Wall clock time and date at job start Tue Mar 31 2020 15:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 N 1.34978 * 126.06645 * 2 1 4 4 H 0.97000 * 125.97303 * 359.95125 * 3 2 1 5 5 N 1.40075 * 108.05353 * 179.97438 * 3 2 1 6 6 C 1.31237 * 108.16707 * 0.02562 * 5 3 2 7 7 N 1.40053 * 125.97760 * 180.02562 * 6 5 3 8 8 C 1.34785 * 119.99869 * 0.02562 * 7 6 5 9 9 O 1.21734 * 119.99838 * 0.02562 * 8 7 6 10 10 C 1.46217 * 119.99860 * 180.02562 * 8 7 6 11 11 C 1.35035 * 119.99718 * 180.02562 * 10 8 7 12 12 C 1.46958 * 120.00037 * 179.72342 * 11 10 8 13 13 C 1.40029 * 120.10119 * 359.71725 * 12 11 10 14 14 C 1.37600 * 119.89855 * 179.72044 * 13 12 11 15 15 C 1.39173 * 120.10015 * 0.56004 * 14 13 12 16 16 O 1.35567 * 119.89963 * 179.74113 * 15 14 13 17 17 C 1.34779 * 117.00017 * 174.41998 * 16 15 14 18 18 H 1.07995 * 120.00372 * 5.05837 * 17 16 15 19 19 C 1.38725 * 119.99821 * 185.04994 * 17 16 15 20 20 N 1.31513 * 120.00019 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99983 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46796 * 90.00687 * 21 19 17 23 23 H 1.48489 * 109.47282 * 210.00383 * 21 19 17 24 24 H 1.48496 * 109.47249 * 330.00984 * 21 19 17 25 25 C 1.39182 * 120.20505 * 359.71551 * 15 14 13 26 26 C 1.37596 * 120.10034 * 0.02562 * 25 15 14 27 27 C 1.35231 * 126.06926 * 180.28967 * 2 1 3 28 28 C 1.50696 * 126.06757 * 0.03085 * 27 2 1 29 29 H 1.08996 * 109.47460 * 90.02601 * 1 2 3 30 30 H 1.09006 * 109.46867 * 210.02316 * 1 2 3 31 31 H 1.08998 * 109.47152 * 330.01868 * 1 2 3 32 32 H 0.97004 * 120.00266 * 180.02562 * 7 6 5 33 33 H 1.08002 * 120.00349 * 359.72036 * 10 8 7 34 34 H 1.07999 * 120.00599 * 359.71706 * 11 10 8 35 35 H 1.08001 * 120.04755 * 359.97438 * 13 12 11 36 36 H 1.08000 * 119.94704 * 180.25370 * 14 13 12 37 37 H 0.96999 * 119.99952 * 179.97438 * 20 19 17 38 38 H 1.07995 * 119.94868 * 179.97438 * 25 15 14 39 39 H 1.08001 * 120.05118 * 180.02562 * 26 25 15 40 40 H 1.09004 * 109.47626 * 270.20416 * 28 27 2 41 41 H 1.09000 * 109.47311 * 30.21025 * 28 27 2 42 42 H 1.09002 * 109.47065 * 150.20824 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.3016 1.0911 0.0000 4 1 2.0025 2.0138 -0.0007 5 7 3.6337 0.6579 0.0006 6 6 3.6372 -0.6544 0.0004 7 7 4.7728 -1.4742 0.0013 8 6 6.0024 -0.9221 0.0031 9 8 6.1259 0.2889 0.0044 10 6 7.1880 -1.7779 0.0035 11 6 8.4198 -1.2248 0.0058 12 6 9.6114 -2.0849 0.0124 13 6 9.4719 -3.4782 0.0222 14 6 10.5904 -4.2795 0.0225 15 6 11.8591 -3.7073 0.0248 16 8 12.9583 -4.5007 0.0304 17 6 14.1543 -3.8899 -0.0844 18 1 14.2114 -2.8115 -0.0931 19 6 15.3121 -4.6467 -0.1912 20 7 15.2426 -5.9599 -0.1810 21 14 16.9697 -3.8003 -0.3511 22 1 17.5408 -3.5712 1.0004 23 1 17.8902 -4.6592 -1.1383 24 1 16.7957 -2.4975 -1.0422 25 6 12.0027 -2.3229 0.0209 26 6 10.8899 -1.5136 0.0152 27 6 2.3031 -1.0931 -0.0055 28 6 1.8409 -2.5274 -0.0134 29 1 -0.3634 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8901 0.5135 32 1 4.6744 -2.4392 0.0007 33 1 7.0784 -2.8524 0.0070 34 1 8.5295 -0.1504 0.0027 35 1 8.4878 -3.9231 0.0254 36 1 10.4837 -5.3542 0.0260 37 1 16.0521 -6.4890 -0.2561 38 1 12.9891 -1.8832 0.0231 39 1 11.0023 -0.4395 0.0117 40 1 1.7254 -2.8777 1.0123 41 1 0.8844 -2.5980 -0.5313 42 1 2.5785 -3.1440 -0.5270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492906327.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:41 Heat of formation + Delta-G solvation = 28.129981 kcal Electronic energy + Delta-G solvation = -25093.499316 eV Core-core repulsion = 21233.344398 eV Total energy + Delta-G solvation = -3860.154918 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.45141 -40.89909 -40.48760 -38.50896 -36.06945 -34.76391 -34.03714 -33.78266 -32.28622 -31.95888 -29.78739 -28.92025 -27.53193 -26.49366 -25.40897 -23.80103 -23.01905 -21.27908 -21.19736 -20.24809 -19.65607 -18.86324 -18.51665 -17.73405 -17.25691 -16.59280 -16.45900 -16.37119 -15.97422 -15.62988 -15.53782 -15.44059 -14.90280 -14.66585 -14.59021 -14.10926 -13.85801 -13.67287 -13.60798 -13.52638 -13.31959 -13.18942 -12.97488 -12.71231 -12.70373 -12.56229 -12.22956 -12.13135 -11.98899 -11.63362 -11.21564 -11.12350 -10.93106 -10.58417 -9.88775 -9.67864 -9.15796 -8.68549 -8.52213 -6.18229 -0.31280 0.59299 0.86486 1.10530 1.36041 1.44624 1.52938 1.57540 1.72867 2.15374 2.40424 2.46575 2.86377 3.17840 3.42468 3.63589 3.75143 3.93328 4.08143 4.10866 4.23248 4.30125 4.33439 4.41817 4.48440 4.65001 4.79416 4.86043 4.94602 4.94915 5.00708 5.02165 5.15953 5.19592 5.23523 5.27882 5.32182 5.38474 5.56978 5.63919 5.79126 5.80263 5.97400 6.10207 6.13657 6.53726 6.83412 6.92185 7.21601 7.68998 8.69669 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.042504 B = 0.001695 C = 0.001632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 658.609204 B =16517.966850 C =17147.841787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.108 3.892 3 N -0.474 5.474 4 H 0.449 0.551 5 N -0.334 5.334 6 C 0.283 3.717 7 N -0.625 5.625 8 C 0.543 3.457 9 O -0.553 6.553 10 C -0.243 4.243 11 C 0.024 3.976 12 C -0.172 4.172 13 C -0.035 4.035 14 C -0.206 4.206 15 C 0.131 3.869 16 O -0.218 6.218 17 C -0.418 4.418 18 H 0.105 0.895 19 C -0.017 4.017 20 N -0.912 5.912 21 Si 1.018 2.982 22 H -0.263 1.263 23 H -0.271 1.271 24 H -0.254 1.254 25 C -0.250 4.250 26 C -0.040 4.040 27 C -0.273 4.273 28 C -0.070 4.070 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.088 0.912 32 H 0.436 0.564 33 H 0.162 0.838 34 H 0.123 0.877 35 H 0.164 0.836 36 H 0.125 0.875 37 H 0.275 0.725 38 H 0.124 0.876 39 H 0.143 0.857 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.724 8.145 0.073 30.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.022 4.022 3 N -0.186 5.186 4 H 0.296 0.704 5 N -0.165 5.165 6 C 0.026 3.974 7 N -0.276 5.276 8 C 0.335 3.665 9 O -0.430 6.430 10 C -0.263 4.263 11 C 0.004 3.996 12 C -0.173 4.173 13 C -0.052 4.052 14 C -0.225 4.225 15 C 0.079 3.921 16 O -0.123 6.123 17 C -0.494 4.494 18 H 0.122 0.878 19 C -0.216 4.216 20 N -0.549 5.549 21 Si 0.837 3.163 22 H -0.188 1.188 23 H -0.195 1.195 24 H -0.177 1.177 25 C -0.269 4.269 26 C -0.058 4.058 27 C -0.286 4.286 28 C -0.128 4.128 29 H 0.115 0.885 30 H 0.121 0.879 31 H 0.106 0.894 32 H 0.277 0.723 33 H 0.180 0.820 34 H 0.140 0.860 35 H 0.182 0.818 36 H 0.143 0.857 37 H 0.084 0.916 38 H 0.142 0.858 39 H 0.160 0.840 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.680 9.543 0.079 30.226 hybrid contribution 0.748 -0.357 -0.029 0.829 sum -27.932 9.186 0.051 29.404 Atomic orbital electron populations 1.20651 0.83667 1.05590 1.04883 1.21515 0.96349 0.86067 0.98257 1.46142 1.02741 1.09198 1.60514 0.70441 1.77893 0.97307 1.11108 1.30181 1.19532 0.88162 0.89849 0.99891 1.42744 1.01961 1.10242 1.72627 1.18906 0.84108 0.88082 0.75449 1.90873 1.86596 1.16413 1.49077 1.22586 0.90205 1.00879 1.12659 1.22175 0.90897 0.99023 0.87501 1.18731 0.92406 0.93282 1.12862 1.21319 0.98224 0.91963 0.93726 1.20437 0.89606 1.00658 1.11818 1.20210 0.88529 0.90914 0.92494 1.83882 1.13275 1.35694 1.79486 1.21898 0.81224 0.93382 1.52847 0.87756 1.26593 1.03278 0.96232 0.95506 1.70145 1.31008 1.06237 1.47507 0.84591 0.74413 0.78087 0.79199 1.18773 1.19517 1.17713 1.21192 1.00224 0.92852 1.12636 1.21311 0.90900 0.99918 0.93640 1.19920 0.88684 0.98711 1.21301 1.20128 1.02055 0.88077 1.02517 0.88506 0.87926 0.89354 0.72319 0.82039 0.85953 0.81847 0.85695 0.91580 0.85812 0.83975 0.91204 0.89839 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.35 10.03 71.23 0.71 0.36 16 2 C 0.11 1.52 7.20 41.38 0.30 1.82 16 3 N -0.47 -8.95 7.35 -48.04 -0.35 -9.30 16 4 H 0.45 5.63 8.96 -213.34 -1.91 3.72 16 5 N -0.33 -9.80 10.92 -54.49 -0.59 -10.39 16 6 C 0.28 7.02 7.78 133.36 1.04 8.06 16 7 N -0.62 -13.68 5.44 -311.50 -1.69 -15.38 16 8 C 0.54 15.17 7.70 86.31 0.66 15.84 16 9 O -0.55 -20.54 14.95 -4.46 -0.07 -20.60 16 10 C -0.24 -5.69 9.41 23.61 0.22 -5.47 16 11 C 0.02 0.65 9.45 23.82 0.23 0.88 16 12 C -0.17 -5.36 5.87 -20.12 -0.12 -5.48 16 13 C -0.03 -1.06 9.40 22.55 0.21 -0.85 16 14 C -0.21 -8.10 9.97 22.34 0.22 -7.88 16 15 C 0.13 6.21 6.66 22.72 0.15 6.36 16 16 O -0.22 -12.62 9.74 -20.21 -0.20 -12.82 16 17 C -0.42 -23.53 9.48 67.94 0.64 -22.89 16 18 H 0.11 5.39 5.18 -2.91 -0.02 5.37 16 19 C -0.02 -0.94 5.49 84.86 0.47 -0.48 16 20 N -0.91 -54.18 13.67 21.62 0.30 -53.88 16 21 Si 1.02 41.59 29.55 68.60 2.03 43.62 16 22 H -0.26 -10.23 7.11 99.48 0.71 -9.53 16 23 H -0.27 -10.64 7.11 99.48 0.71 -9.94 16 24 H -0.25 -9.67 7.11 99.48 0.71 -8.97 16 25 C -0.25 -10.53 9.14 22.34 0.20 -10.32 16 26 C -0.04 -1.36 9.78 22.55 0.22 -1.14 16 27 C -0.27 -4.66 6.12 -20.02 -0.12 -4.78 16 28 C -0.07 -0.64 9.82 71.23 0.70 0.06 16 29 H 0.10 0.17 8.14 -2.39 -0.02 0.15 16 30 H 0.10 0.15 7.79 -2.38 -0.02 0.13 16 31 H 0.09 0.11 8.14 -2.39 -0.02 0.09 16 32 H 0.44 5.82 8.19 -92.71 -0.76 5.06 16 33 H 0.16 2.64 6.07 -2.91 -0.02 2.62 16 34 H 0.12 3.49 7.52 -2.91 -0.02 3.47 16 35 H 0.16 3.49 6.16 -2.91 -0.02 3.47 16 36 H 0.13 4.73 8.06 -2.91 -0.02 4.70 16 37 H 0.28 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.12 5.29 5.62 -2.91 -0.02 5.27 16 39 H 0.14 4.03 8.06 -2.91 -0.02 4.00 16 40 H 0.07 0.54 8.14 -2.38 -0.02 0.52 16 41 H 0.08 0.45 7.79 -2.39 -0.02 0.43 16 42 H 0.07 0.53 7.70 -2.39 -0.02 0.51 16 Total: -1.00 -83.00 366.08 3.59 -79.41 By element: Atomic # 1 Polarization: 26.83 SS G_CDS: -1.57 Total: 25.26 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 5.74 Total: -25.92 kcal Atomic # 7 Polarization: -86.61 SS G_CDS: -2.35 Total: -88.95 kcal Atomic # 8 Polarization: -33.16 SS G_CDS: -0.26 Total: -33.42 kcal Atomic # 14 Polarization: 41.59 SS G_CDS: 2.03 Total: 43.62 kcal Total: -83.00 3.59 -79.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492906327.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.544 kcal (2) G-P(sol) polarization free energy of solvation -83.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds