Wall clock time and date at job start Tue Mar 31 2020 14:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35017 * 125.52089 * 2 1 4 4 C 1.41183 * 108.23803 * 179.97438 * 3 2 1 5 5 N 1.32908 * 126.38210 * 179.97438 * 4 3 2 6 6 C 1.34040 * 119.99664 * 0.02701 * 5 4 3 7 7 O 1.21998 * 120.00287 * 0.02562 * 6 5 4 8 8 C 1.46863 * 119.99882 * 179.97438 * 6 5 4 9 9 C 1.34636 * 119.99690 * 173.21208 * 8 6 5 10 10 C 1.47259 * 120.00407 * 349.03027 * 9 8 6 11 11 C 1.39851 * 120.13857 * 136.37945 * 10 9 8 12 12 C 1.37906 * 119.93714 * 180.02562 * 11 10 9 13 13 C 1.38329 * 120.23283 * 359.97438 * 12 11 10 14 14 C 1.38858 * 120.27857 * 0.02562 * 13 12 11 15 15 O 1.35912 * 119.96400 * 179.97438 * 14 13 12 16 16 C 1.38424 * 120.06042 * 359.72562 * 14 13 12 17 17 N 1.37482 * 107.23731 * 359.97438 * 4 3 2 18 18 H 0.97002 * 126.36362 * 180.02562 * 17 4 3 19 19 N 1.36428 * 125.52320 * 179.97438 * 2 1 3 20 20 C 1.46499 * 125.85341 * 0.06003 * 19 2 1 21 21 C 1.50699 * 109.47047 * 84.99333 * 20 19 2 22 22 H 1.08003 * 120.00122 * 0.02562 * 21 20 19 23 23 C 1.37878 * 120.00191 * 180.02562 * 21 20 19 24 24 N 1.31516 * 119.99849 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00330 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46832 * 90.00259 * 25 23 21 27 27 H 1.48491 * 109.47194 * 210.00234 * 25 23 21 28 28 H 1.48503 * 109.46744 * 330.00355 * 25 23 21 29 29 H 1.08994 * 109.47325 * 90.02481 * 1 2 3 30 30 H 1.09003 * 109.47271 * 210.02823 * 1 2 3 31 31 H 1.09001 * 109.47317 * 330.02313 * 1 2 3 32 32 H 1.07996 * 125.88162 * 359.71700 * 3 2 1 33 33 H 1.08000 * 119.99871 * 353.22674 * 8 6 5 34 34 H 1.08008 * 119.99235 * 169.01867 * 9 8 6 35 35 H 1.08000 * 120.03397 * 359.97369 * 11 10 9 36 36 H 1.08006 * 119.88507 * 180.02562 * 12 11 10 37 37 H 1.07998 * 119.85993 * 180.02562 * 13 12 11 38 38 H 0.96698 * 113.99780 * 90.00213 * 15 14 13 39 39 H 1.07999 * 120.11619 * 180.30451 * 16 14 13 40 40 H 1.09000 * 109.47567 * 204.99569 * 20 19 2 41 41 H 1.08998 * 109.47029 * 325.00100 * 20 19 2 42 42 H 0.96997 * 120.00032 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2914 1.0989 0.0000 4 6 3.6395 0.6795 0.0006 5 7 4.7102 1.4670 0.0003 6 6 4.5622 2.7992 -0.0001 7 8 3.4448 3.2888 0.0003 8 6 5.7453 3.6694 0.0001 9 6 5.6015 5.0009 -0.1381 10 6 4.2983 5.5642 -0.5291 11 6 3.8011 6.6995 0.1189 12 6 2.5800 7.2232 -0.2503 13 6 1.8442 6.6298 -1.2603 14 6 2.3289 5.5023 -1.9098 15 8 1.6004 4.9241 -2.9009 16 6 3.5556 4.9697 -1.5523 17 7 3.6384 -0.6954 0.0015 18 1 4.4191 -1.2711 0.0025 19 7 2.2997 -1.1104 0.0005 20 6 1.8319 -2.4986 -0.0001 21 6 1.5551 -2.9348 -1.4158 22 1 1.7125 -2.2469 -2.2334 23 6 1.1011 -4.2122 -1.6674 24 7 0.9091 -5.0498 -0.6718 25 14 0.7588 -4.7531 -3.4224 26 1 1.9897 -5.3426 -4.0076 27 1 -0.3255 -5.7677 -3.4250 28 1 0.3401 -3.5790 -4.2294 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3634 0.8902 0.5135 32 1 1.9470 2.1225 -0.0043 33 1 6.7305 3.2412 0.1110 34 1 6.4420 5.6559 0.0380 35 1 4.3726 7.1651 0.9081 36 1 2.1970 8.1002 0.2504 37 1 0.8888 7.0452 -1.5448 38 1 1.7906 5.2720 -3.7829 39 1 3.9357 4.0957 -2.0603 40 1 2.5980 -3.1405 0.4346 41 1 0.9176 -2.5742 0.5885 42 1 0.5893 -5.9483 -0.8488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492732558.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:16 Heat of formation + Delta-G solvation = 53.625039 kcal Electronic energy + Delta-G solvation = -26863.924732 eV Core-core repulsion = 23004.875362 eV Total energy + Delta-G solvation = -3859.049369 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.42027 -40.82523 -39.67891 -37.62830 -36.07619 -34.91162 -34.35985 -33.65108 -32.39188 -30.85731 -30.32210 -28.87242 -28.50080 -25.74693 -24.59217 -23.45705 -23.07545 -21.81536 -21.06923 -19.91207 -19.02194 -18.74966 -18.31634 -17.43186 -17.26074 -16.77093 -16.47055 -16.40090 -16.22763 -15.71519 -15.60045 -15.12893 -14.58851 -14.52183 -14.32996 -14.30656 -14.15521 -13.83136 -13.68005 -13.47871 -13.21638 -13.17456 -12.96161 -12.75452 -12.69870 -12.38865 -12.30928 -12.05740 -11.38499 -11.09974 -10.86364 -10.79327 -10.69472 -10.34952 -10.00285 -9.37926 -8.90982 -8.58476 -8.26174 -6.58323 -0.28929 0.31223 0.52283 0.59397 1.09945 1.36101 1.40337 1.49305 1.74591 2.28689 2.72404 2.90173 2.92719 3.20545 3.39626 3.59696 3.66917 3.93193 4.09918 4.20753 4.25982 4.28728 4.44267 4.57851 4.63282 4.75698 4.76705 4.81018 4.85874 4.90015 5.02094 5.07952 5.13741 5.26434 5.32127 5.44474 5.48906 5.59453 5.64410 5.67599 5.76516 5.98890 6.06648 6.14245 6.41478 6.60680 6.86848 6.93989 7.15296 7.89240 8.64603 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.017376 B = 0.002924 C = 0.002728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.037522 B = 9572.523960 C =10262.613825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.195 3.805 3 C -0.344 4.344 4 C 0.457 3.543 5 N -0.708 5.708 6 C 0.493 3.507 7 O -0.581 6.581 8 C -0.175 4.175 9 C -0.047 4.047 10 C -0.060 4.060 11 C -0.116 4.116 12 C -0.118 4.118 13 C -0.148 4.148 14 C 0.072 3.928 15 O -0.515 6.515 16 C -0.077 4.077 17 N -0.466 5.466 18 H 0.452 0.548 19 N -0.346 5.346 20 C 0.267 3.733 21 C -0.563 4.563 22 H 0.056 0.944 23 C 0.033 3.967 24 N -0.912 5.912 25 Si 0.963 3.037 26 H -0.276 1.276 27 H -0.275 1.275 28 H -0.271 1.271 29 H 0.096 0.904 30 H 0.086 0.914 31 H 0.110 0.890 32 H 0.171 0.829 33 H 0.147 0.853 34 H 0.175 0.825 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.138 0.862 38 H 0.401 0.599 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.069 0.931 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.297 18.637 0.568 18.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.069 3.931 3 C -0.375 4.375 4 C 0.207 3.793 5 N -0.472 5.472 6 C 0.282 3.718 7 O -0.465 6.465 8 C -0.195 4.195 9 C -0.067 4.067 10 C -0.060 4.060 11 C -0.134 4.134 12 C -0.136 4.136 13 C -0.166 4.166 14 C 0.028 3.972 15 O -0.327 6.327 16 C -0.096 4.096 17 N -0.189 5.189 18 H 0.301 0.699 19 N -0.133 5.133 20 C 0.150 3.850 21 C -0.601 4.601 22 H 0.074 0.926 23 C -0.170 4.170 24 N -0.549 5.549 25 Si 0.787 3.213 26 H -0.202 1.202 27 H -0.200 1.200 28 H -0.195 1.195 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.129 0.871 32 H 0.189 0.811 33 H 0.165 0.835 34 H 0.192 0.808 35 H 0.167 0.833 36 H 0.171 0.829 37 H 0.156 0.844 38 H 0.258 0.742 39 H 0.107 0.893 40 H 0.061 0.939 41 H 0.087 0.913 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.242 17.696 1.087 18.023 hybrid contribution -0.015 -0.956 -1.334 1.641 sum 3.227 16.739 -0.247 17.049 Atomic orbital electron populations 1.20752 0.83844 1.05298 1.05026 1.21849 0.95954 0.84684 0.90656 1.22152 0.91469 1.00124 1.23786 1.19391 0.92134 0.82555 0.85213 1.69069 1.28180 1.06011 1.43917 1.19863 0.89302 0.86217 0.76386 1.90716 1.27943 1.78524 1.49325 1.22951 0.98222 0.93519 1.04817 1.22659 0.96142 0.94417 0.93445 1.19017 0.95454 0.95686 0.95868 1.21512 0.97002 0.95087 0.99783 1.21185 0.94501 1.00852 0.97035 1.21619 1.01147 0.95169 0.98672 1.18497 0.90903 0.94086 0.93677 1.84849 1.63878 1.65006 1.18937 1.21243 0.93997 0.96418 0.97974 1.44538 0.98892 1.04978 1.70533 0.69939 1.47802 0.93244 1.07939 1.64294 1.19725 0.96213 0.70816 0.98208 1.21510 1.47471 0.98717 0.92418 0.92613 1.25575 0.94094 0.95851 1.01444 1.69957 1.44792 1.07296 1.32891 0.85470 0.78177 0.78253 0.79359 1.20206 1.19982 1.19509 0.88599 0.89562 0.87136 0.81147 0.83534 0.80809 0.83309 0.82865 0.84383 0.74211 0.89344 0.93931 0.91291 0.91605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.64 10.09 71.24 0.72 -1.92 16 2 C 0.19 7.24 6.93 41.10 0.28 7.53 16 3 C -0.34 -14.00 9.41 22.25 0.21 -13.79 16 4 C 0.46 18.93 8.07 133.93 1.08 20.01 16 5 N -0.71 -29.33 10.53 -311.82 -3.28 -32.61 16 6 C 0.49 19.46 6.71 86.62 0.58 20.05 16 7 O -0.58 -24.73 9.09 -5.31 -0.05 -24.78 16 8 C -0.17 -5.22 10.01 23.70 0.24 -4.98 16 9 C -0.05 -1.15 9.80 23.82 0.23 -0.92 16 10 C -0.06 -1.68 4.53 -20.16 -0.09 -1.77 16 11 C -0.12 -2.63 9.79 22.58 0.22 -2.41 16 12 C -0.12 -2.51 10.02 22.21 0.22 -2.29 16 13 C -0.15 -3.65 9.98 22.44 0.22 -3.42 16 14 C 0.07 2.19 6.70 22.46 0.15 2.34 16 15 O -0.51 -14.93 13.50 -92.56 -1.25 -16.18 16 16 C -0.08 -2.53 6.53 22.67 0.15 -2.38 16 17 N -0.47 -17.82 7.38 -54.78 -0.40 -18.22 16 18 H 0.45 15.22 8.96 -213.28 -1.91 13.30 16 19 N -0.35 -13.66 3.63 -337.52 -1.23 -14.89 16 20 C 0.27 11.47 5.93 85.63 0.51 11.98 16 21 C -0.56 -27.05 9.39 25.60 0.24 -26.81 16 22 H 0.06 2.80 7.81 -2.91 -0.02 2.77 16 23 C 0.03 1.60 5.46 84.65 0.46 2.06 16 24 N -0.91 -46.11 13.29 21.45 0.28 -45.83 16 25 Si 0.96 39.30 29.54 68.60 2.03 41.32 16 26 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 27 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 28 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 29 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 30 H 0.09 2.41 7.14 -2.39 -0.02 2.39 16 31 H 0.11 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.17 7.45 5.77 -2.91 -0.02 7.43 16 33 H 0.15 3.72 8.06 -2.91 -0.02 3.70 16 34 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 35 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 36 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.14 2.80 8.06 -2.91 -0.02 2.77 16 38 H 0.40 7.15 9.06 -74.06 -0.67 6.48 16 39 H 0.09 3.33 7.03 -2.91 -0.02 3.31 16 40 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.07 2.95 7.18 -2.39 -0.02 2.94 16 42 H 0.27 13.17 8.31 -92.71 -0.77 12.40 16 Total: -1.00 -67.13 363.61 0.03 -67.10 By element: Atomic # 1 Polarization: 42.30 SS G_CDS: -1.50 Total: 40.80 kcal Atomic # 6 Polarization: -2.16 SS G_CDS: 5.43 Total: 3.27 kcal Atomic # 7 Polarization: -106.92 SS G_CDS: -4.63 Total: -111.54 kcal Atomic # 8 Polarization: -39.66 SS G_CDS: -1.30 Total: -40.95 kcal Atomic # 14 Polarization: 39.30 SS G_CDS: 2.03 Total: 41.32 kcal Total: -67.13 0.03 -67.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492732558.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.728 kcal (2) G-P(sol) polarization free energy of solvation -67.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.103 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds