Wall clock time and date at job start Tue Mar 31 2020 15:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34972 * 126.06420 * 2 1 4 4 H 0.97006 * 125.97418 * 359.97438 * 3 2 1 5 5 N 1.40068 * 108.05121 * 179.97438 * 3 2 1 6 6 C 1.31237 * 108.16687 * 359.97438 * 5 3 2 7 7 N 1.40064 * 125.97432 * 179.97438 * 6 5 3 8 8 C 1.34779 * 119.99853 * 0.03088 * 7 6 5 9 9 O 1.21731 * 120.00210 * 359.97438 * 8 7 6 10 10 C 1.46218 * 119.99409 * 179.97438 * 8 7 6 11 11 C 1.35044 * 119.99909 * 173.14418 * 10 8 7 12 12 C 1.46963 * 119.99841 * 346.79762 * 11 10 8 13 13 C 1.40023 * 120.10054 * 135.34846 * 12 11 10 14 14 C 1.37591 * 119.89542 * 179.97438 * 13 12 11 15 15 C 1.39180 * 120.10512 * 0.27271 * 14 13 12 16 16 O 1.35568 * 119.90155 * 179.70050 * 15 14 13 17 17 C 1.34783 * 116.99835 * 7.26195 * 16 15 14 18 18 H 1.08003 * 119.99974 * 6.22653 * 17 16 15 19 19 C 1.38713 * 119.99905 * 186.23676 * 17 16 15 20 20 N 1.31512 * 120.00003 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00307 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47010 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47406 * 119.99685 * 21 19 17 24 24 H 1.48496 * 109.47591 * 240.00002 * 21 19 17 25 25 C 1.39175 * 120.19898 * 359.44895 * 15 14 13 26 26 C 1.37605 * 120.10209 * 0.55196 * 25 15 14 27 27 C 1.35224 * 126.06623 * 180.27659 * 2 1 3 28 28 C 1.50700 * 126.07074 * 0.02582 * 27 2 1 29 29 H 1.08997 * 109.47125 * 90.02705 * 1 2 3 30 30 H 1.09005 * 109.47171 * 210.02244 * 1 2 3 31 31 H 1.08993 * 109.47414 * 330.02538 * 1 2 3 32 32 H 0.97000 * 119.99762 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.00503 * 353.15084 * 10 8 7 34 34 H 1.07996 * 120.00241 * 166.79019 * 11 10 8 35 35 H 1.08007 * 120.05263 * 359.95005 * 13 12 11 36 36 H 1.08004 * 119.94961 * 179.97438 * 14 13 12 37 37 H 0.97003 * 119.99469 * 180.02562 * 20 19 17 38 38 H 1.08005 * 119.95209 * 180.27406 * 25 15 14 39 39 H 1.07995 * 120.05170 * 179.74610 * 26 25 15 40 40 H 1.09001 * 109.47077 * 270.15674 * 28 27 2 41 41 H 1.08997 * 109.47236 * 30.15090 * 28 27 2 42 42 H 1.09003 * 109.47256 * 150.16071 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3016 1.0911 0.0000 4 1 2.0025 2.0138 -0.0004 5 7 3.6336 0.6579 0.0006 6 6 3.6371 -0.6544 0.0015 7 7 4.7729 -1.4742 0.0018 8 6 6.0024 -0.9221 0.0018 9 8 6.1259 0.2890 0.0010 10 6 7.1879 -1.7779 0.0027 11 6 8.4151 -1.2317 -0.1370 12 6 8.5525 0.1639 -0.5764 13 6 9.4535 1.0184 0.0707 14 6 9.5792 2.3241 -0.3445 15 6 8.8083 2.7976 -1.4022 16 8 8.9310 4.0866 -1.8040 17 6 9.9185 4.8114 -1.2416 18 1 10.6300 4.3353 -0.5831 19 6 10.0207 6.1688 -1.5084 20 7 9.1545 6.7483 -2.3104 21 14 11.3887 7.1736 -0.7284 22 1 12.2238 6.2927 0.1272 23 1 12.2318 7.7731 -1.7938 24 1 10.7980 8.2537 0.1019 25 6 7.9156 1.9504 -2.0521 26 6 7.7832 0.6430 -1.6437 27 6 2.3031 -1.0931 -0.0053 28 6 1.8409 -2.5274 -0.0127 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 4.6745 -2.4392 0.0021 33 1 7.0823 -2.8469 0.1149 34 1 9.2954 -1.8204 0.0744 35 1 10.0487 0.6532 0.8947 36 1 10.2736 2.9841 0.1542 37 1 9.2263 7.6975 -2.4972 38 1 7.3226 2.3208 -2.8753 39 1 7.0873 -0.0126 -2.1460 40 1 1.7264 -2.8776 1.0131 41 1 0.8838 -2.5980 -0.5296 42 1 2.5781 -3.1441 -0.5270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492906328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:47 Heat of formation + Delta-G solvation = 67.859426 kcal Electronic energy + Delta-G solvation = -26525.700631 eV Core-core repulsion = 22667.268511 eV Total energy + Delta-G solvation = -3858.432120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.44814 -39.57237 -38.64200 -36.52887 -34.74129 -33.12351 -32.93491 -32.12436 -31.28951 -30.08158 -28.41055 -27.87776 -25.72155 -25.44150 -24.05215 -21.89693 -21.51238 -20.16748 -20.10713 -18.83774 -17.91249 -17.49072 -16.83321 -16.52477 -16.03721 -15.54251 -14.73970 -14.55170 -14.42142 -14.22681 -14.00402 -13.66135 -13.51435 -13.31272 -13.14531 -13.06194 -12.97440 -12.80212 -12.54012 -12.51881 -12.17779 -12.01906 -11.66218 -11.36251 -11.01425 -10.79932 -10.68331 -10.56492 -10.42546 -10.35714 -9.47697 -9.38551 -9.12909 -8.68737 -8.58894 -8.21046 -7.90447 -6.84823 -6.43317 -3.98819 1.21315 1.86593 2.43193 2.60188 2.60961 2.84884 3.15434 3.16406 3.21608 3.40649 3.77616 3.99325 4.49888 4.71618 4.77467 4.81990 5.05064 5.14826 5.17073 5.20454 5.23491 5.37247 5.47538 5.50424 5.56247 5.60224 5.66172 5.77065 5.88348 5.99474 6.10825 6.28301 6.33400 6.43852 6.61455 6.80862 6.89129 7.06253 7.15348 7.16801 7.38890 7.42254 7.48321 7.53698 7.95332 7.97229 8.03461 8.53230 9.02458 9.75423 10.74752 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.002861 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.335481 B = 9785.815524 C =11248.945758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.096 3.904 3 N -0.474 5.474 4 H 0.440 0.560 5 N -0.262 5.262 6 C 0.305 3.695 7 N -0.643 5.643 8 C 0.529 3.471 9 O -0.462 6.462 10 C -0.266 4.266 11 C 0.033 3.967 12 C -0.188 4.188 13 C -0.041 4.041 14 C -0.247 4.247 15 C 0.172 3.828 16 O -0.173 6.173 17 C -0.388 4.388 18 H 0.094 0.906 19 C 0.038 3.962 20 N -0.860 5.860 21 Si 0.942 3.058 22 H -0.266 1.266 23 H -0.276 1.276 24 H -0.276 1.276 25 C -0.196 4.196 26 C 0.004 3.996 27 C -0.265 4.265 28 C -0.068 4.068 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.413 0.587 33 H 0.125 0.875 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.126 0.874 37 H 0.270 0.730 38 H 0.113 0.887 39 H 0.100 0.900 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.798 -19.671 5.173 24.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.033 4.033 3 N -0.184 5.184 4 H 0.285 0.715 5 N -0.092 5.092 6 C 0.047 3.953 7 N -0.295 5.295 8 C 0.318 3.682 9 O -0.331 6.331 10 C -0.287 4.287 11 C 0.014 3.986 12 C -0.189 4.189 13 C -0.060 4.060 14 C -0.266 4.266 15 C 0.117 3.883 16 O -0.076 6.076 17 C -0.464 4.464 18 H 0.111 0.889 19 C -0.166 4.166 20 N -0.494 5.494 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.216 4.216 26 C -0.015 4.015 27 C -0.278 4.278 28 C -0.126 4.126 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.249 0.751 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.124 0.876 36 H 0.144 0.856 37 H 0.080 0.920 38 H 0.131 0.869 39 H 0.118 0.882 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.047 -17.359 4.910 22.263 hybrid contribution -0.109 -0.255 0.534 0.601 sum -13.156 -17.614 5.444 22.648 Atomic orbital electron populations 1.20455 0.87356 1.03847 1.03380 1.20746 0.94351 0.87271 1.00958 1.46197 1.03818 1.08073 1.60332 0.71550 1.78187 0.94185 1.09449 1.27343 1.19154 0.86776 0.89912 0.99464 1.43075 1.02916 1.08940 1.74584 1.18739 0.82794 0.89173 0.77498 1.91098 1.84669 1.13636 1.43680 1.22476 0.92260 0.98916 1.15039 1.22358 0.95849 0.93854 0.86581 1.18301 1.04562 0.93531 1.02544 1.20733 0.95200 0.93141 0.96901 1.20964 1.06748 0.96776 1.02114 1.19541 0.92227 0.85599 0.90958 1.83933 1.48712 1.17134 1.57772 1.21430 1.05075 0.90813 1.29108 0.88908 1.25333 0.98609 0.95887 0.96809 1.70041 1.34624 1.11684 1.33064 0.85635 0.79472 0.79493 0.78769 1.19026 1.20111 1.20144 1.20000 1.03999 0.93205 1.04373 1.20441 0.93131 0.93936 0.93986 1.19413 0.90184 0.96368 1.21861 1.19996 1.00843 0.90468 1.01310 0.90124 0.89674 0.90978 0.75085 0.85750 0.85760 0.87557 0.85644 0.92039 0.86887 0.88150 0.92277 0.91898 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.03 36.01 0.36 -0.17 16 2 C 0.10 1.00 7.20 -82.28 -0.59 0.41 16 3 N -0.47 -6.16 7.35 33.46 0.25 -5.91 16 4 H 0.44 4.54 8.96 -182.62 -1.64 2.90 16 5 N -0.26 -4.64 10.92 31.43 0.34 -4.30 16 6 C 0.30 4.54 7.78 -154.46 -1.20 3.34 16 7 N -0.64 -8.41 5.44 -12.45 -0.07 -8.48 16 8 C 0.53 8.51 6.78 -13.06 -0.09 8.42 16 9 O -0.46 -9.79 11.20 5.16 0.06 -9.73 16 10 C -0.27 -3.41 9.88 -37.51 -0.37 -3.78 16 11 C 0.03 0.47 9.79 -37.18 -0.36 0.11 16 12 C -0.19 -3.59 4.43 -105.03 -0.47 -4.05 16 13 C -0.04 -0.83 9.78 -39.15 -0.38 -1.21 16 14 C -0.25 -5.81 9.10 -39.47 -0.36 -6.17 16 15 C 0.17 4.51 6.65 -38.88 -0.26 4.25 16 16 O -0.17 -5.22 9.74 0.74 0.01 -5.22 16 17 C -0.39 -11.28 9.41 30.91 0.29 -10.99 16 18 H 0.09 2.50 5.33 -52.48 -0.28 2.22 16 19 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 20 N -0.86 -25.95 13.67 55.48 0.76 -25.19 16 21 Si 0.94 21.10 29.55 -169.99 -5.02 16.08 16 22 H -0.27 -5.71 7.11 56.52 0.40 -5.30 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 C -0.20 -4.71 9.97 -39.46 -0.39 -5.11 16 26 C 0.00 0.08 6.74 -39.14 -0.26 -0.19 16 27 C -0.26 -3.00 6.12 -104.87 -0.64 -3.64 16 28 C -0.07 -0.50 9.82 36.01 0.35 -0.14 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.38 7.79 -51.93 -0.40 -0.02 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.41 3.60 8.20 -40.82 -0.33 3.26 16 33 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.91 16 35 H 0.11 1.78 8.06 -52.48 -0.42 1.35 16 36 H 0.13 2.92 5.74 -52.48 -0.30 2.62 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.11 2.67 8.06 -52.48 -0.42 2.25 16 39 H 0.10 1.94 7.24 -52.49 -0.38 1.56 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.37 7.78 -51.93 -0.40 -0.04 16 42 H 0.06 0.37 7.70 -51.93 -0.40 -0.03 16 LS Contribution 361.87 15.07 5.45 5.45 Total: -1.00 -38.31 361.87 -8.93 -47.24 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -6.24 Total: 7.98 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -4.47 Total: -17.94 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 1.28 Total: -43.87 kcal Atomic # 8 Polarization: -15.01 SS G_CDS: 0.07 Total: -14.95 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -38.31 -8.93 -47.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492906328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.103 kcal (2) G-P(sol) polarization free energy of solvation -38.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds