Wall clock time and date at job start Tue Mar 31 2020 15:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39731 * 125.77839 * 2 1 4 4 C 1.36140 * 107.86027 * 180.14835 * 3 2 1 5 5 N 1.39379 * 126.26239 * 179.90408 * 4 3 2 6 6 C 1.34773 * 120.00266 * 359.68652 * 5 4 3 7 7 O 1.21573 * 119.99906 * 359.97438 * 6 5 4 8 8 C 1.47804 * 119.99942 * 179.72284 * 6 5 4 9 9 C 1.39619 * 120.13627 * 0.02562 * 8 6 5 10 10 C 1.37997 * 119.88984 * 179.75620 * 9 8 6 11 11 C 1.38146 * 120.10906 * 0.48062 * 10 9 8 12 12 C 1.38750 * 120.27837 * 359.79314 * 11 10 9 13 13 C 1.37699 * 120.18830 * 359.96474 * 12 11 10 14 14 C 1.51115 * 107.25448 * 179.97438 * 12 11 10 15 15 O 1.43922 * 105.95493 * 17.72230 * 14 12 11 16 16 C 1.43924 * 104.97291 * 331.48019 * 15 14 12 17 17 N 1.35809 * 107.47133 * 359.63678 * 4 3 2 18 18 C 1.46506 * 126.09255 * 180.21039 * 17 4 3 19 19 C 1.50703 * 109.47085 * 89.99904 * 18 17 4 20 20 H 1.07999 * 120.00191 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99843 * 179.97438 * 19 18 17 22 22 N 1.31507 * 119.99789 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99802 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47068 * 90.00565 * 23 21 19 25 25 H 1.48502 * 109.47099 * 210.00359 * 23 21 19 26 26 H 1.48499 * 109.47313 * 330.00336 * 23 21 19 27 27 N 1.30825 * 125.77896 * 179.74200 * 2 1 3 28 28 H 1.08993 * 109.47359 * 270.23334 * 1 2 3 29 29 H 1.08998 * 109.47280 * 30.23748 * 1 2 3 30 30 H 1.08998 * 109.46929 * 150.23198 * 1 2 3 31 31 H 1.08001 * 126.06692 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99622 * 179.68179 * 5 4 3 33 33 H 1.07999 * 120.05274 * 359.97438 * 9 8 6 34 34 H 1.07997 * 119.94425 * 180.27756 * 10 9 8 35 35 H 1.07998 * 120.10135 * 180.02562 * 13 12 11 36 36 H 1.09003 * 110.15132 * 136.84086 * 14 12 11 37 37 H 1.08996 * 110.15342 * 258.59754 * 14 12 11 38 38 H 1.09001 * 110.15693 * 147.64233 * 16 15 14 39 39 H 1.08999 * 110.15569 * 269.33084 * 16 15 14 40 40 H 1.08998 * 109.47076 * 210.00008 * 18 17 4 41 41 H 1.09000 * 109.47031 * 330.00239 * 18 17 4 42 42 H 0.97006 * 120.00379 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6193 0.7148 -0.0034 5 7 4.7495 1.5305 -0.0064 6 6 4.6129 2.8712 -0.0125 7 8 3.5038 3.3692 -0.0159 8 6 5.8114 3.7362 -0.0095 9 6 7.0864 3.1673 -0.0009 10 6 8.2019 3.9796 -0.0032 11 6 8.0586 5.3537 -0.0041 12 6 6.7943 5.9252 -0.0069 13 6 5.6731 5.1258 -0.0096 14 6 6.9803 7.4248 -0.0064 15 8 8.3380 7.6552 -0.4246 16 6 9.0610 6.4848 -0.0017 17 7 3.6087 -0.6433 0.0028 18 6 4.7859 -1.5155 0.0063 19 6 5.1900 -1.8081 1.4284 20 1 4.6262 -1.3869 2.2476 21 6 6.2790 -2.6144 1.6836 22 7 6.9651 -3.1277 0.6860 23 14 6.7803 -2.9765 3.4461 24 1 6.0792 -4.1970 3.9195 25 1 8.2481 -3.1932 3.5087 26 1 6.4124 -1.8272 4.3115 27 7 2.2719 -1.0613 0.0048 28 1 -0.3634 0.0042 1.0276 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8920 -0.5102 31 1 1.9874 2.1599 0.0004 32 1 5.6343 1.1331 -0.0040 33 1 7.1994 2.0933 0.0040 34 1 9.1886 3.5405 -0.0011 35 1 4.6897 5.5722 -0.0122 36 1 6.2873 7.8894 -0.7080 37 1 6.8235 7.8224 0.9962 38 1 9.8704 6.2707 -0.6997 39 1 9.4602 6.6321 1.0018 40 1 4.5477 -2.4492 -0.5032 41 1 5.6074 -1.0191 -0.5100 42 1 7.7315 -3.6948 0.8654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519939636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:29 Heat of formation + Delta-G solvation = 33.951080 kcal Electronic energy + Delta-G solvation = -26717.837695 eV Core-core repulsion = 22857.935198 eV Total energy + Delta-G solvation = -3859.902496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.21624 -40.69463 -39.29198 -37.27696 -34.87826 -33.83042 -32.18846 -31.93715 -31.72677 -29.19986 -28.50235 -28.07132 -26.07849 -25.44524 -23.29364 -22.80206 -22.02724 -21.12175 -19.85639 -19.30492 -17.55391 -16.97178 -16.73675 -16.68913 -16.46939 -15.77557 -15.57433 -15.22179 -14.71969 -14.61337 -14.24800 -14.07048 -13.93105 -13.78147 -13.16429 -12.95025 -12.90461 -12.79200 -12.54377 -12.43859 -12.07829 -12.02247 -11.80616 -11.60902 -11.25547 -11.11474 -10.92985 -10.48059 -10.41939 -10.37909 -10.03108 -9.85196 -9.59397 -9.24775 -8.94842 -8.76179 -7.94592 -7.48654 -6.37483 -4.46175 0.45456 0.99025 2.31442 2.69583 2.98016 3.13712 3.20850 3.24952 3.43749 3.55012 3.68193 3.71276 3.85494 4.20695 4.24708 4.47861 4.63741 4.88066 4.95578 4.96537 5.00178 5.03855 5.18324 5.32745 5.34564 5.40165 5.58215 5.64983 5.90297 5.91301 5.98008 6.02243 6.12816 6.13828 6.22579 6.31075 6.36844 6.48701 6.63193 6.79049 7.00303 7.46261 7.52832 7.57663 7.75363 7.84674 8.20951 8.57479 8.66847 9.21675 10.69525 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010086 B = 0.003670 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.543235 B = 7627.971461 C = 9923.587720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.291 4.291 4 C 0.299 3.701 5 N -0.633 5.633 6 C 0.565 3.435 7 O -0.510 6.510 8 C -0.121 4.121 9 C -0.075 4.075 10 C -0.097 4.097 11 C -0.109 4.109 12 C -0.144 4.144 13 C -0.031 4.031 14 C 0.093 3.907 15 O -0.361 6.361 16 C 0.089 3.911 17 N -0.346 5.346 18 C 0.257 3.743 19 C -0.542 4.542 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.890 5.890 23 Si 0.905 3.095 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.272 1.272 27 N -0.282 5.282 28 H 0.068 0.932 29 H 0.070 0.930 30 H 0.066 0.934 31 H 0.162 0.838 32 H 0.415 0.585 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.142 0.858 36 H 0.101 0.899 37 H 0.080 0.920 38 H 0.101 0.899 39 H 0.082 0.918 40 H 0.057 0.943 41 H 0.043 0.957 42 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.632 17.476 -2.071 17.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.323 4.323 4 C 0.077 3.923 5 N -0.280 5.280 6 C 0.353 3.647 7 O -0.385 6.385 8 C -0.124 4.124 9 C -0.094 4.094 10 C -0.115 4.115 11 C -0.109 4.109 12 C -0.144 4.144 13 C -0.050 4.050 14 C 0.017 3.983 15 O -0.279 6.279 16 C 0.012 3.988 17 N -0.132 5.132 18 C 0.139 3.861 19 C -0.580 4.580 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.197 1.197 27 N -0.107 5.107 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.253 0.747 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.160 0.840 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.075 0.925 41 H 0.061 0.939 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.291 16.560 -2.237 16.866 hybrid contribution 0.998 -0.112 1.116 1.502 sum 3.289 16.447 -1.121 16.810 Atomic orbital electron populations 1.20024 0.87532 1.02367 1.02184 1.22021 0.96556 0.90972 1.01921 1.21274 0.89037 1.00494 1.21458 1.17985 0.87823 0.83326 1.03150 1.42597 1.08474 1.05399 1.71481 1.18009 0.89003 0.80921 0.76777 1.90711 1.25909 1.73864 1.48042 1.19701 0.92673 0.93684 1.06361 1.21462 0.91282 1.00624 0.96037 1.20351 0.99397 0.91168 1.00595 1.21307 0.95773 0.95021 0.98815 1.20952 0.93809 0.96624 1.03037 1.20388 0.98608 0.91141 0.94834 1.21756 0.84696 0.90581 1.01266 1.89087 1.19605 1.38540 1.80684 1.21824 0.93770 0.81908 1.01271 1.49510 1.06498 1.01998 1.55154 1.19625 0.77810 0.89744 0.98913 1.21354 1.13375 1.31933 0.91335 0.91675 1.24929 0.95670 0.94827 0.98190 1.69914 1.19226 1.32444 1.31126 0.86364 0.77646 0.79141 0.83631 1.20152 1.20814 1.19676 1.77334 0.86133 1.21820 1.25435 0.91287 0.91118 0.91524 0.82062 0.74672 0.84362 0.84628 0.84014 0.88146 0.90198 0.88092 0.90047 0.92461 0.93918 0.92133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.92 10.44 36.01 0.38 -0.55 16 2 C 0.05 1.01 7.20 -82.46 -0.59 0.42 16 3 C -0.29 -5.96 9.58 -39.78 -0.38 -6.34 16 4 C 0.30 6.32 7.68 -152.75 -1.17 5.15 16 5 N -0.63 -11.21 5.36 -12.21 -0.07 -11.27 16 6 C 0.57 9.24 7.74 -12.35 -0.10 9.14 16 7 O -0.51 -9.36 13.47 5.30 0.07 -9.28 16 8 C -0.12 -1.59 5.88 -104.94 -0.62 -2.20 16 9 C -0.08 -0.86 9.54 -39.15 -0.37 -1.24 16 10 C -0.10 -0.95 10.03 -39.70 -0.40 -1.35 16 11 C -0.11 -1.06 6.33 -104.25 -0.66 -1.72 16 12 C -0.14 -1.48 6.31 -104.43 -0.66 -2.14 16 13 C -0.03 -0.36 9.59 -39.25 -0.38 -0.74 16 14 C 0.09 0.79 7.63 36.21 0.28 1.06 16 15 O -0.36 -3.54 11.72 -35.23 -0.41 -3.95 16 16 C 0.09 0.71 7.63 36.22 0.28 0.99 16 17 N -0.35 -8.08 3.62 -61.44 -0.22 -8.30 16 18 C 0.26 6.35 6.02 -5.19 -0.03 6.32 16 19 C -0.54 -14.38 9.39 -34.44 -0.32 -14.70 16 20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 22 N -0.89 -23.88 13.28 55.43 0.74 -23.15 16 23 Si 0.91 20.40 29.54 -169.99 -5.02 15.38 16 24 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 25 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 N -0.28 -6.55 12.56 33.64 0.42 -6.13 16 28 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.16 3.20 5.83 -52.49 -0.31 2.89 16 32 H 0.42 6.74 6.03 -40.82 -0.25 6.49 16 33 H 0.14 1.48 6.40 -52.49 -0.34 1.15 16 34 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 35 H 0.14 1.57 7.65 -52.49 -0.40 1.16 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 1.53 8.14 -51.93 -0.42 1.10 16 41 H 0.04 1.01 7.52 -51.93 -0.39 0.62 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -31.81 360.06 -8.95 -40.75 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.03 Total: 6.76 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: -4.85 Total: -6.23 kcal Atomic # 7 Polarization: -49.72 SS G_CDS: 0.87 Total: -48.85 kcal Atomic # 8 Polarization: -12.89 SS G_CDS: -0.34 Total: -13.23 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -5.02 Total: 15.38 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.81 -8.95 -40.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519939636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.705 kcal (2) G-P(sol) polarization free energy of solvation -31.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.754 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds