Wall clock time and date at job start Tue Mar 31 2020 15:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39729 * 125.77592 * 2 1 4 4 C 1.36158 * 107.85651 * 180.15880 * 3 2 1 5 5 N 1.39343 * 126.26238 * 179.84359 * 4 3 2 6 6 C 1.34775 * 120.00205 * 359.68912 * 5 4 3 7 7 O 1.21722 * 119.99924 * 0.02562 * 6 5 4 8 8 C 1.46374 * 120.00330 * 179.97438 * 6 5 4 9 9 C 1.34834 * 120.00237 * 187.34498 * 8 6 5 10 10 C 1.47206 * 119.99727 * 10.13545 * 9 8 6 11 11 C 1.39870 * 120.15178 * 44.00464 * 10 9 8 12 12 C 1.37894 * 119.94351 * 180.27396 * 11 10 9 13 13 C 1.38332 * 120.22950 * 359.75005 * 12 11 10 14 14 C 1.38858 * 120.28946 * 359.97378 * 13 12 11 15 15 O 1.35915 * 119.96742 * 180.02562 * 14 13 12 16 16 C 1.38419 * 120.06046 * 0.02562 * 14 13 12 17 17 N 1.35810 * 107.47006 * 359.58412 * 4 3 2 18 18 C 1.46505 * 126.09256 * 180.24108 * 17 4 3 19 19 C 1.50692 * 109.47360 * 89.99979 * 18 17 4 20 20 H 1.08005 * 120.00113 * 359.97438 * 19 18 17 21 21 C 1.37881 * 120.00424 * 180.02562 * 19 18 17 22 22 N 1.31507 * 120.00082 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 119.99646 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47036 * 90.00069 * 23 21 19 25 25 H 1.48500 * 109.46946 * 210.00308 * 23 21 19 26 26 H 1.48505 * 109.47031 * 330.00089 * 23 21 19 27 27 N 1.30834 * 125.77889 * 179.69054 * 2 1 3 28 28 H 1.08993 * 109.47601 * 270.27837 * 1 2 3 29 29 H 1.08998 * 109.46886 * 30.28423 * 1 2 3 30 30 H 1.09002 * 109.46821 * 150.28122 * 1 2 3 31 31 H 1.08002 * 126.06602 * 0.04519 * 3 2 1 32 32 H 0.97004 * 119.99806 * 179.69250 * 5 4 3 33 33 H 1.08007 * 119.99969 * 7.34387 * 8 6 5 34 34 H 1.07996 * 119.99748 * 190.13592 * 9 8 6 35 35 H 1.08003 * 120.02400 * 0.02562 * 11 10 9 36 36 H 1.08000 * 119.88330 * 179.72163 * 12 11 10 37 37 H 1.07997 * 119.85501 * 179.97438 * 13 12 11 38 38 H 0.96701 * 113.99792 * 270.01728 * 15 14 13 39 39 H 1.08002 * 120.11782 * 179.97438 * 16 14 13 40 40 H 1.09007 * 109.46797 * 210.00056 * 18 17 4 41 41 H 1.09003 * 109.47109 * 329.99936 * 18 17 4 42 42 H 0.96997 * 119.99865 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6194 0.7147 -0.0036 5 7 4.7493 1.5302 -0.0079 6 6 4.6127 2.8710 -0.0151 7 8 3.5023 3.3696 -0.0174 8 6 5.7996 3.7276 -0.0190 9 6 5.6685 5.0620 0.1231 10 6 4.3680 5.6373 0.5035 11 6 3.6096 5.0481 1.5204 12 6 2.3894 5.5873 1.8695 13 6 1.9141 6.7129 1.2208 14 6 2.6617 7.3090 0.2138 15 8 2.1887 8.4150 -0.4188 16 6 3.8882 6.7778 -0.1462 17 7 3.6088 -0.6433 0.0036 18 6 4.7859 -1.5156 0.0080 19 6 5.1899 -1.8071 1.4301 20 1 4.6265 -1.3846 2.2490 21 6 6.2794 -2.6125 1.6861 22 7 6.6316 -2.8673 2.9272 23 14 7.2542 -3.3427 0.2699 24 1 8.3457 -2.4111 -0.1120 25 1 7.8369 -4.6429 0.6885 26 1 6.3549 -3.5547 -0.8927 27 7 2.2720 -1.0614 0.0057 28 1 -0.3634 0.0050 1.0276 29 1 -0.3633 0.8874 -0.5182 30 1 -0.3633 -0.8925 -0.5095 31 1 1.9873 2.1599 0.0007 32 1 5.6342 1.1328 -0.0057 33 1 6.7805 3.2908 -0.1357 34 1 6.5175 5.7086 -0.0423 35 1 3.9776 4.1693 2.0290 36 1 1.8025 5.1290 2.6517 37 1 0.9575 7.1299 1.4988 38 1 1.6536 8.2222 -1.2008 39 1 4.4702 7.2404 -0.9296 40 1 4.5477 -2.4497 -0.5009 41 1 5.6076 -1.0196 -0.5088 42 1 7.3983 -3.4335 3.1073 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492747958.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:05:16 Heat of formation + Delta-G solvation = 35.862976 kcal Electronic energy + Delta-G solvation = -26977.317895 eV Core-core repulsion = 23117.498305 eV Total energy + Delta-G solvation = -3859.819590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.41746 -41.06780 -40.08780 -37.70642 -36.21706 -35.53971 -34.66217 -33.97398 -31.47961 -31.07622 -30.38029 -29.55403 -28.00418 -25.59101 -24.31147 -23.46483 -23.21727 -21.67113 -21.18700 -20.26104 -19.27087 -18.93107 -18.18843 -17.95595 -17.39702 -16.71720 -16.56308 -16.37779 -16.17818 -15.80314 -15.38982 -15.21095 -14.88864 -14.72122 -14.62571 -14.38853 -14.16043 -13.82467 -13.73935 -13.49963 -13.17804 -13.14843 -12.91293 -12.87916 -12.54997 -12.42534 -12.11537 -11.86823 -11.72387 -11.50212 -11.38256 -10.99086 -10.92357 -10.75716 -9.70899 -9.57240 -9.03496 -9.02118 -8.43418 -6.56105 -0.35290 0.45547 0.71550 1.11703 1.32127 1.33476 1.42645 1.48142 1.88553 2.24061 2.26261 2.37076 2.77955 2.88085 3.37504 3.64543 3.78294 3.80668 4.03033 4.20510 4.20912 4.30714 4.44092 4.47504 4.58654 4.60404 4.68097 4.86478 4.89259 4.90784 4.96680 5.00458 5.10883 5.12519 5.18995 5.20358 5.28724 5.47824 5.51425 5.67102 5.87095 5.92780 5.99716 6.24057 6.37763 6.48524 6.90013 6.96916 7.05576 7.09777 8.73104 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.014788 B = 0.003331 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1892.954535 B = 8404.942180 C = 9564.990061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.058 3.942 3 C -0.301 4.301 4 C 0.303 3.697 5 N -0.636 5.636 6 C 0.538 3.462 7 O -0.521 6.521 8 C -0.212 4.212 9 C -0.002 4.002 10 C -0.070 4.070 11 C -0.063 4.063 12 C -0.125 4.125 13 C -0.140 4.140 14 C 0.083 3.917 15 O -0.508 6.508 16 C -0.127 4.127 17 N -0.371 5.371 18 C 0.240 3.760 19 C -0.554 4.554 20 H 0.021 0.979 21 C 0.025 3.975 22 N -0.934 5.934 23 Si 0.950 3.050 24 H -0.243 1.243 25 H -0.280 1.280 26 H -0.248 1.248 27 N -0.330 5.330 28 H 0.081 0.919 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.170 0.830 32 H 0.421 0.579 33 H 0.172 0.828 34 H 0.184 0.816 35 H 0.099 0.901 36 H 0.128 0.872 37 H 0.138 0.862 38 H 0.407 0.593 39 H 0.148 0.852 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.622 19.671 -9.927 22.189 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.107 4.107 3 C -0.333 4.333 4 C 0.081 3.919 5 N -0.283 5.283 6 C 0.329 3.671 7 O -0.398 6.398 8 C -0.232 4.232 9 C -0.021 4.021 10 C -0.070 4.070 11 C -0.081 4.081 12 C -0.144 4.144 13 C -0.158 4.158 14 C 0.038 3.962 15 O -0.321 6.321 16 C -0.145 4.145 17 N -0.157 5.157 18 C 0.120 3.880 19 C -0.592 4.592 20 H 0.040 0.960 21 C -0.176 4.176 22 N -0.572 5.572 23 Si 0.771 3.229 24 H -0.167 1.167 25 H -0.205 1.205 26 H -0.172 1.172 27 N -0.155 5.155 28 H 0.100 0.900 29 H 0.114 0.886 30 H 0.094 0.906 31 H 0.187 0.813 32 H 0.258 0.742 33 H 0.189 0.811 34 H 0.201 0.799 35 H 0.118 0.882 36 H 0.146 0.854 37 H 0.156 0.844 38 H 0.265 0.735 39 H 0.165 0.835 40 H 0.068 0.932 41 H 0.084 0.916 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.786 18.911 -9.374 21.289 hybrid contribution 0.619 -0.691 -0.060 0.930 sum -2.167 18.219 -9.434 20.631 Atomic orbital electron populations 1.20217 0.84081 1.04087 1.03537 1.22871 0.98696 0.90202 0.98967 1.21477 0.89013 1.00734 1.22069 1.18425 0.89748 0.82560 1.01126 1.42992 1.07367 1.06155 1.71815 1.19227 0.91542 0.80380 0.75914 1.90807 1.27777 1.72962 1.48210 1.22969 0.97471 0.93761 1.09040 1.22797 0.96098 0.94216 0.89031 1.18999 0.95748 0.95350 0.96896 1.21134 0.94557 0.96327 0.96088 1.21001 0.96219 0.96324 1.00820 1.21617 1.00736 0.95888 0.97572 1.18358 0.93714 0.88393 0.95707 1.84769 1.72134 1.28623 1.46586 1.21619 0.96940 0.95012 1.00946 1.48962 1.05965 1.02769 1.57959 1.19713 0.80610 0.90618 0.97026 1.21221 1.14096 1.32909 0.90964 0.96046 1.25834 0.97585 0.95149 0.99000 1.70031 1.27837 1.37838 1.21522 0.85692 0.79508 0.78917 0.78803 1.16683 1.20526 1.17191 1.77271 0.86381 1.23627 1.28211 0.90029 0.88561 0.90567 0.81291 0.74187 0.81060 0.79936 0.88241 0.85382 0.84444 0.73499 0.83466 0.93238 0.91582 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.44 71.24 0.74 -0.95 16 2 C 0.06 2.30 7.20 43.07 0.31 2.61 16 3 C -0.30 -12.00 9.58 22.15 0.21 -11.79 16 4 C 0.30 12.49 7.68 131.20 1.01 13.50 16 5 N -0.64 -21.01 5.41 -312.05 -1.69 -22.70 16 6 C 0.54 15.49 6.74 86.36 0.58 16.07 16 7 O -0.52 -17.03 9.23 -4.42 -0.04 -17.08 16 8 C -0.21 -4.05 9.92 23.61 0.23 -3.81 16 9 C 0.00 -0.04 9.81 23.85 0.23 0.20 16 10 C -0.07 -1.54 4.54 -20.16 -0.09 -1.63 16 11 C -0.06 -1.65 6.57 22.58 0.15 -1.50 16 12 C -0.13 -3.09 10.02 22.21 0.22 -2.86 16 13 C -0.14 -3.07 9.98 22.44 0.22 -2.84 16 14 C 0.08 1.74 6.69 22.46 0.15 1.89 16 15 O -0.51 -8.90 13.50 -92.59 -1.25 -10.15 16 16 C -0.13 -2.55 9.73 22.68 0.22 -2.32 16 17 N -0.37 -17.19 3.62 -348.33 -1.26 -18.45 16 18 C 0.24 11.22 5.09 85.63 0.44 11.65 16 19 C -0.55 -31.12 9.94 25.60 0.25 -30.87 16 20 H 0.02 1.41 8.06 -2.91 -0.02 1.39 16 21 C 0.02 1.35 5.47 84.66 0.46 1.81 16 22 N -0.93 -55.61 13.96 21.45 0.30 -55.31 16 23 Si 0.95 39.28 27.47 68.60 1.88 41.16 16 24 H -0.24 -8.97 7.11 99.48 0.71 -8.26 16 25 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.25 -9.62 6.54 99.48 0.65 -8.97 16 27 N -0.33 -15.42 12.56 -47.47 -0.60 -16.01 16 28 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 30 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.17 6.48 5.82 -2.91 -0.02 6.46 16 32 H 0.42 12.40 7.97 -92.71 -0.74 11.66 16 33 H 0.17 2.14 8.06 -2.91 -0.02 2.12 16 34 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 35 H 0.10 2.91 7.00 -2.91 -0.02 2.89 16 36 H 0.13 2.89 8.06 -2.91 -0.02 2.87 16 37 H 0.14 2.50 8.06 -2.91 -0.02 2.47 16 38 H 0.41 3.42 9.06 -74.06 -0.67 2.75 16 39 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 40 H 0.05 2.34 7.20 -2.38 -0.02 2.32 16 41 H 0.07 2.64 6.95 -2.39 -0.02 2.62 16 42 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -78.24 361.00 2.31 -75.93 By element: Atomic # 1 Polarization: 33.85 SS G_CDS: -0.39 Total: 33.47 kcal Atomic # 6 Polarization: -16.21 SS G_CDS: 5.35 Total: -10.86 kcal Atomic # 7 Polarization: -109.22 SS G_CDS: -3.25 Total: -112.47 kcal Atomic # 8 Polarization: -25.94 SS G_CDS: -1.29 Total: -27.23 kcal Atomic # 14 Polarization: 39.28 SS G_CDS: 1.88 Total: 41.16 kcal Total: -78.24 2.31 -75.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492747958.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.789 kcal (2) G-P(sol) polarization free energy of solvation -78.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds