Wall clock time and date at job start Tue Mar 31 2020 14:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35021 * 125.51859 * 2 1 4 4 C 1.41179 * 108.23825 * 179.97438 * 3 2 1 5 5 N 1.32907 * 126.37987 * 180.02562 * 4 3 2 6 6 C 1.34040 * 120.00346 * 0.02562 * 5 4 3 7 7 O 1.21997 * 119.99648 * 359.97438 * 6 5 4 8 8 C 1.46853 * 120.00036 * 179.97438 * 6 5 4 9 9 C 1.34641 * 119.99809 * 180.02562 * 8 6 5 10 10 C 1.47257 * 120.00023 * 180.02562 * 9 8 6 11 11 C 1.39849 * 120.14412 * 0.25419 * 10 9 8 12 12 C 1.37902 * 119.94442 * 180.27645 * 11 10 9 13 13 C 1.38328 * 120.22789 * 359.74337 * 12 11 10 14 14 C 1.38857 * 120.28590 * 359.97438 * 13 12 11 15 15 O 1.35906 * 119.97677 * 180.02562 * 14 13 12 16 16 C 1.38434 * 120.05437 * 0.02562 * 14 13 12 17 17 N 1.37487 * 107.23959 * 0.26296 * 4 3 2 18 18 H 0.96996 * 126.36805 * 179.69559 * 17 4 3 19 19 N 1.36433 * 125.52629 * 179.97438 * 2 1 3 20 20 C 1.46497 * 125.85061 * 0.05643 * 19 2 1 21 21 C 1.50706 * 109.47058 * 84.99714 * 20 19 2 22 22 H 1.07996 * 119.99953 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99969 * 179.97438 * 21 20 19 24 24 N 1.31508 * 120.00077 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99837 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46910 * 89.99736 * 25 23 21 27 27 H 1.48495 * 109.46874 * 209.99877 * 25 23 21 28 28 H 1.48502 * 109.46799 * 329.99762 * 25 23 21 29 29 H 1.08993 * 109.47313 * 90.02228 * 1 2 3 30 30 H 1.09004 * 109.46524 * 210.02407 * 1 2 3 31 31 H 1.08999 * 109.47219 * 330.01640 * 1 2 3 32 32 H 1.07997 * 125.87740 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.00455 * 359.97438 * 8 6 5 34 34 H 1.08006 * 119.99731 * 359.97438 * 9 8 6 35 35 H 1.08003 * 120.02628 * 359.97278 * 11 10 9 36 36 H 1.07994 * 119.88888 * 179.71675 * 12 11 10 37 37 H 1.08003 * 119.86055 * 179.97438 * 13 12 11 38 38 H 0.96704 * 113.99869 * 270.02046 * 15 14 13 39 39 H 1.08002 * 120.11199 * 179.97438 * 16 14 13 40 40 H 1.08998 * 109.47361 * 205.00069 * 20 19 2 41 41 H 1.08997 * 109.46927 * 325.00069 * 20 19 2 42 42 H 0.96999 * 120.00400 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.0990 0.0000 4 6 3.6395 0.6796 0.0006 5 7 4.7101 1.4672 0.0013 6 6 4.5622 2.7994 0.0019 7 8 3.4448 3.2890 0.0015 8 6 5.7452 3.6695 0.0032 9 6 5.5965 5.0077 0.0044 10 6 6.7827 5.8803 0.0052 11 6 8.0650 5.3223 -0.0007 12 6 9.1730 6.1433 0.0057 13 6 9.0210 7.5181 0.0127 14 6 7.7522 8.0824 0.0127 15 8 7.6102 9.4340 0.0191 16 6 6.6319 7.2693 0.0062 17 7 3.6386 -0.6953 -0.0051 18 1 4.4192 -1.2709 -0.0102 19 7 2.2998 -1.1104 0.0005 20 6 1.8320 -2.4986 -0.0001 21 6 1.5553 -2.9349 -1.4158 22 1 1.7118 -2.2468 -2.2333 23 6 1.1023 -4.2126 -1.6674 24 7 0.8604 -4.5932 -2.9027 25 14 0.8309 -5.4027 -0.2532 26 1 -0.5631 -5.2730 0.2422 27 1 1.0616 -6.7919 -0.7242 28 1 1.7783 -5.0890 0.8464 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3632 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5136 32 1 1.9469 2.1225 -0.0004 33 1 6.7344 3.2362 0.0041 34 1 4.6072 5.4411 0.0040 35 1 8.1875 4.2492 -0.0054 36 1 10.1628 5.7114 0.0058 37 1 9.8929 8.1555 0.0182 38 1 7.5674 9.8208 0.9043 39 1 5.6446 7.7072 0.0067 40 1 2.5982 -3.1404 0.4348 41 1 0.9178 -2.5741 0.5886 42 1 0.5413 -5.4919 -3.0797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492732559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:22 Heat of formation + Delta-G solvation = 64.754550 kcal Electronic energy + Delta-G solvation = -25284.230962 eV Core-core repulsion = 21425.664205 eV Total energy + Delta-G solvation = -3858.566757 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.03518 -39.91641 -38.57218 -37.11273 -34.54974 -33.61058 -33.13321 -32.35137 -31.11628 -30.59931 -29.24677 -27.64091 -27.27012 -24.60218 -22.93244 -22.70046 -21.95678 -20.45858 -19.74636 -18.86038 -17.89033 -17.49035 -17.14635 -16.67650 -16.11457 -15.78831 -15.31908 -15.16852 -14.98321 -14.64427 -14.26094 -13.93699 -13.69422 -13.48646 -13.07955 -13.03007 -12.80930 -12.78038 -12.64164 -12.49359 -12.35427 -12.05719 -11.93273 -11.53907 -11.38148 -11.06978 -10.76565 -10.72612 -10.26287 -10.08367 -9.59517 -9.51820 -9.08587 -8.98554 -8.97546 -8.48722 -8.28754 -6.99254 -6.55370 -4.64146 0.50022 1.06438 1.49356 1.88328 2.21937 2.92525 2.97112 3.04002 3.05630 3.55776 3.91170 3.93550 4.06206 4.52506 4.57608 4.64033 4.72307 4.85128 4.89260 4.98850 5.09923 5.27083 5.39731 5.41280 5.61024 5.64737 5.71970 5.73882 5.95795 6.01404 6.04539 6.10855 6.14882 6.18294 6.20082 6.29104 6.54305 6.61420 6.67381 6.73511 6.88629 7.33045 7.37175 7.51362 7.78099 7.98816 8.19659 8.47957 8.96719 9.23997 10.56057 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.032337 B = 0.001844 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.673936 B =15177.301545 C =15623.983437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.193 3.807 3 C -0.330 4.330 4 C 0.473 3.527 5 N -0.692 5.692 6 C 0.517 3.483 7 O -0.581 6.581 8 C -0.133 4.133 9 C -0.077 4.077 10 C -0.036 4.036 11 C -0.118 4.118 12 C -0.103 4.103 13 C -0.148 4.148 14 C 0.101 3.899 15 O -0.500 6.500 16 C -0.131 4.131 17 N -0.466 5.466 18 H 0.446 0.554 19 N -0.338 5.338 20 C 0.227 3.773 21 C -0.563 4.563 22 H 0.085 0.915 23 C 0.085 3.915 24 N -0.875 5.875 25 Si 0.872 3.128 26 H -0.268 1.268 27 H -0.277 1.277 28 H -0.265 1.265 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.185 0.815 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.389 0.611 39 H 0.132 0.868 40 H 0.049 0.951 41 H 0.060 0.940 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.077 15.744 9.483 20.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 C -0.362 4.362 4 C 0.224 3.776 5 N -0.455 5.455 6 C 0.305 3.695 7 O -0.465 6.465 8 C -0.154 4.154 9 C -0.097 4.097 10 C -0.036 4.036 11 C -0.136 4.136 12 C -0.121 4.121 13 C -0.166 4.166 14 C 0.057 3.943 15 O -0.310 6.310 16 C -0.150 4.150 17 N -0.188 5.188 18 H 0.294 0.706 19 N -0.124 5.124 20 C 0.109 3.891 21 C -0.601 4.601 22 H 0.103 0.897 23 C -0.122 4.122 24 N -0.510 5.510 25 Si 0.698 3.302 26 H -0.193 1.193 27 H -0.202 1.202 28 H -0.190 1.190 29 H 0.113 0.887 30 H 0.097 0.903 31 H 0.106 0.894 32 H 0.202 0.798 33 H 0.144 0.856 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.245 0.755 39 H 0.150 0.850 40 H 0.067 0.933 41 H 0.077 0.923 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.254 15.096 8.742 19.747 hybrid contribution -0.186 -0.852 0.919 1.267 sum 9.068 14.245 9.661 19.454 Atomic orbital electron populations 1.20629 0.86161 1.03799 1.04667 1.21363 0.94538 0.85388 0.91982 1.22298 0.91162 1.00350 1.22383 1.19140 0.91700 0.82060 0.84700 1.68948 1.28032 1.05101 1.43453 1.19036 0.87693 0.86199 0.76586 1.90637 1.27063 1.79255 1.49541 1.22922 0.99084 0.93219 1.00135 1.22180 0.97087 0.93210 0.97238 1.18974 0.93232 0.92527 0.98902 1.21531 0.91608 1.00637 0.99850 1.20973 0.98964 0.92834 0.99321 1.21492 0.96829 0.95599 1.02713 1.18352 0.92144 0.82860 1.00924 1.84838 1.95656 1.17059 1.33482 1.21625 0.98969 0.92729 1.01661 1.44488 0.98563 1.05243 1.70501 0.70629 1.47404 0.93038 1.07536 1.64439 1.20334 0.95984 0.72455 1.00290 1.21202 1.48360 0.99934 0.90599 0.89668 1.24811 0.93996 0.97511 0.95869 1.69848 1.42556 1.19646 1.18925 0.86922 0.79583 0.81407 0.82296 1.19293 1.20214 1.18980 0.88710 0.90296 0.89351 0.79799 0.85571 0.84928 0.84916 0.85369 0.85562 0.75512 0.84984 0.93317 0.92265 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 10.09 36.01 0.36 -0.90 16 2 C 0.19 3.33 6.93 -81.69 -0.57 2.77 16 3 C -0.33 -6.21 9.41 -39.61 -0.37 -6.59 16 4 C 0.47 9.20 8.07 -155.26 -1.25 7.95 16 5 N -0.69 -13.65 10.53 -12.46 -0.13 -13.78 16 6 C 0.52 9.99 7.67 -13.10 -0.10 9.89 16 7 O -0.58 -12.25 13.17 4.92 0.06 -12.18 16 8 C -0.13 -2.04 9.52 -37.37 -0.36 -2.39 16 9 C -0.08 -1.06 9.46 -37.19 -0.35 -1.41 16 10 C -0.04 -0.43 5.87 -105.08 -0.62 -1.04 16 11 C -0.12 -1.24 9.41 -39.10 -0.37 -1.61 16 12 C -0.10 -0.92 10.02 -39.67 -0.40 -1.32 16 13 C -0.15 -1.34 9.98 -39.32 -0.39 -1.73 16 14 C 0.10 1.01 6.70 -39.28 -0.26 0.75 16 15 O -0.50 -4.34 13.50 -19.44 -0.26 -4.60 16 16 C -0.13 -1.42 9.73 -38.96 -0.38 -1.80 16 17 N -0.47 -8.25 7.38 31.33 0.23 -8.02 16 18 H 0.45 6.82 8.96 -182.55 -1.64 5.18 16 19 N -0.34 -6.19 3.63 -58.03 -0.21 -6.40 16 20 C 0.23 4.36 5.00 -5.19 -0.03 4.33 16 21 C -0.56 -13.46 9.94 -34.44 -0.34 -13.80 16 22 H 0.09 2.35 8.06 -52.49 -0.42 1.93 16 23 C 0.08 2.08 5.47 -17.82 -0.10 1.99 16 24 N -0.87 -23.58 13.96 55.43 0.77 -22.81 16 25 Si 0.87 17.63 27.47 -169.99 -4.67 12.96 16 26 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 27 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 28 H -0.27 -5.00 6.54 56.52 0.37 -4.63 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.08 0.99 7.14 -51.93 -0.37 0.62 16 31 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.19 3.58 5.77 -52.49 -0.30 3.28 16 33 H 0.13 1.68 6.07 -52.49 -0.32 1.36 16 34 H 0.13 1.87 7.52 -52.48 -0.39 1.48 16 35 H 0.13 1.26 6.16 -52.48 -0.32 0.93 16 36 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 37 H 0.13 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.39 1.44 9.06 45.56 0.41 1.85 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 40 H 0.05 0.90 7.20 -51.93 -0.37 0.53 16 41 H 0.06 1.04 6.61 -51.93 -0.34 0.70 16 42 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 364.96 15.07 5.50 5.50 Total: -1.00 -32.00 364.96 -9.58 -41.57 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -5.35 Total: 12.68 kcal Atomic # 6 Polarization: 0.61 SS G_CDS: -5.52 Total: -4.91 kcal Atomic # 7 Polarization: -51.67 SS G_CDS: 0.66 Total: -51.01 kcal Atomic # 8 Polarization: -16.59 SS G_CDS: -0.20 Total: -16.79 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -4.67 Total: 12.96 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.00 -9.58 -41.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492732559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.329 kcal (2) G-P(sol) polarization free energy of solvation -31.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds