Wall clock time and date at job start Tue Mar 31 2020 14:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35021 * 125.51859 * 2 1 4 4 C 1.41179 * 108.23825 * 179.97438 * 3 2 1 5 5 N 1.32907 * 126.37987 * 180.02562 * 4 3 2 6 6 C 1.34040 * 120.00346 * 0.02562 * 5 4 3 7 7 O 1.21997 * 119.99648 * 359.97438 * 6 5 4 8 8 C 1.46853 * 120.00036 * 179.97438 * 6 5 4 9 9 C 1.34641 * 119.99809 * 180.02562 * 8 6 5 10 10 C 1.47257 * 120.00023 * 180.02562 * 9 8 6 11 11 C 1.39849 * 120.14412 * 0.25419 * 10 9 8 12 12 C 1.37902 * 119.94442 * 180.27645 * 11 10 9 13 13 C 1.38328 * 120.22789 * 359.74337 * 12 11 10 14 14 C 1.38857 * 120.28590 * 359.97438 * 13 12 11 15 15 O 1.35906 * 119.97677 * 180.02562 * 14 13 12 16 16 C 1.38434 * 120.05437 * 0.02562 * 14 13 12 17 17 N 1.37487 * 107.23959 * 0.26296 * 4 3 2 18 18 H 0.96996 * 126.36805 * 179.69559 * 17 4 3 19 19 N 1.36433 * 125.52629 * 179.97438 * 2 1 3 20 20 C 1.46497 * 125.85061 * 0.05643 * 19 2 1 21 21 C 1.50706 * 109.47058 * 84.99714 * 20 19 2 22 22 H 1.07996 * 119.99953 * 359.97438 * 21 20 19 23 23 C 1.37878 * 119.99969 * 179.97438 * 21 20 19 24 24 N 1.31508 * 120.00077 * 179.97438 * 23 21 20 25 25 Si 1.86808 * 119.99837 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.46910 * 89.99736 * 25 23 21 27 27 H 1.48495 * 109.46874 * 209.99877 * 25 23 21 28 28 H 1.48502 * 109.46799 * 329.99762 * 25 23 21 29 29 H 1.08993 * 109.47313 * 90.02228 * 1 2 3 30 30 H 1.09004 * 109.46524 * 210.02407 * 1 2 3 31 31 H 1.08999 * 109.47219 * 330.01640 * 1 2 3 32 32 H 1.07997 * 125.87740 * 359.97438 * 3 2 1 33 33 H 1.07996 * 120.00455 * 359.97438 * 8 6 5 34 34 H 1.08006 * 119.99731 * 359.97438 * 9 8 6 35 35 H 1.08003 * 120.02628 * 359.97278 * 11 10 9 36 36 H 1.07994 * 119.88888 * 179.71675 * 12 11 10 37 37 H 1.08003 * 119.86055 * 179.97438 * 13 12 11 38 38 H 0.96704 * 113.99869 * 270.02046 * 15 14 13 39 39 H 1.08002 * 120.11199 * 179.97438 * 16 14 13 40 40 H 1.08998 * 109.47361 * 205.00069 * 20 19 2 41 41 H 1.08997 * 109.46927 * 325.00069 * 20 19 2 42 42 H 0.96999 * 120.00400 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.0990 0.0000 4 6 3.6395 0.6796 0.0006 5 7 4.7101 1.4672 0.0013 6 6 4.5622 2.7994 0.0019 7 8 3.4448 3.2890 0.0015 8 6 5.7452 3.6695 0.0032 9 6 5.5965 5.0077 0.0044 10 6 6.7827 5.8803 0.0052 11 6 8.0650 5.3223 -0.0007 12 6 9.1730 6.1433 0.0057 13 6 9.0210 7.5181 0.0127 14 6 7.7522 8.0824 0.0127 15 8 7.6102 9.4340 0.0191 16 6 6.6319 7.2693 0.0062 17 7 3.6386 -0.6953 -0.0051 18 1 4.4192 -1.2709 -0.0102 19 7 2.2998 -1.1104 0.0005 20 6 1.8320 -2.4986 -0.0001 21 6 1.5553 -2.9349 -1.4158 22 1 1.7118 -2.2468 -2.2333 23 6 1.1023 -4.2126 -1.6674 24 7 0.8604 -4.5932 -2.9027 25 14 0.8309 -5.4027 -0.2532 26 1 -0.5631 -5.2730 0.2422 27 1 1.0616 -6.7919 -0.7242 28 1 1.7783 -5.0890 0.8464 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3632 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5136 32 1 1.9469 2.1225 -0.0004 33 1 6.7344 3.2362 0.0041 34 1 4.6072 5.4411 0.0040 35 1 8.1875 4.2492 -0.0054 36 1 10.1628 5.7114 0.0058 37 1 9.8929 8.1555 0.0182 38 1 7.5674 9.8208 0.9043 39 1 5.6446 7.7072 0.0067 40 1 2.5982 -3.1404 0.4348 41 1 0.9178 -2.5741 0.5886 42 1 0.5413 -5.4919 -3.0797 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492732559.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:21 Heat of formation + Delta-G solvation = 42.518737 kcal Electronic energy + Delta-G solvation = -25285.195179 eV Core-core repulsion = 21425.664205 eV Total energy + Delta-G solvation = -3859.530975 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.47438 -40.70270 -39.96851 -37.87581 -36.08132 -34.87287 -34.56669 -33.75859 -32.69439 -31.46402 -30.16107 -28.89946 -28.83889 -25.81732 -24.33834 -23.61336 -23.17981 -21.63178 -21.09916 -20.03265 -19.30288 -18.82650 -18.51237 -17.65741 -17.17241 -16.98353 -16.69547 -16.42510 -16.04986 -15.87806 -15.65506 -15.16782 -14.81993 -14.69650 -14.47406 -14.35074 -14.17326 -13.92259 -13.78790 -13.60372 -13.39269 -13.29874 -13.01049 -12.81353 -12.60259 -12.29176 -12.25522 -11.86218 -11.48968 -11.23981 -11.16510 -10.96201 -10.92135 -10.38547 -10.00368 -9.74437 -9.24532 -8.49076 -8.41731 -6.57455 -0.52280 0.17679 0.32486 0.48295 1.09948 1.37748 1.39275 1.47764 1.70728 2.24500 2.62428 2.75120 2.91194 3.13731 3.20147 3.47288 3.61455 3.85427 4.00475 4.13193 4.15493 4.20375 4.27028 4.38311 4.40643 4.51302 4.69135 4.75952 4.80327 4.87805 4.89663 4.94572 5.01817 5.12443 5.14676 5.27232 5.37418 5.44357 5.53802 5.67899 5.84813 5.87748 5.99269 6.10356 6.44415 6.52862 6.74968 6.85694 7.08482 7.76551 8.72840 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.032337 B = 0.001844 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.673936 B =15177.301545 C =15623.983437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.201 3.799 3 C -0.348 4.348 4 C 0.456 3.544 5 N -0.703 5.703 6 C 0.504 3.496 7 O -0.611 6.611 8 C -0.161 4.161 9 C -0.049 4.049 10 C -0.060 4.060 11 C -0.123 4.123 12 C -0.101 4.101 13 C -0.142 4.142 14 C 0.097 3.903 15 O -0.509 6.509 16 C -0.139 4.139 17 N -0.462 5.462 18 H 0.455 0.545 19 N -0.344 5.344 20 C 0.232 3.768 21 C -0.563 4.563 22 H 0.032 0.968 23 C 0.026 3.974 24 N -0.933 5.933 25 Si 0.946 3.054 26 H -0.253 1.253 27 H -0.287 1.287 28 H -0.235 1.235 29 H 0.092 0.908 30 H 0.094 0.906 31 H 0.116 0.884 32 H 0.176 0.824 33 H 0.144 0.856 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.157 0.843 37 H 0.150 0.850 38 H 0.411 0.589 39 H 0.135 0.865 40 H 0.068 0.932 41 H 0.092 0.908 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.116 16.158 11.763 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.075 3.925 3 C -0.379 4.379 4 C 0.207 3.793 5 N -0.466 5.466 6 C 0.294 3.706 7 O -0.497 6.497 8 C -0.181 4.181 9 C -0.069 4.069 10 C -0.061 4.061 11 C -0.141 4.141 12 C -0.119 4.119 13 C -0.160 4.160 14 C 0.053 3.947 15 O -0.323 6.323 16 C -0.158 4.158 17 N -0.186 5.186 18 H 0.304 0.696 19 N -0.130 5.130 20 C 0.114 3.886 21 C -0.601 4.601 22 H 0.050 0.950 23 C -0.175 4.175 24 N -0.571 5.571 25 Si 0.768 3.232 26 H -0.178 1.178 27 H -0.213 1.213 28 H -0.158 1.158 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.135 0.865 32 H 0.193 0.807 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.157 0.843 36 H 0.175 0.825 37 H 0.168 0.832 38 H 0.270 0.730 39 H 0.153 0.847 40 H 0.086 0.914 41 H 0.109 0.891 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 10.318 15.537 11.054 21.680 hybrid contribution -0.432 -0.750 0.129 0.875 sum 9.886 14.787 11.183 21.010 Atomic orbital electron populations 1.20831 0.83345 1.06018 1.05055 1.21920 0.96122 0.84463 0.90029 1.22240 0.91434 1.00497 1.23741 1.19386 0.92169 0.82696 0.85052 1.69023 1.28262 1.05461 1.43875 1.19702 0.88610 0.86469 0.75842 1.90605 1.28342 1.79561 1.51186 1.22772 0.98335 0.93213 1.03778 1.22251 0.97635 0.92957 0.94036 1.18917 0.93008 0.92688 1.01441 1.21718 0.91529 1.01365 0.99449 1.21302 0.99718 0.92755 0.98119 1.21829 0.97216 0.96023 1.00947 1.18446 0.92238 0.83354 1.00670 1.84785 1.95608 1.16340 1.35549 1.21747 0.99772 0.92562 1.01714 1.44497 0.98867 1.04884 1.70314 0.69595 1.47442 0.93351 1.07643 1.64564 1.20279 0.97828 0.72946 0.97554 1.21309 1.47806 0.99161 0.91805 0.95011 1.25792 0.93438 0.99570 0.98673 1.70024 1.44703 1.20343 1.21987 0.85753 0.80779 0.77642 0.79072 1.17759 1.21297 1.15760 0.88991 0.88733 0.86516 0.80737 0.83821 0.85993 0.84271 0.82544 0.83233 0.73010 0.84724 0.91440 0.89094 0.91717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.38 10.09 71.24 0.72 -1.66 16 2 C 0.20 6.81 6.93 41.10 0.28 7.10 16 3 C -0.35 -13.34 9.41 22.25 0.21 -13.13 16 4 C 0.46 18.13 8.07 133.93 1.08 19.21 16 5 N -0.70 -28.54 10.53 -311.83 -3.28 -31.82 16 6 C 0.50 20.24 7.67 86.61 0.66 20.90 16 7 O -0.61 -26.92 13.17 -5.31 -0.07 -26.99 16 8 C -0.16 -5.05 9.52 23.70 0.23 -4.83 16 9 C -0.05 -1.36 9.46 23.82 0.23 -1.14 16 10 C -0.06 -1.39 5.87 -20.16 -0.12 -1.51 16 11 C -0.12 -2.39 9.41 22.58 0.21 -2.18 16 12 C -0.10 -1.53 10.02 22.21 0.22 -1.31 16 13 C -0.14 -2.15 9.98 22.44 0.22 -1.93 16 14 C 0.10 1.75 6.70 22.46 0.15 1.90 16 15 O -0.51 -7.76 13.50 -92.49 -1.25 -9.01 16 16 C -0.14 -2.90 9.73 22.67 0.22 -2.68 16 17 N -0.46 -16.39 7.38 -54.78 -0.40 -16.79 16 18 H 0.45 13.83 8.96 -213.28 -1.91 11.92 16 19 N -0.34 -12.31 3.63 -337.50 -1.23 -13.53 16 20 C 0.23 8.40 5.00 85.64 0.43 8.83 16 21 C -0.56 -27.02 9.94 25.60 0.25 -26.77 16 22 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 23 C 0.03 1.29 5.47 84.66 0.46 1.75 16 24 N -0.93 -51.69 13.96 21.45 0.30 -51.39 16 25 Si 0.95 34.83 27.47 68.60 1.88 36.72 16 26 H -0.25 -8.74 7.11 99.48 0.71 -8.04 16 27 H -0.29 -11.02 7.11 99.48 0.71 -10.31 16 28 H -0.23 -7.44 6.54 99.48 0.65 -6.79 16 29 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16 30 H 0.09 2.09 7.14 -2.39 -0.02 2.08 16 31 H 0.12 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.18 7.07 5.77 -2.91 -0.02 7.05 16 33 H 0.14 3.86 6.07 -2.91 -0.02 3.85 16 34 H 0.12 3.61 7.52 -2.91 -0.02 3.58 16 35 H 0.14 2.46 6.16 -2.91 -0.02 2.44 16 36 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 37 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 38 H 0.41 2.11 9.06 -74.05 -0.67 1.44 16 39 H 0.13 2.60 8.06 -2.91 -0.02 2.58 16 40 H 0.07 2.25 7.20 -2.39 -0.02 2.24 16 41 H 0.09 2.82 6.61 -2.39 -0.02 2.80 16 42 H 0.27 14.11 8.31 -92.71 -0.77 13.34 16 Total: -1.00 -72.54 364.96 -0.13 -72.67 By element: Atomic # 1 Polarization: 39.14 SS G_CDS: -1.55 Total: 37.60 kcal Atomic # 6 Polarization: -2.91 SS G_CDS: 5.47 Total: 2.56 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -4.61 Total: -113.54 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -1.32 Total: -36.00 kcal Atomic # 14 Polarization: 34.83 SS G_CDS: 1.88 Total: 36.72 kcal Total: -72.54 -0.13 -72.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492732559.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.187 kcal (2) G-P(sol) polarization free energy of solvation -72.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds