Wall clock time and date at job start Tue Mar 31 2020 14:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35017 * 125.52089 * 2 1 4 4 C 1.41183 * 108.23803 * 179.97438 * 3 2 1 5 5 N 1.32908 * 126.38210 * 179.97438 * 4 3 2 6 6 C 1.34040 * 119.99664 * 0.02701 * 5 4 3 7 7 O 1.21998 * 120.00287 * 0.02562 * 6 5 4 8 8 C 1.46863 * 119.99882 * 179.97438 * 6 5 4 9 9 C 1.34636 * 119.99690 * 173.21208 * 8 6 5 10 10 C 1.47259 * 120.00407 * 349.03027 * 9 8 6 11 11 C 1.39851 * 120.13857 * 136.37945 * 10 9 8 12 12 C 1.37906 * 119.93714 * 180.02562 * 11 10 9 13 13 C 1.38329 * 120.23283 * 359.97438 * 12 11 10 14 14 C 1.38858 * 120.27857 * 0.02562 * 13 12 11 15 15 O 1.35912 * 119.96400 * 179.97438 * 14 13 12 16 16 C 1.38424 * 120.06042 * 359.72562 * 14 13 12 17 17 N 1.37482 * 107.23731 * 359.97438 * 4 3 2 18 18 H 0.97002 * 126.36362 * 180.02562 * 17 4 3 19 19 N 1.36428 * 125.52320 * 179.97438 * 2 1 3 20 20 C 1.46499 * 125.85341 * 0.06003 * 19 2 1 21 21 C 1.50699 * 109.47047 * 84.99333 * 20 19 2 22 22 H 1.08003 * 120.00122 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00191 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99849 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00330 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46832 * 90.00259 * 25 23 21 27 27 H 1.48491 * 109.47194 * 210.00234 * 25 23 21 28 28 H 1.48503 * 109.46744 * 330.00355 * 25 23 21 29 29 H 1.08994 * 109.47325 * 90.02481 * 1 2 3 30 30 H 1.09003 * 109.47271 * 210.02823 * 1 2 3 31 31 H 1.09001 * 109.47317 * 330.02313 * 1 2 3 32 32 H 1.07996 * 125.88162 * 359.71700 * 3 2 1 33 33 H 1.08000 * 119.99871 * 353.22674 * 8 6 5 34 34 H 1.08008 * 119.99235 * 169.01867 * 9 8 6 35 35 H 1.08000 * 120.03397 * 359.97369 * 11 10 9 36 36 H 1.08006 * 119.88507 * 180.02562 * 12 11 10 37 37 H 1.07998 * 119.85993 * 180.02562 * 13 12 11 38 38 H 0.96698 * 113.99780 * 90.00213 * 15 14 13 39 39 H 1.07999 * 120.11619 * 180.30451 * 16 14 13 40 40 H 1.09000 * 109.47567 * 204.99569 * 20 19 2 41 41 H 1.08998 * 109.47029 * 325.00100 * 20 19 2 42 42 H 0.96997 * 120.00032 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2914 1.0989 0.0000 4 6 3.6395 0.6795 0.0006 5 7 4.7102 1.4670 0.0003 6 6 4.5622 2.7992 -0.0001 7 8 3.4448 3.2888 0.0003 8 6 5.7453 3.6694 0.0001 9 6 5.6015 5.0009 -0.1381 10 6 4.2983 5.5642 -0.5291 11 6 3.8011 6.6995 0.1189 12 6 2.5800 7.2232 -0.2503 13 6 1.8442 6.6298 -1.2603 14 6 2.3289 5.5023 -1.9098 15 8 1.6004 4.9241 -2.9009 16 6 3.5556 4.9697 -1.5523 17 7 3.6384 -0.6954 0.0015 18 1 4.4191 -1.2711 0.0025 19 7 2.2997 -1.1104 0.0005 20 6 1.8319 -2.4986 -0.0001 21 6 1.5551 -2.9348 -1.4158 22 1 1.7125 -2.2469 -2.2334 23 6 1.1011 -4.2122 -1.6674 24 7 0.9091 -5.0498 -0.6718 25 14 0.7588 -4.7531 -3.4224 26 1 1.9897 -5.3426 -4.0076 27 1 -0.3255 -5.7677 -3.4250 28 1 0.3401 -3.5790 -4.2294 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 1.9470 2.1225 -0.0043 33 1 6.7305 3.2412 0.1110 34 1 6.4420 5.6559 0.0380 35 1 4.3726 7.1651 0.9081 36 1 2.1970 8.1002 0.2504 37 1 0.8888 7.0452 -1.5448 38 1 1.7906 5.2720 -3.7829 39 1 3.9357 4.0957 -2.0603 40 1 2.5980 -3.1405 0.4346 41 1 0.9176 -2.5742 0.5885 42 1 0.5893 -5.9483 -0.8488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492732558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:17 Heat of formation + Delta-G solvation = 73.574905 kcal Electronic energy + Delta-G solvation = -26863.059640 eV Core-core repulsion = 23004.875362 eV Total energy + Delta-G solvation = -3858.184278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.90457 -39.67884 -38.36042 -36.53114 -34.47022 -33.41135 -33.02618 -32.18398 -30.78209 -29.75006 -29.22336 -27.52280 -26.81515 -24.35657 -23.04182 -22.28671 -21.86841 -20.45083 -19.61870 -18.70762 -17.62635 -17.09215 -16.80614 -16.27506 -15.98506 -15.32043 -15.14883 -14.95263 -14.86754 -14.45429 -14.14457 -13.81945 -13.35207 -13.29784 -12.94043 -12.80628 -12.66509 -12.51388 -12.37322 -12.10656 -11.98041 -11.81050 -11.64853 -11.39192 -11.29978 -11.06474 -10.52764 -10.39159 -10.28427 -9.70350 -9.46076 -9.34749 -8.92915 -8.86535 -8.61802 -8.28506 -7.69925 -6.92238 -6.49902 -4.66208 0.90781 1.53034 1.75785 2.04783 2.27980 3.05006 3.13070 3.16625 3.20172 3.92259 4.04670 4.23321 4.38454 4.66533 4.79989 4.87429 4.96208 5.04093 5.08436 5.28658 5.42634 5.55390 5.59314 5.76056 5.82302 5.87644 5.92911 6.12027 6.14990 6.18233 6.30030 6.38636 6.50040 6.54316 6.60147 6.65846 6.71920 6.79362 6.86442 7.04593 7.37698 7.49374 7.52441 7.67447 7.86539 7.97687 8.32398 8.43546 9.04284 9.37284 10.51965 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.002924 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.037522 B = 9572.523960 C =10262.613825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.190 3.810 3 C -0.330 4.330 4 C 0.469 3.531 5 N -0.695 5.695 6 C 0.506 3.494 7 O -0.562 6.562 8 C -0.143 4.143 9 C -0.079 4.079 10 C -0.037 4.037 11 C -0.116 4.116 12 C -0.122 4.122 13 C -0.142 4.142 14 C 0.089 3.911 15 O -0.496 6.496 16 C -0.054 4.054 17 N -0.468 5.468 18 H 0.445 0.555 19 N -0.339 5.339 20 C 0.254 3.746 21 C -0.555 4.555 22 H 0.069 0.931 23 C 0.071 3.929 24 N -0.887 5.887 25 Si 0.909 3.091 26 H -0.276 1.276 27 H -0.281 1.281 28 H -0.269 1.269 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.184 0.816 33 H 0.129 0.871 34 H 0.130 0.870 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.380 0.620 39 H 0.118 0.882 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.404 16.690 0.297 17.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 C -0.361 4.361 4 C 0.220 3.780 5 N -0.459 5.459 6 C 0.294 3.706 7 O -0.445 6.445 8 C -0.164 4.164 9 C -0.098 4.098 10 C -0.037 4.037 11 C -0.134 4.134 12 C -0.140 4.140 13 C -0.161 4.161 14 C 0.045 3.955 15 O -0.305 6.305 16 C -0.073 4.073 17 N -0.190 5.190 18 H 0.292 0.708 19 N -0.126 5.126 20 C 0.138 3.862 21 C -0.594 4.594 22 H 0.087 0.913 23 C -0.134 4.134 24 N -0.523 5.523 25 Si 0.735 3.265 26 H -0.202 1.202 27 H -0.206 1.206 28 H -0.194 1.194 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.201 0.799 33 H 0.147 0.853 34 H 0.147 0.853 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.235 0.765 39 H 0.136 0.864 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.328 15.728 0.827 16.098 hybrid contribution -0.031 -0.512 -1.222 1.326 sum 3.298 15.216 -0.395 15.574 Atomic orbital electron populations 1.20595 0.86373 1.03814 1.04328 1.21349 0.94505 0.85594 0.92275 1.22289 0.91137 1.00339 1.22365 1.19164 0.91712 0.82080 0.85014 1.68966 1.28072 1.05279 1.43570 1.19137 0.88078 0.86178 0.77220 1.90733 1.26823 1.78310 1.48584 1.22975 0.99027 0.93138 1.01235 1.22190 0.95534 0.94769 0.97354 1.18706 0.94641 0.94736 0.95660 1.21129 0.96543 0.96053 0.99721 1.20736 0.95032 1.00321 0.97928 1.21342 1.00270 0.95816 0.98664 1.18249 0.91015 0.93237 0.93036 1.84923 1.63771 1.64198 1.17583 1.21334 0.92850 0.96586 0.96549 1.44566 0.98859 1.05243 1.70327 0.70825 1.47931 0.92744 1.08210 1.63676 1.20036 0.96465 0.70182 0.99562 1.21374 1.47616 0.98760 0.91605 0.91281 1.24945 0.94236 0.95784 0.98466 1.69896 1.44042 1.06953 1.31454 0.86303 0.78353 0.78744 0.83098 1.20201 1.20649 1.19382 0.89110 0.90131 0.89573 0.79910 0.85317 0.85269 0.86333 0.86277 0.86250 0.76540 0.86363 0.93126 0.91462 0.91837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.38 10.09 36.01 0.36 -1.02 16 2 C 0.19 3.50 6.93 -81.69 -0.57 2.93 16 3 C -0.33 -6.54 9.41 -39.61 -0.37 -6.91 16 4 C 0.47 9.45 8.07 -155.26 -1.25 8.20 16 5 N -0.70 -13.98 10.53 -12.45 -0.13 -14.12 16 6 C 0.51 9.76 6.71 -13.10 -0.09 9.67 16 7 O -0.56 -11.62 9.09 4.92 0.04 -11.57 16 8 C -0.14 -2.17 10.01 -37.37 -0.37 -2.55 16 9 C -0.08 -1.03 9.80 -37.19 -0.36 -1.40 16 10 C -0.04 -0.54 4.53 -105.08 -0.48 -1.02 16 11 C -0.12 -1.49 9.79 -39.10 -0.38 -1.87 16 12 C -0.12 -1.48 10.02 -39.67 -0.40 -1.88 16 13 C -0.14 -1.88 9.98 -39.32 -0.39 -2.27 16 14 C 0.09 1.34 6.70 -39.28 -0.26 1.07 16 15 O -0.50 -7.06 13.50 -19.46 -0.26 -7.32 16 16 C -0.05 -0.87 6.53 -38.96 -0.25 -1.13 16 17 N -0.47 -8.74 7.38 31.33 0.23 -8.51 16 18 H 0.44 7.27 8.96 -182.55 -1.64 5.64 16 19 N -0.34 -6.61 3.63 -58.03 -0.21 -6.82 16 20 C 0.25 5.41 5.93 -5.19 -0.03 5.38 16 21 C -0.56 -13.32 9.39 -34.44 -0.32 -13.64 16 22 H 0.07 1.72 7.81 -52.48 -0.41 1.31 16 23 C 0.07 1.73 5.46 -17.82 -0.10 1.63 16 24 N -0.89 -22.54 13.29 55.43 0.74 -21.81 16 25 Si 0.91 19.33 29.54 -169.99 -5.02 14.31 16 26 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 27 H -0.28 -5.92 7.11 56.52 0.40 -5.51 16 28 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 29 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.08 1.17 7.14 -51.93 -0.37 0.80 16 31 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 32 H 0.18 3.85 5.77 -52.49 -0.30 3.55 16 33 H 0.13 1.69 8.06 -52.49 -0.42 1.27 16 34 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 36 H 0.12 1.12 8.06 -52.48 -0.42 0.69 16 37 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.38 3.32 9.06 45.56 0.41 3.74 16 39 H 0.12 2.08 7.03 -52.49 -0.37 1.71 16 40 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 41 H 0.07 1.44 7.18 -51.93 -0.37 1.07 16 42 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -30.75 363.61 -9.97 -40.73 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -5.57 Total: 14.42 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: -5.27 Total: -4.79 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: 0.63 Total: -51.25 kcal Atomic # 8 Polarization: -18.68 SS G_CDS: -0.22 Total: -18.90 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -30.75 -9.97 -40.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492732558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.302 kcal (2) G-P(sol) polarization free energy of solvation -30.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.727 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds