Wall clock time and date at job start Tue Mar 31 2020 15:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34978 * 126.06645 * 2 1 4 4 H 0.97000 * 125.97303 * 359.95125 * 3 2 1 5 5 N 1.40075 * 108.05353 * 179.97438 * 3 2 1 6 6 C 1.31237 * 108.16707 * 0.02562 * 5 3 2 7 7 N 1.40053 * 125.97760 * 180.02562 * 6 5 3 8 8 C 1.34785 * 119.99869 * 0.02562 * 7 6 5 9 9 O 1.21734 * 119.99838 * 0.02562 * 8 7 6 10 10 C 1.46217 * 119.99860 * 180.02562 * 8 7 6 11 11 C 1.35035 * 119.99718 * 180.02562 * 10 8 7 12 12 C 1.46958 * 120.00037 * 179.72342 * 11 10 8 13 13 C 1.40029 * 120.10119 * 359.71725 * 12 11 10 14 14 C 1.37600 * 119.89855 * 179.72044 * 13 12 11 15 15 C 1.39173 * 120.10015 * 0.56004 * 14 13 12 16 16 O 1.35567 * 119.89963 * 179.74113 * 15 14 13 17 17 C 1.34779 * 117.00017 * 174.41998 * 16 15 14 18 18 H 1.07995 * 120.00372 * 5.05837 * 17 16 15 19 19 C 1.38725 * 119.99821 * 185.04994 * 17 16 15 20 20 N 1.31513 * 120.00019 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99983 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46796 * 90.00687 * 21 19 17 23 23 H 1.48489 * 109.47282 * 210.00383 * 21 19 17 24 24 H 1.48496 * 109.47249 * 330.00984 * 21 19 17 25 25 C 1.39182 * 120.20505 * 359.71551 * 15 14 13 26 26 C 1.37596 * 120.10034 * 0.02562 * 25 15 14 27 27 C 1.35231 * 126.06926 * 180.28967 * 2 1 3 28 28 C 1.50696 * 126.06757 * 0.03085 * 27 2 1 29 29 H 1.08996 * 109.47460 * 90.02601 * 1 2 3 30 30 H 1.09006 * 109.46867 * 210.02316 * 1 2 3 31 31 H 1.08998 * 109.47152 * 330.01868 * 1 2 3 32 32 H 0.97004 * 120.00266 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.00349 * 359.72036 * 10 8 7 34 34 H 1.07999 * 120.00599 * 359.71706 * 11 10 8 35 35 H 1.08001 * 120.04755 * 359.97438 * 13 12 11 36 36 H 1.08000 * 119.94704 * 180.25370 * 14 13 12 37 37 H 0.96999 * 119.99952 * 179.97438 * 20 19 17 38 38 H 1.07995 * 119.94868 * 179.97438 * 25 15 14 39 39 H 1.08001 * 120.05118 * 180.02562 * 26 25 15 40 40 H 1.09004 * 109.47626 * 270.20416 * 28 27 2 41 41 H 1.09000 * 109.47311 * 30.21025 * 28 27 2 42 42 H 1.09002 * 109.47065 * 150.20824 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3016 1.0911 0.0000 4 1 2.0025 2.0138 -0.0007 5 7 3.6337 0.6579 0.0006 6 6 3.6372 -0.6544 0.0004 7 7 4.7728 -1.4742 0.0013 8 6 6.0024 -0.9221 0.0031 9 8 6.1259 0.2889 0.0044 10 6 7.1880 -1.7779 0.0035 11 6 8.4198 -1.2248 0.0058 12 6 9.6114 -2.0849 0.0124 13 6 9.4719 -3.4782 0.0222 14 6 10.5904 -4.2795 0.0225 15 6 11.8591 -3.7073 0.0248 16 8 12.9583 -4.5007 0.0304 17 6 14.1543 -3.8899 -0.0844 18 1 14.2114 -2.8115 -0.0931 19 6 15.3121 -4.6467 -0.1912 20 7 15.2426 -5.9599 -0.1810 21 14 16.9697 -3.8003 -0.3511 22 1 17.5408 -3.5712 1.0004 23 1 17.8902 -4.6592 -1.1383 24 1 16.7957 -2.4975 -1.0422 25 6 12.0027 -2.3229 0.0209 26 6 10.8899 -1.5136 0.0152 27 6 2.3031 -1.0931 -0.0055 28 6 1.8409 -2.5274 -0.0134 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 4.6744 -2.4392 0.0007 33 1 7.0784 -2.8524 0.0070 34 1 8.5295 -0.1504 0.0027 35 1 8.4878 -3.9231 0.0254 36 1 10.4837 -5.3542 0.0260 37 1 16.0521 -6.4890 -0.2561 38 1 12.9891 -1.8832 0.0231 39 1 11.0023 -0.4395 0.0117 40 1 1.7254 -2.8777 1.0123 41 1 0.8844 -2.5980 -0.5313 42 1 2.5785 -3.1440 -0.5270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492906327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:42 Heat of formation + Delta-G solvation = 51.016060 kcal Electronic energy + Delta-G solvation = -25092.506901 eV Core-core repulsion = 21233.344398 eV Total energy + Delta-G solvation = -3859.162503 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.63027 -39.48671 -39.09182 -36.91460 -35.00719 -33.28686 -33.11687 -32.32652 -31.45532 -30.43420 -28.62261 -28.05929 -25.88612 -25.71788 -24.14289 -22.29784 -21.69821 -20.29709 -19.98479 -19.08759 -18.21294 -17.55955 -17.13205 -16.68935 -16.23886 -15.71964 -14.95153 -14.80713 -14.55392 -14.43475 -14.18417 -14.02311 -13.83136 -13.47273 -13.27680 -13.23500 -13.04457 -12.97060 -12.65535 -12.59761 -12.16734 -11.94959 -11.79494 -11.73397 -11.14807 -11.08686 -11.01907 -10.75358 -10.65536 -10.53974 -9.75436 -9.61533 -9.50032 -8.89364 -8.77264 -8.38684 -8.36651 -7.12533 -6.65933 -4.20589 1.00732 1.66566 2.13446 2.32335 2.40893 2.77895 3.04042 3.05392 3.09693 3.23221 3.65919 3.81903 4.33606 4.50442 4.60880 4.68192 4.91723 4.93112 5.03001 5.03535 5.08192 5.25714 5.34881 5.41771 5.45045 5.51946 5.53932 5.60799 5.66140 5.86050 5.96922 6.00639 6.10531 6.39195 6.45945 6.58222 6.70745 6.78264 6.89253 6.98721 7.12409 7.21516 7.23808 7.28820 7.63282 7.76930 7.79455 8.29576 8.78841 9.45620 10.50579 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.042504 B = 0.001695 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.609204 B =16517.966850 C =17147.841787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.098 3.902 3 N -0.477 5.477 4 H 0.439 0.561 5 N -0.273 5.273 6 C 0.308 3.692 7 N -0.640 5.640 8 C 0.549 3.451 9 O -0.511 6.511 10 C -0.283 4.283 11 C 0.045 3.955 12 C -0.200 4.200 13 C -0.042 4.042 14 C -0.200 4.200 15 C 0.167 3.833 16 O -0.162 6.162 17 C -0.393 4.393 18 H 0.098 0.902 19 C 0.042 3.958 20 N -0.851 5.851 21 Si 0.945 3.055 22 H -0.271 1.271 23 H -0.275 1.275 24 H -0.265 1.265 25 C -0.242 4.242 26 C -0.033 4.033 27 C -0.261 4.261 28 C -0.071 4.071 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.071 0.929 32 H 0.418 0.582 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.119 0.881 36 H 0.121 0.879 37 H 0.274 0.726 38 H 0.131 0.869 39 H 0.114 0.886 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.534 7.111 0.156 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.031 4.031 3 N -0.187 5.187 4 H 0.283 0.717 5 N -0.102 5.102 6 C 0.051 3.949 7 N -0.290 5.290 8 C 0.341 3.659 9 O -0.385 6.385 10 C -0.304 4.304 11 C 0.025 3.975 12 C -0.201 4.201 13 C -0.060 4.060 14 C -0.219 4.219 15 C 0.111 3.889 16 O -0.062 6.062 17 C -0.469 4.469 18 H 0.115 0.885 19 C -0.164 4.164 20 N -0.484 5.484 21 Si 0.769 3.231 22 H -0.196 1.196 23 H -0.200 1.200 24 H -0.189 1.189 25 C -0.262 4.262 26 C -0.052 4.052 27 C -0.274 4.274 28 C -0.129 4.129 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.090 0.910 32 H 0.256 0.744 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.139 0.861 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.132 0.868 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -24.394 8.494 0.158 25.831 hybrid contribution 0.188 -0.313 -0.067 0.371 sum -24.207 8.181 0.091 25.552 Atomic orbital electron populations 1.20467 0.87193 1.03980 1.03446 1.20756 0.94411 0.87175 1.00795 1.46131 1.03777 1.07987 1.60830 0.71677 1.78051 0.94345 1.09627 1.28212 1.19148 0.86886 0.89833 0.99078 1.42937 1.02773 1.09307 1.74027 1.18652 0.82925 0.88544 0.75828 1.90877 1.85825 1.14494 1.47278 1.22275 0.91354 0.99405 1.17397 1.22300 0.91094 0.99168 0.84905 1.18440 0.92117 0.92868 1.16715 1.20889 0.97268 0.92307 0.95530 1.20151 0.89808 0.99831 1.12089 1.19621 0.88177 0.89876 0.91250 1.83900 1.12428 1.34380 1.75529 1.21487 0.80548 0.92782 1.52060 0.88507 1.25400 0.99483 0.95580 0.95980 1.70014 1.30045 1.04486 1.43838 0.85642 0.79615 0.78953 0.78899 1.19627 1.20038 1.18939 1.21101 0.99387 0.93272 1.12409 1.20996 0.91365 0.98617 0.94198 1.19470 0.90092 0.96592 1.21263 1.20035 1.01015 0.90269 1.01608 0.90059 0.89505 0.90966 0.74450 0.85525 0.85832 0.86321 0.86083 0.91581 0.85103 0.86775 0.92017 0.91758 0.92066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.37 10.03 36.00 0.36 -0.01 16 2 C 0.10 0.83 7.20 -82.28 -0.59 0.23 16 3 N -0.48 -4.86 7.35 33.46 0.25 -4.62 16 4 H 0.44 3.03 8.96 -182.62 -1.64 1.39 16 5 N -0.27 -4.10 10.92 31.42 0.34 -3.76 16 6 C 0.31 4.11 7.78 -154.47 -1.20 2.91 16 7 N -0.64 -7.86 5.44 -12.45 -0.07 -7.93 16 8 C 0.55 8.35 7.70 -13.05 -0.10 8.25 16 9 O -0.51 -9.75 14.95 5.16 0.08 -9.68 16 10 C -0.28 -3.91 9.41 -37.52 -0.35 -4.26 16 11 C 0.05 0.69 9.45 -37.19 -0.35 0.34 16 12 C -0.20 -3.41 5.87 -105.02 -0.62 -4.02 16 13 C -0.04 -0.70 9.40 -39.14 -0.37 -1.07 16 14 C -0.20 -3.95 9.97 -39.47 -0.39 -4.35 16 15 C 0.17 3.83 6.66 -38.88 -0.26 3.57 16 16 O -0.16 -4.37 9.74 0.75 0.01 -4.36 16 17 C -0.39 -10.43 9.48 30.91 0.29 -10.13 16 18 H 0.10 2.36 5.18 -52.49 -0.27 2.09 16 19 C 0.04 1.09 5.49 -17.51 -0.10 1.00 16 20 N -0.85 -23.73 13.67 55.48 0.76 -22.98 16 21 Si 0.94 19.49 29.55 -169.99 -5.02 14.47 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 24 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 25 C -0.24 -5.01 9.14 -39.47 -0.36 -5.37 16 26 C -0.03 -0.60 9.78 -39.14 -0.38 -0.98 16 27 C -0.26 -2.58 6.12 -104.87 -0.64 -3.23 16 28 C -0.07 -0.46 9.82 36.00 0.35 -0.11 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.09 0.26 7.79 -51.93 -0.40 -0.14 16 31 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.42 3.56 8.19 -40.82 -0.33 3.23 16 33 H 0.13 1.43 6.07 -52.49 -0.32 1.11 16 34 H 0.12 1.90 7.52 -52.49 -0.39 1.51 16 35 H 0.12 1.60 6.16 -52.49 -0.32 1.27 16 36 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 37 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.13 2.68 5.62 -52.49 -0.29 2.38 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.06 0.32 7.79 -51.93 -0.40 -0.09 16 42 H 0.06 0.36 7.70 -51.93 -0.40 -0.04 16 LS Contribution 366.08 15.07 5.52 5.52 Total: -1.00 -34.72 366.08 -8.88 -43.61 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -6.03 Total: 6.94 kcal Atomic # 6 Polarization: -12.51 SS G_CDS: -4.71 Total: -17.22 kcal Atomic # 7 Polarization: -40.56 SS G_CDS: 1.28 Total: -39.28 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: 0.08 Total: -14.04 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.47 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -34.72 -8.88 -43.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492906327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.624 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds