Wall clock time and date at job start Tue Mar 31 2020 15:04:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21232 * 119.99829 * 2 1 4 4 C 1.47372 * 120.00418 * 179.97438 * 2 1 3 5 5 C 1.39815 * 120.02973 * 174.48446 * 4 2 1 6 6 C 1.37756 * 119.97499 * 179.97438 * 5 4 2 7 7 C 1.39592 * 120.02572 * 0.25302 * 6 5 4 8 8 C 1.48016 * 119.97262 * 179.72709 * 7 6 5 9 9 O 1.21543 * 119.99911 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00205 * 180.02562 * 8 7 6 11 11 C 1.39338 * 120.00381 * 179.97438 * 10 8 7 12 12 C 1.36164 * 126.26447 * 359.68910 * 11 10 8 13 13 C 1.39728 * 107.86118 * 179.85007 * 12 11 10 14 14 C 1.50702 * 125.77814 * 180.16509 * 13 12 11 15 15 N 1.30840 * 108.44384 * 0.41919 * 13 12 11 16 16 N 1.35820 * 126.27012 * 180.02562 * 11 10 8 17 17 C 1.46505 * 126.09089 * 359.97438 * 16 11 10 18 18 C 1.50703 * 109.47031 * 90.00069 * 17 16 11 19 19 H 1.07999 * 119.99928 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99740 * 179.97438 * 18 17 16 21 21 N 1.31510 * 120.00028 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99703 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47274 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47133 * 120.00149 * 22 20 18 25 25 H 1.48499 * 109.46978 * 240.00355 * 22 20 18 26 26 C 1.39595 * 120.05492 * 359.49472 * 7 6 5 27 27 C 1.37758 * 120.02368 * 0.50740 * 26 7 6 28 28 H 1.09009 * 109.46888 * 185.09410 * 1 2 3 29 29 H 1.09003 * 109.46893 * 305.08436 * 1 2 3 30 30 H 1.08999 * 109.47312 * 65.09235 * 1 2 3 31 31 H 1.08004 * 120.01454 * 359.96142 * 5 4 2 32 32 H 1.08010 * 119.98590 * 179.97438 * 6 5 4 33 33 H 0.96998 * 119.99377 * 359.97438 * 10 8 7 34 34 H 1.08000 * 126.06827 * 359.95910 * 12 11 10 35 35 H 1.08999 * 109.46813 * 270.27218 * 14 13 12 36 36 H 1.08993 * 109.46921 * 30.27355 * 14 13 12 37 37 H 1.08996 * 109.46819 * 150.27299 * 14 13 12 38 38 H 1.09000 * 109.47009 * 210.00222 * 17 16 11 39 39 H 1.09004 * 109.46595 * 330.00122 * 17 16 11 40 40 H 0.96998 * 119.99453 * 180.02562 * 21 20 18 41 41 H 1.07996 * 119.98842 * 180.23293 * 26 7 6 42 42 H 1.08001 * 120.01292 * 179.72995 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1131 1.0499 0.0000 4 6 2.2439 -1.2762 0.0006 5 6 3.6372 -1.2797 -0.1158 6 6 4.3250 -2.4733 -0.1146 7 6 3.6310 -3.6793 -0.0026 8 6 4.3707 -4.9613 -0.0075 9 8 5.5819 -4.9637 -0.1086 10 7 3.7011 -6.1261 0.1001 11 6 4.3974 -7.3330 0.0949 12 6 5.7459 -7.4845 -0.0176 13 6 6.0285 -8.8522 0.0250 14 6 7.3995 -9.4717 -0.0628 15 7 4.9010 -9.5043 0.1484 16 7 3.8547 -8.5741 0.1947 17 6 2.4291 -8.8845 0.3279 18 6 1.8216 -9.0528 -1.0409 19 1 2.4360 -8.9402 -1.9219 20 6 0.4817 -9.3515 -1.1684 21 7 -0.2664 -9.4891 -0.0956 22 14 -0.2712 -9.5608 -2.8651 23 1 0.7746 -9.3560 -3.8995 24 1 -0.8324 -10.9298 -2.9922 25 1 -1.3543 -8.5624 -3.0526 26 6 2.2403 -3.6769 0.1189 27 6 1.5503 -2.4846 0.1179 28 1 -0.3633 -1.0237 0.0913 29 1 -0.3633 0.5907 0.8410 30 1 -0.3634 0.4328 -0.9321 31 1 4.1741 -0.3470 -0.2068 32 1 5.4013 -2.4762 -0.2049 33 1 2.7345 -6.1241 0.1811 34 1 6.4688 -6.6886 -0.1196 35 1 7.6439 -9.6666 -1.1070 36 1 8.1349 -8.7880 0.3610 37 1 7.4111 -10.4086 0.4941 38 1 2.3098 -9.8080 0.8945 39 1 1.9273 -8.0701 0.8506 40 1 -1.2090 -9.6996 -0.1853 41 1 1.7048 -4.6104 0.2093 42 1 0.4740 -2.4832 0.2076 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000518354285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:50 Heat of formation + Delta-G solvation = 32.339372 kcal Electronic energy + Delta-G solvation = -26464.293545 eV Core-core repulsion = 22604.321160 eV Total energy + Delta-G solvation = -3859.972385 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.06570 -40.33296 -39.39339 -37.92644 -34.92871 -33.85485 -32.55299 -32.14700 -31.44357 -29.84465 -29.15271 -28.21734 -26.08779 -25.09637 -23.03824 -22.79782 -21.88135 -20.23481 -19.91307 -19.43301 -17.86161 -16.96203 -16.75975 -16.55808 -15.84629 -15.47850 -15.41336 -15.22358 -14.95762 -14.52167 -14.29303 -14.19870 -14.09243 -13.83217 -13.03197 -12.94562 -12.81454 -12.76848 -12.55429 -12.51008 -12.41048 -12.08851 -11.82889 -11.62921 -11.40373 -11.11818 -10.96274 -10.48661 -10.40181 -10.18952 -10.02432 -9.84487 -9.62205 -9.38352 -9.36485 -8.78324 -7.96685 -7.51331 -6.39256 -4.47867 -0.00513 1.01658 1.74867 2.42848 2.67200 3.03798 3.10489 3.20080 3.26018 3.45304 3.62383 3.68880 3.70756 4.19381 4.35771 4.39108 4.54739 4.68075 4.92880 4.94112 4.98943 5.04406 5.09355 5.30510 5.36965 5.49876 5.57368 5.65143 5.84826 5.94533 5.97368 6.01187 6.10746 6.12172 6.22422 6.34151 6.42587 6.60618 6.76857 6.98433 7.11768 7.43223 7.50403 7.55698 7.73488 7.81351 8.16714 8.55699 8.65120 9.20183 10.67772 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.009305 B = 0.003703 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.386184 B = 7559.062071 C =10101.331208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.396 3.604 3 O -0.457 6.457 4 C -0.152 4.152 5 C -0.070 4.070 6 C -0.070 4.070 7 C -0.094 4.094 8 C 0.560 3.440 9 O -0.506 6.506 10 N -0.631 5.631 11 C 0.298 3.702 12 C -0.290 4.290 13 C 0.050 3.950 14 C -0.062 4.062 15 N -0.281 5.281 16 N -0.345 5.345 17 C 0.256 3.744 18 C -0.541 4.541 19 H 0.066 0.934 20 C 0.068 3.932 21 N -0.889 5.889 22 Si 0.905 3.095 23 H -0.271 1.271 24 H -0.279 1.279 25 H -0.280 1.280 26 C -0.097 4.097 27 C -0.079 4.079 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.097 0.903 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.416 0.584 34 H 0.162 0.838 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.043 0.957 40 H 0.268 0.732 41 H 0.139 0.861 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.385 15.117 1.593 15.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C 0.274 3.726 3 O -0.332 6.332 4 C -0.153 4.153 5 C -0.089 4.089 6 C -0.089 4.089 7 C -0.097 4.097 8 C 0.347 3.653 9 O -0.381 6.381 10 N -0.278 5.278 11 C 0.076 3.924 12 C -0.322 4.322 13 C -0.115 4.115 14 C -0.121 4.121 15 N -0.106 5.106 16 N -0.131 5.131 17 C 0.139 3.861 18 C -0.579 4.579 19 H 0.084 0.916 20 C -0.136 4.136 21 N -0.527 5.527 22 Si 0.732 3.268 23 H -0.195 1.195 24 H -0.205 1.205 25 H -0.206 1.206 26 C -0.115 4.115 27 C -0.097 4.097 28 H 0.106 0.894 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.254 0.746 34 H 0.179 0.821 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.085 0.915 38 H 0.076 0.924 39 H 0.061 0.939 40 H 0.078 0.922 41 H 0.157 0.843 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.647 14.479 1.706 14.817 hybrid contribution -1.061 0.399 -0.923 1.462 sum 1.586 14.878 0.783 14.982 Atomic orbital electron populations 1.22266 0.93402 1.05234 1.05144 1.22605 0.91840 0.87431 0.70683 1.90539 1.72142 1.34290 1.36267 1.20739 0.94800 0.95015 1.04728 1.21391 0.93010 0.98637 0.95814 1.21266 1.01306 0.90230 0.96071 1.20057 0.93830 0.93197 1.02608 1.18157 0.87188 0.82883 0.77079 1.90715 1.13282 1.86613 1.47479 1.42594 1.11385 1.03057 1.70794 1.17978 0.90839 0.80388 1.03187 1.21284 0.92969 0.96879 1.21077 1.22028 0.95009 0.92577 1.01849 1.20027 0.89791 1.00141 1.02166 1.77346 0.93767 1.14175 1.25361 1.49519 1.08445 1.00386 1.54777 1.19635 0.69006 0.98676 0.98816 1.21393 0.94377 1.50378 0.91784 0.91610 1.24929 0.96631 0.94338 0.97724 1.69924 1.07253 1.47142 1.28381 0.86316 0.79047 0.78154 0.83310 1.19535 1.20487 1.20605 1.21450 0.93009 0.99245 0.97822 1.21472 1.00589 0.90889 0.96701 0.89440 0.88676 0.88430 0.84149 0.83651 0.74623 0.82055 0.91271 0.91106 0.91510 0.92446 0.93908 0.92185 0.84310 0.83880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.14 10.19 36.00 0.37 -0.77 16 2 C 0.40 3.62 7.22 -30.59 -0.22 3.40 16 3 O -0.46 -5.62 17.09 5.60 0.10 -5.52 16 4 C -0.15 -1.44 5.87 -105.00 -0.62 -2.05 16 5 C -0.07 -0.71 9.58 -39.17 -0.38 -1.09 16 6 C -0.07 -0.78 9.58 -39.25 -0.38 -1.15 16 7 C -0.09 -1.16 5.88 -104.88 -0.62 -1.77 16 8 C 0.56 8.82 7.74 -12.25 -0.09 8.72 16 9 O -0.51 -9.06 13.46 5.33 0.07 -8.99 16 10 N -0.63 -10.81 5.36 -12.16 -0.07 -10.88 16 11 C 0.30 6.17 7.68 -152.77 -1.17 5.00 16 12 C -0.29 -5.86 9.58 -39.77 -0.38 -6.24 16 13 C 0.05 1.00 7.20 -82.46 -0.59 0.40 16 14 C -0.06 -0.91 10.44 36.01 0.38 -0.54 16 15 N -0.28 -6.45 12.56 33.64 0.42 -6.03 16 16 N -0.35 -7.94 3.62 -61.45 -0.22 -8.17 16 17 C 0.26 6.23 6.02 -5.19 -0.03 6.20 16 18 C -0.54 -14.15 9.39 -34.44 -0.32 -14.47 16 19 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 20 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -23.52 13.29 55.43 0.74 -22.78 16 22 Si 0.90 20.11 29.54 -169.99 -5.02 15.09 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 C -0.10 -1.00 9.52 -39.25 -0.37 -1.38 16 27 C -0.08 -0.67 9.43 -39.16 -0.37 -1.04 16 28 H 0.09 0.35 5.62 -51.92 -0.29 0.06 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.14 1.29 7.65 -52.48 -0.40 0.89 16 32 H 0.15 1.55 7.64 -52.48 -0.40 1.14 16 33 H 0.42 6.45 6.01 -40.82 -0.25 6.20 16 34 H 0.16 3.15 5.83 -52.49 -0.31 2.84 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.04 0.99 7.52 -51.93 -0.39 0.60 16 40 H 0.27 6.69 8.31 -40.82 -0.34 6.35 16 41 H 0.14 1.33 6.38 -52.49 -0.34 1.00 16 42 H 0.14 0.81 5.93 -52.49 -0.31 0.50 16 LS Contribution 364.58 15.07 5.49 5.49 Total: -1.00 -32.31 364.58 -8.15 -40.46 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -4.76 Total: 6.47 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -4.90 Total: -5.15 kcal Atomic # 7 Polarization: -48.73 SS G_CDS: 0.87 Total: -47.85 kcal Atomic # 8 Polarization: -14.68 SS G_CDS: 0.17 Total: -14.51 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.02 Total: 15.09 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.31 -8.15 -40.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000518354285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.803 kcal (2) G-P(sol) polarization free energy of solvation -32.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds