Wall clock time and date at job start Tue Mar 31 2020 15:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.34972 * 126.06420 * 2 1 4 4 H 0.97006 * 125.97418 * 359.97438 * 3 2 1 5 5 N 1.40068 * 108.05121 * 179.97438 * 3 2 1 6 6 C 1.31237 * 108.16687 * 359.97438 * 5 3 2 7 7 N 1.40064 * 125.97432 * 179.97438 * 6 5 3 8 8 C 1.34779 * 119.99853 * 0.03088 * 7 6 5 9 9 O 1.21731 * 120.00210 * 359.97438 * 8 7 6 10 10 C 1.46218 * 119.99409 * 179.97438 * 8 7 6 11 11 C 1.35044 * 119.99909 * 173.14418 * 10 8 7 12 12 C 1.46963 * 119.99841 * 346.79762 * 11 10 8 13 13 C 1.40023 * 120.10054 * 135.34846 * 12 11 10 14 14 C 1.37591 * 119.89542 * 179.97438 * 13 12 11 15 15 C 1.39180 * 120.10512 * 0.27271 * 14 13 12 16 16 O 1.35568 * 119.90155 * 179.70050 * 15 14 13 17 17 C 1.34783 * 116.99835 * 7.26195 * 16 15 14 18 18 H 1.08003 * 119.99974 * 6.22653 * 17 16 15 19 19 C 1.38713 * 119.99905 * 186.23676 * 17 16 15 20 20 N 1.31512 * 120.00003 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00307 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.47010 * 359.97438 * 21 19 17 23 23 H 1.48494 * 109.47406 * 119.99685 * 21 19 17 24 24 H 1.48496 * 109.47591 * 240.00002 * 21 19 17 25 25 C 1.39175 * 120.19898 * 359.44895 * 15 14 13 26 26 C 1.37605 * 120.10209 * 0.55196 * 25 15 14 27 27 C 1.35224 * 126.06623 * 180.27659 * 2 1 3 28 28 C 1.50700 * 126.07074 * 0.02582 * 27 2 1 29 29 H 1.08997 * 109.47125 * 90.02705 * 1 2 3 30 30 H 1.09005 * 109.47171 * 210.02244 * 1 2 3 31 31 H 1.08993 * 109.47414 * 330.02538 * 1 2 3 32 32 H 0.97000 * 119.99762 * 180.02562 * 7 6 5 33 33 H 1.08005 * 120.00503 * 353.15084 * 10 8 7 34 34 H 1.07996 * 120.00241 * 166.79019 * 11 10 8 35 35 H 1.08007 * 120.05263 * 359.95005 * 13 12 11 36 36 H 1.08004 * 119.94961 * 179.97438 * 14 13 12 37 37 H 0.97003 * 119.99469 * 180.02562 * 20 19 17 38 38 H 1.08005 * 119.95209 * 180.27406 * 25 15 14 39 39 H 1.07995 * 120.05170 * 179.74610 * 26 25 15 40 40 H 1.09001 * 109.47077 * 270.15674 * 28 27 2 41 41 H 1.08997 * 109.47236 * 30.15090 * 28 27 2 42 42 H 1.09003 * 109.47256 * 150.16071 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3016 1.0911 0.0000 4 1 2.0025 2.0138 -0.0004 5 7 3.6336 0.6579 0.0006 6 6 3.6371 -0.6544 0.0015 7 7 4.7729 -1.4742 0.0018 8 6 6.0024 -0.9221 0.0018 9 8 6.1259 0.2890 0.0010 10 6 7.1879 -1.7779 0.0027 11 6 8.4151 -1.2317 -0.1370 12 6 8.5525 0.1639 -0.5764 13 6 9.4535 1.0184 0.0707 14 6 9.5792 2.3241 -0.3445 15 6 8.8083 2.7976 -1.4022 16 8 8.9310 4.0866 -1.8040 17 6 9.9185 4.8114 -1.2416 18 1 10.6300 4.3353 -0.5831 19 6 10.0207 6.1688 -1.5084 20 7 9.1545 6.7483 -2.3104 21 14 11.3887 7.1736 -0.7284 22 1 12.2238 6.2927 0.1272 23 1 12.2318 7.7731 -1.7938 24 1 10.7980 8.2537 0.1019 25 6 7.9156 1.9504 -2.0521 26 6 7.7832 0.6430 -1.6437 27 6 2.3031 -1.0931 -0.0053 28 6 1.8409 -2.5274 -0.0127 29 1 -0.3633 -0.0005 -1.0276 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 4.6745 -2.4392 0.0021 33 1 7.0823 -2.8469 0.1149 34 1 9.2954 -1.8204 0.0744 35 1 10.0487 0.6532 0.8947 36 1 10.2736 2.9841 0.1542 37 1 9.2263 7.6975 -2.4972 38 1 7.3226 2.3208 -2.8753 39 1 7.0873 -0.0126 -2.1460 40 1 1.7264 -2.8776 1.0131 41 1 0.8838 -2.5980 -0.5296 42 1 2.5781 -3.1441 -0.5270 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492906328.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:31:46 Heat of formation + Delta-G solvation = 40.260323 kcal Electronic energy + Delta-G solvation = -26526.897418 eV Core-core repulsion = 22667.268511 eV Total energy + Delta-G solvation = -3859.628907 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -42.42582 -41.02585 -40.32954 -38.25864 -35.95895 -34.63258 -33.98352 -33.76445 -32.25201 -31.85276 -29.69794 -28.93168 -27.46708 -26.47070 -25.36033 -23.62870 -23.06181 -21.44119 -21.17648 -20.05052 -19.72297 -18.92507 -18.33216 -17.68711 -17.18855 -16.57888 -16.41608 -16.27770 -15.89727 -15.64653 -15.55359 -15.04261 -14.70163 -14.63707 -14.47519 -14.29959 -13.87697 -13.77793 -13.65730 -13.57343 -13.50641 -13.06756 -12.99288 -12.70601 -12.66010 -12.36013 -12.26044 -12.10733 -11.89113 -11.49920 -11.30662 -10.94231 -10.66366 -10.39064 -9.75928 -9.57783 -9.10542 -8.60102 -8.51175 -6.18333 -0.06718 0.67236 0.92663 1.08740 1.31474 1.42173 1.51353 1.64353 1.74647 2.15214 2.46846 2.59210 2.84216 3.18892 3.47714 3.74287 3.83394 4.01567 4.08920 4.13859 4.22157 4.27123 4.43539 4.51653 4.58879 4.74615 4.76552 4.88664 4.95551 5.01003 5.02595 5.06644 5.12468 5.22080 5.22533 5.28111 5.40137 5.42470 5.64039 5.69719 5.79021 5.88140 5.99605 6.20698 6.25197 6.52784 6.92869 6.93593 7.39744 7.75487 8.72963 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.015088 B = 0.002861 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1855.335481 B = 9785.815524 C =11248.945758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.102 3.898 3 N -0.481 5.481 4 H 0.445 0.555 5 N -0.339 5.339 6 C 0.284 3.716 7 N -0.625 5.625 8 C 0.514 3.486 9 O -0.523 6.523 10 C -0.226 4.226 11 C 0.012 3.988 12 C -0.157 4.157 13 C -0.047 4.047 14 C -0.255 4.255 15 C 0.127 3.873 16 O -0.233 6.233 17 C -0.414 4.414 18 H 0.103 0.897 19 C -0.026 4.026 20 N -0.922 5.922 21 Si 1.024 2.976 22 H -0.249 1.249 23 H -0.264 1.264 24 H -0.268 1.268 25 C -0.218 4.218 26 C 0.005 3.995 27 C -0.272 4.272 28 C -0.066 4.066 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.435 0.565 33 H 0.186 0.814 34 H 0.178 0.822 35 H 0.151 0.849 36 H 0.120 0.880 37 H 0.273 0.727 38 H 0.095 0.905 39 H 0.115 0.885 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.332 -24.708 7.335 29.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.027 4.027 3 N -0.192 5.192 4 H 0.290 0.710 5 N -0.169 5.169 6 C 0.027 3.973 7 N -0.278 5.278 8 C 0.305 3.695 9 O -0.397 6.397 10 C -0.246 4.246 11 C -0.007 4.007 12 C -0.158 4.158 13 C -0.065 4.065 14 C -0.274 4.274 15 C 0.076 3.924 16 O -0.139 6.139 17 C -0.490 4.490 18 H 0.120 0.880 19 C -0.223 4.223 20 N -0.560 5.560 21 Si 0.842 3.158 22 H -0.172 1.172 23 H -0.189 1.189 24 H -0.193 1.193 25 C -0.237 4.237 26 C -0.014 4.014 27 C -0.285 4.285 28 C -0.124 4.124 29 H 0.113 0.887 30 H 0.125 0.875 31 H 0.102 0.898 32 H 0.275 0.725 33 H 0.203 0.797 34 H 0.195 0.805 35 H 0.169 0.831 36 H 0.138 0.862 37 H 0.082 0.918 38 H 0.114 0.886 39 H 0.133 0.867 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.623 -22.529 7.085 27.265 hybrid contribution -0.292 0.815 -0.056 0.868 sum -13.915 -21.715 7.029 26.731 Atomic orbital electron populations 1.20637 0.83756 1.05513 1.04760 1.21587 0.96390 0.86151 0.98621 1.46214 1.03048 1.09189 1.60762 0.70993 1.78037 0.97133 1.11687 1.30037 1.19603 0.88520 0.89670 0.99518 1.42915 1.01929 1.09934 1.73051 1.19557 0.84517 0.88938 0.76493 1.91105 1.85722 1.16431 1.46420 1.22987 0.89852 1.01135 1.10674 1.22654 0.98543 0.91101 0.88373 1.18906 1.01011 0.96136 0.99739 1.21205 0.95913 0.91588 0.97803 1.21111 1.06282 0.98538 1.01451 1.19993 0.94346 0.85018 0.93030 1.83894 1.50569 1.19052 1.60392 1.21925 1.05817 0.91601 1.29644 0.88008 1.26723 1.01637 0.96736 0.97208 1.70197 1.37690 1.12235 1.35900 0.84471 0.75806 0.77458 0.78046 1.17246 1.18916 1.19348 1.20153 1.04188 0.94852 1.04514 1.20636 0.93432 0.92604 0.94701 1.19930 0.88572 0.98676 1.21323 1.20111 1.01988 0.87708 1.02547 0.88689 0.87528 0.89788 0.72463 0.79684 0.80454 0.83129 0.86181 0.91758 0.88629 0.86726 0.91047 0.90021 0.91221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.77 10.03 71.24 0.71 -0.06 16 2 C 0.10 1.98 7.20 41.38 0.30 2.28 16 3 N -0.48 -12.81 7.35 -48.04 -0.35 -13.16 16 4 H 0.44 9.82 8.96 -213.33 -1.91 7.91 16 5 N -0.34 -12.41 10.92 -54.49 -0.59 -13.01 16 6 C 0.28 8.24 7.78 133.36 1.04 9.28 16 7 N -0.63 -14.76 5.44 -311.51 -1.69 -16.46 16 8 C 0.51 15.29 6.78 86.32 0.59 15.87 16 9 O -0.52 -22.24 11.20 -4.45 -0.05 -22.29 16 10 C -0.23 -4.51 9.88 23.61 0.23 -4.27 16 11 C 0.01 0.28 9.79 23.82 0.23 0.52 16 12 C -0.16 -5.67 4.43 -20.13 -0.09 -5.76 16 13 C -0.05 -1.83 9.78 22.55 0.22 -1.61 16 14 C -0.25 -12.48 9.10 22.34 0.20 -12.28 16 15 C 0.13 7.22 6.65 22.72 0.15 7.37 16 16 O -0.23 -15.44 9.74 -20.26 -0.20 -15.64 16 17 C -0.41 -25.90 9.41 67.93 0.64 -25.26 16 18 H 0.10 5.85 5.33 -2.91 -0.02 5.84 16 19 C -0.03 -1.56 5.49 84.85 0.47 -1.10 16 20 N -0.92 -59.88 13.67 21.62 0.30 -59.58 16 21 Si 1.02 45.20 29.55 68.60 2.03 47.22 16 22 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.26 -11.04 7.11 99.48 0.71 -10.34 16 24 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 25 C -0.22 -11.28 9.97 22.35 0.22 -11.06 16 26 C 0.00 0.19 6.74 22.55 0.15 0.34 16 27 C -0.27 -5.61 6.12 -20.03 -0.12 -5.73 16 28 C -0.07 -0.71 9.82 71.24 0.70 -0.01 16 29 H 0.09 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.11 0.52 7.79 -2.38 -0.02 0.50 16 31 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.43 5.75 8.20 -92.71 -0.76 4.99 16 33 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 34 H 0.18 2.41 8.06 -2.91 -0.02 2.38 16 35 H 0.15 4.46 8.06 -2.91 -0.02 4.44 16 36 H 0.12 5.87 5.74 -2.91 -0.02 5.86 16 37 H 0.27 16.11 8.31 -92.71 -0.77 15.34 16 38 H 0.10 5.07 8.06 -2.91 -0.02 5.05 16 39 H 0.11 4.42 7.24 -2.91 -0.02 4.40 16 40 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 41 H 0.08 0.59 7.78 -2.39 -0.02 0.57 16 42 H 0.07 0.60 7.70 -2.39 -0.02 0.58 16 Total: -1.00 -97.13 361.87 3.49 -93.64 By element: Atomic # 1 Polarization: 32.32 SS G_CDS: -1.58 Total: 30.74 kcal Atomic # 6 Polarization: -37.11 SS G_CDS: 5.64 Total: -31.47 kcal Atomic # 7 Polarization: -99.86 SS G_CDS: -2.35 Total: -102.21 kcal Atomic # 8 Polarization: -37.68 SS G_CDS: -0.25 Total: -37.92 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -97.13 3.49 -93.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492906328.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.897 kcal (2) G-P(sol) polarization free energy of solvation -97.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.637 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds