Wall clock time and date at job start Tue Mar 31 2020 14:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.34990 * 125.52623 * 2 1 4 4 C 1.41198 * 108.24377 * 179.97438 * 3 2 1 5 5 N 1.32882 * 126.37936 * 179.97438 * 4 3 2 6 6 C 1.34090 * 120.00331 * 0.03142 * 5 4 3 7 7 O 1.22019 * 119.99820 * 359.97438 * 6 5 4 8 8 C 1.46719 * 120.00051 * 179.97438 * 6 5 4 9 9 C 1.34780 * 119.99682 * 179.97438 * 8 6 5 10 10 C 1.47083 * 119.99820 * 180.02562 * 9 8 6 11 11 C 1.39937 * 120.11097 * 180.02562 * 10 9 8 12 12 C 1.37686 * 119.88423 * 179.97438 * 11 10 9 13 13 C 1.38997 * 120.11156 * 0.28087 * 12 11 10 14 14 O 1.35763 * 119.88845 * 179.71916 * 13 12 11 15 15 C 1.39000 * 120.22447 * 359.44082 * 13 12 11 16 16 C 1.37684 * 120.11345 * 0.55454 * 15 13 12 17 17 N 1.37499 * 107.23252 * 0.26640 * 4 3 2 18 18 H 0.97005 * 126.36499 * 179.73848 * 17 4 3 19 19 N 1.36455 * 125.51462 * 179.97438 * 2 1 3 20 20 C 1.46499 * 125.85176 * 0.07007 * 19 2 1 21 21 C 1.50694 * 109.47295 * 85.00068 * 20 19 2 22 22 H 1.08001 * 120.00330 * 359.97438 * 21 20 19 23 23 C 1.37871 * 120.00174 * 180.02562 * 21 20 19 24 24 N 1.31512 * 120.00519 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99864 * 359.97438 * 23 21 20 26 26 H 1.48500 * 109.46966 * 90.00180 * 25 23 21 27 27 H 1.48500 * 109.47155 * 210.00062 * 25 23 21 28 28 H 1.48499 * 109.47019 * 330.00310 * 25 23 21 29 29 H 1.08999 * 109.47447 * 90.02031 * 1 2 3 30 30 H 1.08998 * 109.47167 * 210.02503 * 1 2 3 31 31 H 1.09009 * 109.46504 * 330.01919 * 1 2 3 32 32 H 1.08001 * 125.87291 * 359.97438 * 3 2 1 33 33 H 1.07998 * 119.99643 * 359.97438 * 8 6 5 34 34 H 1.07998 * 120.00675 * 0.02562 * 9 8 6 35 35 H 1.08000 * 120.05785 * 359.95522 * 11 10 9 36 36 H 1.08002 * 119.93961 * 179.97438 * 12 11 10 37 37 H 0.96702 * 113.99775 * 89.99436 * 14 13 12 38 38 H 1.08003 * 119.94485 * 180.25927 * 15 13 12 39 39 H 1.08002 * 120.06233 * 179.74248 * 16 15 13 40 40 H 1.08999 * 109.46948 * 205.00478 * 20 19 2 41 41 H 1.09002 * 109.47011 * 324.99545 * 20 19 2 42 42 H 0.96998 * 120.00613 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2914 1.0986 0.0000 4 6 3.6397 0.6791 0.0006 5 7 4.7101 1.4665 0.0003 6 6 4.5621 2.7993 0.0000 7 8 3.4445 3.2890 -0.0005 8 6 5.7440 3.6686 0.0002 9 6 5.5952 5.0081 -0.0006 10 6 6.7800 5.8797 -0.0009 11 6 6.6283 7.2708 -0.0013 12 6 7.7406 8.0822 -0.0010 13 6 9.0126 7.5218 -0.0064 14 8 10.1063 8.3262 -0.0119 15 6 9.1687 6.1406 -0.0002 16 6 8.0628 5.3204 -0.0004 17 7 3.6385 -0.6958 -0.0051 18 1 4.4191 -1.2717 -0.0098 19 7 2.2997 -1.1107 0.0005 20 6 1.8316 -2.4989 -0.0003 21 6 1.5552 -2.9350 -1.4161 22 1 1.7120 -2.2468 -2.2335 23 6 1.1010 -4.2122 -1.6678 24 7 0.8593 -4.5927 -2.9032 25 14 0.8290 -5.4024 -0.2538 26 1 -0.5646 -5.2717 0.2420 27 1 1.0585 -6.7918 -0.7252 28 1 1.7769 -5.0897 0.8457 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3633 -0.8897 0.5142 31 1 -0.3633 0.8903 0.5136 32 1 1.9469 2.1222 -0.0004 33 1 6.7332 3.2350 0.0011 34 1 4.6061 5.4417 -0.0010 35 1 5.6404 7.7072 -0.0020 36 1 7.6245 9.1560 -0.0017 37 1 10.4270 8.5599 0.8699 38 1 10.1592 5.7100 -0.0002 39 1 8.1851 4.2473 0.0002 40 1 2.5976 -3.1408 0.4346 41 1 0.9173 -2.5744 0.5883 42 1 0.5394 -5.4911 -3.0803 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492594197.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:07 Heat of formation + Delta-G solvation = 42.254072 kcal Electronic energy + Delta-G solvation = -25247.581437 eV Core-core repulsion = 21388.038986 eV Total energy + Delta-G solvation = -3859.542451 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.46297 -40.69667 -39.95425 -37.93957 -36.06680 -34.83205 -34.31320 -33.74073 -32.66984 -32.04551 -29.99345 -28.88638 -28.73782 -25.59060 -24.32708 -23.81029 -23.10642 -21.58298 -21.08224 -19.82864 -19.35999 -19.30136 -18.60887 -17.72159 -16.98638 -16.71647 -16.65007 -16.40687 -16.01469 -15.87317 -15.58479 -15.15247 -14.87621 -14.69390 -14.41730 -14.38531 -14.23712 -13.92036 -13.78288 -13.63027 -13.38888 -13.29214 -13.01230 -12.76559 -12.60055 -12.50749 -12.26319 -11.86178 -11.35858 -11.19066 -11.06749 -10.95271 -10.91933 -10.37888 -10.01148 -9.98919 -9.08945 -8.47364 -8.41298 -6.57416 -0.53488 0.16858 0.39894 0.48915 1.07622 1.37724 1.39303 1.47761 1.70989 2.24523 2.63977 2.75209 2.91327 3.15847 3.29140 3.41431 3.62058 3.82268 4.01321 4.06070 4.17584 4.21129 4.33542 4.38101 4.40807 4.50311 4.70372 4.76478 4.81725 4.87192 4.89537 5.01196 5.05118 5.12795 5.16754 5.26515 5.29086 5.42416 5.56751 5.70393 5.83579 5.87821 5.99826 6.11199 6.44942 6.53209 6.76115 6.86013 7.08576 7.78108 8.72886 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.031946 B = 0.001823 C = 0.001769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.256628 B =15356.328214 C =15823.115398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.201 3.799 3 C -0.347 4.347 4 C 0.456 3.544 5 N -0.704 5.704 6 C 0.505 3.495 7 O -0.611 6.611 8 C -0.170 4.170 9 C -0.041 4.041 10 C -0.090 4.090 11 C -0.085 4.085 12 C -0.152 4.152 13 C 0.109 3.891 14 O -0.509 6.509 15 C -0.153 4.153 16 C -0.094 4.094 17 N -0.463 5.463 18 H 0.454 0.546 19 N -0.345 5.345 20 C 0.232 3.768 21 C -0.563 4.563 22 H 0.032 0.968 23 C 0.026 3.974 24 N -0.933 5.933 25 Si 0.946 3.054 26 H -0.253 1.253 27 H -0.287 1.287 28 H -0.235 1.235 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.117 0.883 32 H 0.176 0.824 33 H 0.140 0.860 34 H 0.126 0.874 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.412 0.588 38 H 0.146 0.854 39 H 0.139 0.861 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.462 16.750 11.749 22.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.075 3.925 3 C -0.379 4.379 4 C 0.207 3.793 5 N -0.468 5.468 6 C 0.295 3.705 7 O -0.497 6.497 8 C -0.191 4.191 9 C -0.061 4.061 10 C -0.090 4.090 11 C -0.103 4.103 12 C -0.170 4.170 13 C 0.064 3.936 14 O -0.323 6.323 15 C -0.172 4.172 16 C -0.112 4.112 17 N -0.187 5.187 18 H 0.304 0.696 19 N -0.131 5.131 20 C 0.114 3.886 21 C -0.601 4.601 22 H 0.050 0.950 23 C -0.175 4.175 24 N -0.571 5.571 25 Si 0.768 3.232 26 H -0.177 1.177 27 H -0.213 1.213 28 H -0.158 1.158 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.135 0.865 32 H 0.193 0.807 33 H 0.158 0.842 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.168 0.832 37 H 0.272 0.728 38 H 0.163 0.837 39 H 0.157 0.843 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.617 16.151 11.042 21.801 hybrid contribution -0.141 -0.902 0.128 0.922 sum 9.476 15.249 11.170 21.145 Atomic orbital electron populations 1.20832 0.83350 1.06014 1.05049 1.21916 0.96116 0.84457 0.90055 1.22241 0.91401 1.00513 1.23738 1.19397 0.92189 0.82687 0.85047 1.69039 1.28297 1.05552 1.43881 1.19682 0.88645 0.86417 0.75758 1.90605 1.28312 1.79536 1.51223 1.22744 0.98152 0.93397 1.04786 1.22269 0.97754 0.92811 0.93286 1.19135 0.92626 0.93766 1.03518 1.21469 0.99984 0.91741 0.97062 1.21573 0.91377 1.01565 1.02503 1.18800 0.86686 0.89153 0.98957 1.84732 1.43890 1.67971 1.35676 1.21556 1.00042 0.92952 1.02613 1.21514 0.91253 1.00930 0.97462 1.44503 0.98863 1.04901 1.70395 0.69640 1.47440 0.93343 1.07634 1.64664 1.20269 0.97804 0.72973 0.97535 1.21311 1.47769 0.99197 0.91817 0.95013 1.25789 0.93436 0.99561 0.98670 1.70025 1.44700 1.20365 1.21980 0.85753 0.80787 0.77639 0.79067 1.17728 1.21300 1.15794 0.88998 0.88762 0.86490 0.80678 0.84221 0.85604 0.83578 0.83245 0.72804 0.83655 0.84340 0.91491 0.89102 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.37 10.09 71.24 0.72 -1.66 16 2 C 0.20 6.81 6.93 41.09 0.28 7.09 16 3 C -0.35 -13.32 9.41 22.25 0.21 -13.11 16 4 C 0.46 18.18 8.07 133.94 1.08 19.26 16 5 N -0.70 -28.73 10.53 -311.86 -3.28 -32.01 16 6 C 0.50 20.24 7.67 86.57 0.66 20.91 16 7 O -0.61 -26.70 13.17 -5.38 -0.07 -26.77 16 8 C -0.17 -5.35 9.51 23.69 0.23 -5.13 16 9 C -0.04 -1.12 9.45 23.80 0.22 -0.89 16 10 C -0.09 -2.01 5.87 -20.13 -0.12 -2.13 16 11 C -0.08 -1.55 9.79 22.55 0.22 -1.33 16 12 C -0.15 -2.44 9.97 22.32 0.22 -2.22 16 13 C 0.11 1.82 6.71 22.63 0.15 1.97 16 14 O -0.51 -6.94 13.49 -90.90 -1.23 -8.17 16 15 C -0.15 -2.67 9.97 22.32 0.22 -2.44 16 16 C -0.09 -1.89 9.40 22.55 0.21 -1.68 16 17 N -0.46 -16.51 7.38 -54.77 -0.40 -16.91 16 18 H 0.45 13.94 8.96 -213.28 -1.91 12.03 16 19 N -0.34 -12.37 3.63 -337.52 -1.23 -13.60 16 20 C 0.23 8.44 5.00 85.63 0.43 8.87 16 21 C -0.56 -27.09 9.94 25.60 0.25 -26.84 16 22 H 0.03 1.83 8.06 -2.91 -0.02 1.81 16 23 C 0.03 1.30 5.47 84.65 0.46 1.76 16 24 N -0.93 -51.76 13.96 21.44 0.30 -51.46 16 25 Si 0.95 34.90 27.47 68.60 1.88 36.79 16 26 H -0.25 -8.74 7.11 99.48 0.71 -8.03 16 27 H -0.29 -11.04 7.11 99.48 0.71 -10.33 16 28 H -0.23 -7.48 6.54 99.48 0.65 -6.83 16 29 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.09 2.09 7.14 -2.39 -0.02 2.07 16 31 H 0.12 2.26 8.14 -2.38 -0.02 2.24 16 32 H 0.18 7.06 5.77 -2.91 -0.02 7.04 16 33 H 0.14 3.83 6.06 -2.91 -0.02 3.81 16 34 H 0.13 3.53 7.52 -2.91 -0.02 3.51 16 35 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 36 H 0.15 1.73 8.06 -2.91 -0.02 1.71 16 37 H 0.41 1.45 9.06 -74.06 -0.67 0.78 16 38 H 0.15 1.99 8.06 -2.91 -0.02 1.96 16 39 H 0.14 2.59 6.16 -2.91 -0.02 2.57 16 40 H 0.07 2.25 7.20 -2.39 -0.02 2.23 16 41 H 0.09 2.82 6.60 -2.39 -0.02 2.81 16 42 H 0.27 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -72.34 364.93 -0.11 -72.45 By element: Atomic # 1 Polarization: 38.78 SS G_CDS: -1.55 Total: 37.23 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 5.46 Total: 2.45 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -4.61 Total: -113.98 kcal Atomic # 8 Polarization: -33.64 SS G_CDS: -1.30 Total: -34.94 kcal Atomic # 14 Polarization: 34.90 SS G_CDS: 1.88 Total: 36.79 kcal Total: -72.34 -0.11 -72.45 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492594197.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.700 kcal (2) G-P(sol) polarization free energy of solvation -72.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.446 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds