Wall clock time and date at job start Tue Mar 31 2020 15:05:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39729 * 125.77592 * 2 1 4 4 C 1.36158 * 107.85651 * 180.15880 * 3 2 1 5 5 N 1.39343 * 126.26238 * 179.84359 * 4 3 2 6 6 C 1.34775 * 120.00205 * 359.68912 * 5 4 3 7 7 O 1.21722 * 119.99924 * 0.02562 * 6 5 4 8 8 C 1.46374 * 120.00330 * 179.97438 * 6 5 4 9 9 C 1.34834 * 120.00237 * 187.34498 * 8 6 5 10 10 C 1.47206 * 119.99727 * 10.13545 * 9 8 6 11 11 C 1.39870 * 120.15178 * 44.00464 * 10 9 8 12 12 C 1.37894 * 119.94351 * 180.27396 * 11 10 9 13 13 C 1.38332 * 120.22950 * 359.75005 * 12 11 10 14 14 C 1.38858 * 120.28946 * 359.97378 * 13 12 11 15 15 O 1.35915 * 119.96742 * 180.02562 * 14 13 12 16 16 C 1.38419 * 120.06046 * 0.02562 * 14 13 12 17 17 N 1.35810 * 107.47006 * 359.58412 * 4 3 2 18 18 C 1.46505 * 126.09256 * 180.24108 * 17 4 3 19 19 C 1.50692 * 109.47360 * 89.99979 * 18 17 4 20 20 H 1.08005 * 120.00113 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00424 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00082 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99646 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47036 * 90.00069 * 23 21 19 25 25 H 1.48500 * 109.46946 * 210.00308 * 23 21 19 26 26 H 1.48505 * 109.47031 * 330.00089 * 23 21 19 27 27 N 1.30834 * 125.77889 * 179.69054 * 2 1 3 28 28 H 1.08993 * 109.47601 * 270.27837 * 1 2 3 29 29 H 1.08998 * 109.46886 * 30.28423 * 1 2 3 30 30 H 1.09002 * 109.46821 * 150.28122 * 1 2 3 31 31 H 1.08002 * 126.06602 * 0.04519 * 3 2 1 32 32 H 0.97004 * 119.99806 * 179.69250 * 5 4 3 33 33 H 1.08007 * 119.99969 * 7.34387 * 8 6 5 34 34 H 1.07996 * 119.99748 * 190.13592 * 9 8 6 35 35 H 1.08003 * 120.02400 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.88330 * 179.72163 * 12 11 10 37 37 H 1.07997 * 119.85501 * 179.97438 * 13 12 11 38 38 H 0.96701 * 113.99792 * 270.01728 * 15 14 13 39 39 H 1.08002 * 120.11782 * 179.97438 * 16 14 13 40 40 H 1.09007 * 109.46797 * 210.00056 * 18 17 4 41 41 H 1.09003 * 109.47109 * 329.99936 * 18 17 4 42 42 H 0.96997 * 119.99865 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7147 -0.0036 5 7 4.7493 1.5302 -0.0079 6 6 4.6127 2.8710 -0.0151 7 8 3.5023 3.3696 -0.0174 8 6 5.7996 3.7276 -0.0190 9 6 5.6685 5.0620 0.1231 10 6 4.3680 5.6373 0.5035 11 6 3.6096 5.0481 1.5204 12 6 2.3894 5.5873 1.8695 13 6 1.9141 6.7129 1.2208 14 6 2.6617 7.3090 0.2138 15 8 2.1887 8.4150 -0.4188 16 6 3.8882 6.7778 -0.1462 17 7 3.6088 -0.6433 0.0036 18 6 4.7859 -1.5156 0.0080 19 6 5.1899 -1.8071 1.4301 20 1 4.6265 -1.3846 2.2490 21 6 6.2794 -2.6125 1.6861 22 7 6.6316 -2.8673 2.9272 23 14 7.2542 -3.3427 0.2699 24 1 8.3457 -2.4111 -0.1120 25 1 7.8369 -4.6429 0.6885 26 1 6.3549 -3.5547 -0.8927 27 7 2.2720 -1.0614 0.0057 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.9873 2.1599 0.0007 32 1 5.6342 1.1328 -0.0057 33 1 6.7805 3.2908 -0.1357 34 1 6.5175 5.7086 -0.0423 35 1 3.9776 4.1693 2.0290 36 1 1.8025 5.1290 2.6517 37 1 0.9575 7.1299 1.4988 38 1 1.6536 8.2222 -1.2008 39 1 4.4702 7.2404 -0.9296 40 1 4.5477 -2.4497 -0.5009 41 1 5.6076 -1.0196 -0.5088 42 1 7.3983 -3.4335 3.1073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492747958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:17 Heat of formation + Delta-G solvation = 59.432270 kcal Electronic energy + Delta-G solvation = -26976.295854 eV Core-core repulsion = 23117.498305 eV Total energy + Delta-G solvation = -3858.797549 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.97986 -39.97919 -39.04294 -36.84353 -34.79667 -33.88083 -33.68291 -32.18059 -30.50231 -29.63408 -29.28146 -28.20240 -26.32725 -24.53110 -22.64631 -22.54218 -22.05731 -20.42425 -19.73798 -19.14771 -17.88892 -17.21937 -16.99753 -16.68158 -16.41010 -15.66240 -15.37742 -15.06056 -14.82690 -14.33617 -14.24070 -13.90291 -13.81529 -13.70644 -13.20070 -12.88849 -12.74205 -12.63048 -12.42738 -12.20790 -12.06277 -11.89840 -11.84586 -11.53349 -11.16847 -10.86093 -10.61435 -10.49419 -10.25247 -10.11753 -9.95394 -9.78570 -9.56743 -8.88916 -8.79636 -8.11777 -7.95183 -7.49555 -6.35977 -4.40480 0.54009 1.34599 1.68632 2.54128 2.80058 3.04538 3.15130 3.16307 3.27275 3.62878 3.63549 3.70431 4.11868 4.17487 4.56892 4.65617 4.88212 4.90290 5.07100 5.16465 5.21418 5.27587 5.46936 5.55491 5.73684 5.78802 5.93855 5.97685 5.99185 6.02877 6.12306 6.22067 6.30537 6.34993 6.35834 6.40874 6.55182 6.63756 6.73086 6.76569 7.17816 7.42898 7.53912 7.55261 7.75458 8.16276 8.29936 8.54878 8.70228 9.18685 10.76267 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.003331 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.954535 B = 8404.942180 C = 9564.990061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.053 3.947 3 C -0.288 4.288 4 C 0.304 3.696 5 N -0.634 5.634 6 C 0.543 3.457 7 O -0.502 6.502 8 C -0.202 4.202 9 C -0.021 4.021 10 C -0.059 4.059 11 C -0.041 4.041 12 C -0.113 4.113 13 C -0.131 4.131 14 C 0.084 3.916 15 O -0.503 6.503 16 C -0.123 4.123 17 N -0.346 5.346 18 C 0.231 3.769 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.080 3.920 22 N -0.883 5.883 23 Si 0.872 3.128 24 H -0.271 1.271 25 H -0.278 1.278 26 H -0.263 1.263 27 N -0.282 5.282 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.164 0.836 32 H 0.415 0.585 33 H 0.140 0.860 34 H 0.141 0.859 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.123 0.877 38 H 0.386 0.614 39 H 0.125 0.875 40 H 0.054 0.946 41 H 0.034 0.966 42 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.749 17.933 -7.427 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.112 4.112 3 C -0.320 4.320 4 C 0.082 3.918 5 N -0.280 5.280 6 C 0.332 3.668 7 O -0.378 6.378 8 C -0.222 4.222 9 C -0.041 4.041 10 C -0.059 4.059 11 C -0.059 4.059 12 C -0.132 4.132 13 C -0.150 4.150 14 C 0.040 3.960 15 O -0.312 6.312 16 C -0.142 4.142 17 N -0.132 5.132 18 C 0.112 3.888 19 C -0.584 4.584 20 H 0.099 0.901 21 C -0.124 4.124 22 N -0.519 5.519 23 Si 0.697 3.303 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.188 1.188 27 N -0.107 5.107 28 H 0.088 0.912 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.181 0.819 32 H 0.251 0.749 33 H 0.158 0.842 34 H 0.158 0.842 35 H 0.137 0.863 36 H 0.143 0.857 37 H 0.141 0.859 38 H 0.241 0.759 39 H 0.143 0.857 40 H 0.072 0.928 41 H 0.052 0.948 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.898 17.131 -6.857 18.860 hybrid contribution 1.127 -0.342 -0.940 1.507 sum -2.771 16.789 -7.797 18.717 Atomic orbital electron populations 1.20029 0.87501 1.02327 1.02272 1.22045 0.96559 0.91023 1.01594 1.21287 0.88934 1.00469 1.21322 1.18025 0.88172 0.82982 1.02611 1.42764 1.08132 1.05739 1.71343 1.18394 0.90303 0.80939 0.77129 1.90824 1.26469 1.72919 1.47563 1.22880 0.97989 0.94068 1.07309 1.22371 0.95951 0.94225 0.91511 1.18722 0.94828 0.95071 0.97260 1.21157 0.93658 0.96278 0.94838 1.20856 0.96195 0.95734 1.00367 1.21432 0.99978 0.96077 0.97490 1.18210 0.93537 0.88435 0.95826 1.84823 1.71703 1.29152 1.45546 1.21368 0.96820 0.95329 1.00679 1.49046 1.06089 1.01978 1.56083 1.19918 0.79290 0.89995 0.99633 1.21193 1.14265 1.32619 0.90317 0.90082 1.24822 0.96630 0.95213 0.95784 1.69867 1.26802 1.36710 1.18551 0.86922 0.80759 0.79774 0.82816 1.19650 1.20344 1.18762 1.77340 0.85865 1.21826 1.25648 0.91190 0.91136 0.91543 0.81869 0.74875 0.84217 0.84187 0.86336 0.85679 0.85877 0.75856 0.85696 0.92799 0.94791 0.92009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.91 10.44 36.01 0.38 -0.53 16 2 C 0.05 1.04 7.20 -82.46 -0.59 0.44 16 3 C -0.29 -5.67 9.58 -39.77 -0.38 -6.05 16 4 C 0.30 6.15 7.68 -152.77 -1.17 4.97 16 5 N -0.63 -10.49 5.41 -12.62 -0.07 -10.56 16 6 C 0.54 7.99 6.74 -12.99 -0.09 7.90 16 7 O -0.50 -8.23 9.23 5.17 0.05 -8.19 16 8 C -0.20 -2.15 9.92 -37.52 -0.37 -2.53 16 9 C -0.02 -0.20 9.81 -37.15 -0.36 -0.57 16 10 C -0.06 -0.69 4.54 -105.08 -0.48 -1.17 16 11 C -0.04 -0.54 6.57 -39.10 -0.26 -0.79 16 12 C -0.11 -1.38 10.02 -39.67 -0.40 -1.78 16 13 C -0.13 -1.50 9.98 -39.32 -0.39 -1.89 16 14 C 0.08 0.96 6.69 -39.29 -0.26 0.70 16 15 O -0.50 -4.99 13.50 -19.47 -0.26 -5.25 16 16 C -0.12 -1.38 9.73 -38.95 -0.38 -1.76 16 17 N -0.35 -7.85 3.62 -61.45 -0.22 -8.07 16 18 C 0.23 5.36 5.09 -5.19 -0.03 5.33 16 19 C -0.55 -14.78 9.94 -34.44 -0.34 -15.12 16 20 H 0.08 2.51 8.06 -52.48 -0.42 2.09 16 21 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 22 N -0.88 -25.48 13.96 55.43 0.77 -24.71 16 23 Si 0.87 19.34 27.47 -169.99 -4.67 14.67 16 24 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.26 -5.63 6.54 56.52 0.37 -5.26 16 27 N -0.28 -6.41 12.56 33.64 0.42 -5.99 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.16 3.09 5.82 -52.49 -0.31 2.79 16 32 H 0.41 6.23 7.97 -40.82 -0.33 5.90 16 33 H 0.14 1.11 8.06 -52.48 -0.42 0.69 16 34 H 0.14 0.90 8.06 -52.49 -0.42 0.47 16 35 H 0.12 1.65 7.00 -52.48 -0.37 1.28 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.39 2.11 9.06 45.56 0.41 2.52 16 39 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.05 1.28 7.20 -51.93 -0.37 0.90 16 41 H 0.03 0.71 6.95 -51.93 -0.36 0.34 16 42 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 361.00 15.07 5.44 5.44 Total: -1.00 -34.03 361.00 -8.06 -42.09 By element: Atomic # 1 Polarization: 15.64 SS G_CDS: -4.29 Total: 11.35 kcal Atomic # 6 Polarization: -5.55 SS G_CDS: -5.23 Total: -10.78 kcal Atomic # 7 Polarization: -50.24 SS G_CDS: 0.91 Total: -49.33 kcal Atomic # 8 Polarization: -13.22 SS G_CDS: -0.22 Total: -13.44 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -4.67 Total: 14.67 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.03 -8.06 -42.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492747958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.527 kcal (2) G-P(sol) polarization free energy of solvation -34.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.432 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds