = -3858.579555 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.02656 -39.92125 -38.56868 -37.17467 -34.52063 -33.33221 -33.10958 -32.33998 -31.29854 -31.06502 -28.97577 -27.63331 -27.20061 -24.38429 -23.13357 -22.67479 -21.92829 -20.36579 -19.72933 -18.79549 -18.46814 -17.48724 -17.19722 -16.51626 -15.91366 -15.69850 -15.26536 -15.16100 -14.95744 -14.57528 -14.25266 -13.93915 -13.68535 -13.65907 -13.07958 -13.05469 -12.82906 -12.79415 -12.63699 -12.50966 -12.35773 -11.99821 -11.93222 -11.59167 -11.49184 -11.06727 -10.72652 -10.65242 -10.12924 -10.06167 -9.59047 -9.51172 -9.26658 -9.08365 -8.97213 -8.47964 -8.14352 -6.98273 -6.55156 -4.63939 0.45626 1.14306 1.47929 1.88804 2.19650 2.92679 2.97312 3.04168 3.05788 3.56918 3.93715 3.95144 4.04549 4.53624 4.58436 4.61849 4.70495 4.72796 4.89437 5.09197 5.11112 5.30198 5.38479 5.41609 5.58577 5.63177 5.74090 5.78677 5.96237 6.02526 6.03348 6.10841 6.11700 6.17336 6.18885 6.30050 6.53431 6.61901 6.69411 6.74238 6.88964 7.33557 7.35316 7.52021 7.78628 7.99201 8.20357 8.48161 8.96955 9.24793 10.56263 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031946 B = 0.001823 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.256628 B =15356.328214 C =15823.115398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.193 3.807 3 C -0.330 4.330 4 C 0.474 3.526 5 N -0.692 5.692 6 C 0.517 3.483 7 O -0.582 6.582 8 C -0.138 4.138 9 C -0.074 4.074 10 C -0.062 4.062 11 C -0.089 4.089 12 C -0.146 4.146 13 C 0.100 3.900 14 O -0.501 6.501 15 C -0.144 4.144 16 C -0.093 4.093 17 N -0.466 5.466 18 H 0.446 0.554 19 N -0.338 5.338 20 C 0.227 3.773 21 C -0.563 4.563 22 H 0.085 0.915 23 C 0.085 3.915 24 N -0.875 5.875 25 Si 0.872 3.128 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.265 1.265 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.126 0.874 34 H 0.133 0.867 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.389 0.611 38 H 0.129 0.871 39 H 0.135 0.865 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.874 15.997 9.468 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 C -0.362 4.362 4 C 0.224 3.776 5 N -0.455 5.455 6 C 0.305 3.695 7 O -0.466 6.466 8 C -0.159 4.159 9 C -0.094 4.094 10 C -0.062 4.062 11 C -0.107 4.107 12 C -0.165 4.165 13 C 0.056 3.944 14 O -0.311 6.311 15 C -0.163 4.163 16 C -0.111 4.111 17 N -0.188 5.188 18 H 0.294 0.706 19 N -0.125 5.125 20 C 0.110 3.890 21 C -0.601 4.601 22 H 0.103 0.897 23 C -0.122 4.122 24 N -0.510 5.510 25 Si 0.698 3.302 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.190 1.190 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.202 0.798 33 H 0.143 0.857 34 H 0.151 0.849 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.245 0.755 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.992 15.372 8.727 19.832 hybrid contribution -0.082 -0.906 0.920 1.294 sum 8.911 14.466 9.647 19.537 Atomic orbital electron populations 1.20629 0.86179 1.03791 1.04658 1.21354 0.94528 0.85386 0.92006 1.22295 0.91167 1.00350 1.22390 1.19145 0.91702 0.82062 0.84696 1.68963 1.28031 1.05118 1.43430 1.19027 0.87718 0.86186 0.76527 1.90640 1.27086 1.79253 1.49579 1.22907 0.99015 0.93249 1.00681 1.22178 0.97110 0.93195 0.96890 1.19161 0.93109 0.93260 1.00646 1.21249 0.98778 0.92350 0.98313 1.21335 0.91797 1.00504 1.02829 1.18637 0.86123 0.88994 1.00681 1.84795 1.44404 1.68343 1.33547 1.21358 0.99601 0.92748 1.02551 1.21385 0.91247 1.00403 0.98079 1.44490 0.98557 1.05243 1.70539 0.70637 1.47405 0.93035 1.07525 1.64503 1.20329 0.95973 0.72469 1.00274 1.21202 1.48318 0.99965 0.90610 0.89668 1.24810 0.93997 0.97508 0.95865 1.69849 1.42556 1.19666 1.18919 0.86923 0.79581 0.81408 0.82298 1.19295 1.20217 1.18982 0.88719 0.90302 0.89358 0.79803 0.85670 0.84940 0.85065 0.85333 0.75544 0.85269 0.84755 0.93330 0.92278 0.91674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 10.09 36.01 0.36 -0.90 16 2 C 0.19 3.33 6.93 -81.69 -0.57 2.77 16 3 C -0.33 -6.22 9.41 -39.61 -0.37 -6.59 16 4 C 0.47 9.22 8.07 -155.26 -1.25 7.96 16 5 N -0.69 -13.68 10.53 -12.48 -0.13 -13.81 16 6 C 0.52 9.99 7.67 -13.14 -0.10 9.89 16 7 O -0.58 -12.22 13.17 4.90 0.06 -12.16 16 8 C -0.14 -2.11 9.51 -37.38 -0.36 -2.46 16 9 C -0.07 -0.99 9.45 -37.22 -0.35 -1.35 16 10 C -0.06 -0.71 5.87 -105.04 -0.62 -1.33 16 11 C -0.09 -0.89 9.79 -39.15 -0.38 -1.27 16 12 C -0.15 -1.35 9.97 -39.50 -0.39 -1.75 16 13 C 0.10 0.96 6.71 -39.02 -0.26 0.70 16 14 O -0.50 -4.14 13.49 -19.00 -0.26 -4.40 16 15 C -0.14 -1.39 9.97 -39.50 -0.39 -1.78 16 16 C -0.09 -0.99 9.40 -39.15 -0.37 -1.36 16 17 N -0.47 -8.28 7.38 31.34 0.23 -8.05 16 18 H 0.45 6.84 8.96 -182.55 -1.64 5.20 16 19 N -0.34 -6.21 3.63 -58.03 -0.21 -6.42 16 20 C 0.23 4.37 5.00 -5.20 -0.03 4.34 16 21 C -0.56 -13.48 9.94 -34.45 -0.34 -13.82 16 22 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 23 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 24 N -0.87 -23.60 13.96 55.43 0.77 -22.83 16 25 Si 0.87 17.65 27.47 -169.99 -4.67 12.98 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 27 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 28 H -0.27 -5.00 6.54 56.52 0.37 -4.64 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 0.99 7.14 -51.93 -0.37 0.62 16 31 H 0.09 0.95 8.14 -51.92 -0.42 0.53 16 32 H 0.19 3.58 5.77 -52.49 -0.30 3.28 16 33 H 0.13 1.68 6.06 -52.49 -0.32 1.36 16 34 H 0.13 1.82 7.52 -52.49 -0.39 1.43 16 35 H 0.13 1.08 8.06 -52.49 -0.42 0.65 16 36 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.39 1.29 9.06 45.56 0.41 1.70 16 38 H 0.13 1.02 8.06 -52.48 -0.42 0.60 16 39 H 0.13 1.29 6.16 -52.49 -0.32 0.97 16 40 H 0.05 0.90 7.20 -51.93 -0.37 0.53 16 41 H 0.06 1.04 6.60 -51.93 -0.34 0.70 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 364.93 15.07 5.50 5.50 Total: -1.00 -32.02 364.93 -9.57 -41.60 By element: Atomic # 1 Polarization: 17.89 SS G_CDS: -5.35 Total: 12.54 kcal Atomic # 6 Polarization: 0.57 SS G_CDS: -5.52 Total: -4.95 kcal Atomic # 7 Polarization: -51.76 SS G_CDS: 0.66 Total: -51.10 kcal Atomic # 8 Polarization: -16.36 SS G_CDS: -0.19 Total: -16.55 kcal Atomic # 14 Polarization: 17.65 SS G_CDS: -4.67 Total: 12.98 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.02 -9.57 -41.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492594197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.056 kcal (2) G-P(sol) polarization free energy of solvation -32.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds