Wall clock time and date at job start Tue Mar 31 2020 15:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.39731 * 125.77839 * 2 1 4 4 C 1.36140 * 107.86027 * 180.14835 * 3 2 1 5 5 N 1.39379 * 126.26239 * 179.90408 * 4 3 2 6 6 C 1.34773 * 120.00266 * 359.68652 * 5 4 3 7 7 O 1.21573 * 119.99906 * 359.97438 * 6 5 4 8 8 C 1.47804 * 119.99942 * 179.72284 * 6 5 4 9 9 C 1.39619 * 120.13627 * 0.02562 * 8 6 5 10 10 C 1.37997 * 119.88984 * 179.75620 * 9 8 6 11 11 C 1.38146 * 120.10906 * 0.48062 * 10 9 8 12 12 C 1.38750 * 120.27837 * 359.79314 * 11 10 9 13 13 C 1.37699 * 120.18830 * 359.96474 * 12 11 10 14 14 C 1.51115 * 107.25448 * 179.97438 * 12 11 10 15 15 O 1.43922 * 105.95493 * 17.72230 * 14 12 11 16 16 C 1.43924 * 104.97291 * 331.48019 * 15 14 12 17 17 N 1.35809 * 107.47133 * 359.63678 * 4 3 2 18 18 C 1.46506 * 126.09255 * 180.21039 * 17 4 3 19 19 C 1.50703 * 109.47085 * 89.99904 * 18 17 4 20 20 H 1.07999 * 120.00191 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99843 * 179.97438 * 19 18 17 22 22 N 1.31507 * 119.99789 * 0.02562 * 21 19 18 23 23 Si 1.86793 * 119.99802 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.47068 * 90.00565 * 23 21 19 25 25 H 1.48502 * 109.47099 * 210.00359 * 23 21 19 26 26 H 1.48499 * 109.47313 * 330.00336 * 23 21 19 27 27 N 1.30825 * 125.77896 * 179.74200 * 2 1 3 28 28 H 1.08993 * 109.47359 * 270.23334 * 1 2 3 29 29 H 1.08998 * 109.47280 * 30.23748 * 1 2 3 30 30 H 1.08998 * 109.46929 * 150.23198 * 1 2 3 31 31 H 1.08001 * 126.06692 * 0.02562 * 3 2 1 32 32 H 0.97000 * 119.99622 * 179.68179 * 5 4 3 33 33 H 1.07999 * 120.05274 * 359.97438 * 9 8 6 34 34 H 1.07997 * 119.94425 * 180.27756 * 10 9 8 35 35 H 1.07998 * 120.10135 * 180.02562 * 13 12 11 36 36 H 1.09003 * 110.15132 * 136.84086 * 14 12 11 37 37 H 1.08996 * 110.15342 * 258.59754 * 14 12 11 38 38 H 1.09001 * 110.15693 * 147.64233 * 16 15 14 39 39 H 1.08999 * 110.15569 * 269.33084 * 16 15 14 40 40 H 1.08998 * 109.47076 * 210.00008 * 18 17 4 41 41 H 1.09000 * 109.47031 * 330.00239 * 18 17 4 42 42 H 0.97006 * 120.00379 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3239 1.1336 0.0000 4 6 3.6193 0.7148 -0.0034 5 7 4.7495 1.5305 -0.0064 6 6 4.6129 2.8712 -0.0125 7 8 3.5038 3.3692 -0.0159 8 6 5.8114 3.7362 -0.0095 9 6 7.0864 3.1673 -0.0009 10 6 8.2019 3.9796 -0.0032 11 6 8.0586 5.3537 -0.0041 12 6 6.7943 5.9252 -0.0069 13 6 5.6731 5.1258 -0.0096 14 6 6.9803 7.4248 -0.0064 15 8 8.3380 7.6552 -0.4246 16 6 9.0610 6.4848 -0.0017 17 7 3.6087 -0.6433 0.0028 18 6 4.7859 -1.5155 0.0063 19 6 5.1900 -1.8081 1.4284 20 1 4.6262 -1.3869 2.2476 21 6 6.2790 -2.6144 1.6836 22 7 6.9651 -3.1277 0.6860 23 14 6.7803 -2.9765 3.4461 24 1 6.0792 -4.1970 3.9195 25 1 8.2481 -3.1932 3.5087 26 1 6.4124 -1.8272 4.3115 27 7 2.2719 -1.0613 0.0048 28 1 -0.3634 0.0042 1.0276 29 1 -0.3634 0.8878 -0.5175 30 1 -0.3633 -0.8920 -0.5102 31 1 1.9874 2.1599 0.0004 32 1 5.6343 1.1331 -0.0040 33 1 7.1994 2.0933 0.0040 34 1 9.1886 3.5405 -0.0011 35 1 4.6897 5.5722 -0.0122 36 1 6.2873 7.8894 -0.7080 37 1 6.8235 7.8224 0.9962 38 1 9.8704 6.2707 -0.6997 39 1 9.4602 6.6321 1.0018 40 1 4.5477 -2.4492 -0.5032 41 1 5.6074 -1.0191 -0.5100 42 1 7.7315 -3.6948 0.8654 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519939636.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:28 Heat of formation + Delta-G solvation = 14.923300 kcal Electronic energy + Delta-G solvation = -26718.662801 eV Core-core repulsion = 22857.935198 eV Total energy + Delta-G solvation = -3860.727603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.53294 -41.76500 -40.57797 -38.15581 -36.38624 -35.67908 -33.88069 -32.82594 -32.63243 -30.77740 -29.90365 -28.93981 -27.82749 -26.41019 -24.79453 -24.14367 -22.83016 -22.35120 -21.37151 -20.67910 -18.96500 -18.73023 -18.14006 -17.46904 -17.33077 -16.91286 -16.76648 -16.71736 -16.30966 -15.76601 -15.60971 -15.36875 -14.98197 -14.61150 -14.55181 -14.44179 -14.07550 -13.95601 -13.64528 -13.55224 -13.42568 -13.25825 -13.11352 -12.91986 -12.78821 -12.73573 -12.31688 -12.05155 -11.99713 -11.72064 -11.53575 -11.15238 -11.08994 -10.78202 -10.08932 -9.76389 -9.65166 -9.11066 -8.38119 -6.55779 -0.49825 0.16117 0.86829 1.24010 1.34991 1.37768 1.47915 1.63619 1.99583 2.11432 2.32831 2.60669 2.90820 2.92216 3.01362 3.41262 3.52007 3.79514 3.80854 4.05645 4.13253 4.25349 4.35460 4.42934 4.54540 4.57345 4.66793 4.71521 4.73569 4.78681 4.81759 4.83881 4.89242 4.93570 5.07524 5.09279 5.17339 5.18829 5.23939 5.49216 5.57039 5.70912 5.74520 5.93007 6.06239 6.20849 6.53951 6.81870 6.97561 7.16337 8.68381 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010086 B = 0.003670 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2775.543235 B = 7627.971461 C = 9923.587720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.059 3.941 3 C -0.303 4.303 4 C 0.296 3.704 5 N -0.633 5.633 6 C 0.567 3.433 7 O -0.534 6.534 8 C -0.140 4.140 9 C -0.080 4.080 10 C -0.095 4.095 11 C -0.104 4.104 12 C -0.149 4.149 13 C -0.035 4.035 14 C 0.093 3.907 15 O -0.376 6.376 16 C 0.087 3.913 17 N -0.368 5.368 18 C 0.272 3.728 19 C -0.558 4.558 20 H 0.046 0.954 21 C 0.031 3.969 22 N -0.912 5.912 23 Si 0.967 3.033 24 H -0.277 1.277 25 H -0.267 1.267 26 H -0.272 1.272 27 N -0.326 5.326 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.169 0.831 32 H 0.420 0.580 33 H 0.140 0.860 34 H 0.163 0.837 35 H 0.142 0.858 36 H 0.112 0.888 37 H 0.097 0.903 38 H 0.120 0.880 39 H 0.101 0.899 40 H 0.028 0.972 41 H 0.047 0.953 42 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.824 19.120 -1.299 19.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.106 4.106 3 C -0.335 4.335 4 C 0.074 3.926 5 N -0.281 5.281 6 C 0.357 3.643 7 O -0.410 6.410 8 C -0.144 4.144 9 C -0.099 4.099 10 C -0.113 4.113 11 C -0.105 4.105 12 C -0.149 4.149 13 C -0.054 4.054 14 C 0.017 3.983 15 O -0.295 6.295 16 C 0.011 3.989 17 N -0.154 5.154 18 C 0.154 3.846 19 C -0.596 4.596 20 H 0.065 0.935 21 C -0.172 4.172 22 N -0.549 5.549 23 Si 0.792 3.208 24 H -0.202 1.202 25 H -0.191 1.191 26 H -0.197 1.197 27 N -0.151 5.151 28 H 0.104 0.896 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.187 0.813 32 H 0.259 0.741 33 H 0.158 0.842 34 H 0.181 0.819 35 H 0.160 0.840 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.047 0.953 41 H 0.065 0.935 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.497 18.220 -1.476 18.611 hybrid contribution 0.635 -0.511 0.837 1.168 sum 4.131 17.710 -0.640 18.196 Atomic orbital electron populations 1.20235 0.83769 1.04133 1.03775 1.22884 0.98808 0.89914 0.99029 1.21498 0.88996 1.00945 1.22014 1.18368 0.89294 0.82866 1.02059 1.42742 1.07848 1.05727 1.71752 1.18576 0.89888 0.80405 0.75420 1.90672 1.27175 1.74036 1.49156 1.19500 0.91818 0.93763 1.09282 1.21561 0.91224 1.01051 0.96059 1.20615 0.99946 0.91191 0.99549 1.21676 0.96265 0.95498 0.97057 1.21187 0.93540 0.97827 1.02372 1.20415 0.99326 0.90667 0.95023 1.21896 0.84546 0.89242 1.02604 1.89077 1.20146 1.39217 1.81090 1.22035 0.93414 0.80490 1.02924 1.49334 1.06338 1.02625 1.57105 1.19239 0.78579 0.88966 0.97861 1.21403 1.13865 1.32782 0.91553 0.93526 1.25648 0.95306 0.94206 1.01997 1.69982 1.19514 1.32546 1.32907 0.85414 0.77986 0.78589 0.78857 1.20237 1.19129 1.19683 1.77284 0.86372 1.23600 1.27882 0.89622 0.88531 0.90566 0.81337 0.74112 0.84235 0.81937 0.84012 0.86978 0.88544 0.86239 0.88115 0.95349 0.93477 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.70 10.44 71.24 0.74 -0.96 16 2 C 0.06 2.38 7.20 43.07 0.31 2.69 16 3 C -0.30 -12.57 9.58 22.14 0.21 -12.36 16 4 C 0.30 12.90 7.68 131.18 1.01 13.90 16 5 N -0.63 -23.12 5.36 -310.82 -1.67 -24.79 16 6 C 0.57 18.92 7.74 86.77 0.67 19.59 16 7 O -0.53 -19.92 13.47 -3.95 -0.05 -19.98 16 8 C -0.14 -3.68 5.88 -20.07 -0.12 -3.80 16 9 C -0.08 -1.78 9.54 22.55 0.22 -1.57 16 10 C -0.10 -1.66 10.03 22.19 0.22 -1.44 16 11 C -0.10 -1.78 6.33 -19.62 -0.12 -1.91 16 12 C -0.15 -2.81 6.31 -19.74 -0.12 -2.93 16 13 C -0.04 -0.81 9.59 22.48 0.22 -0.59 16 14 C 0.09 1.35 7.63 71.37 0.54 1.90 16 15 O -0.38 -6.36 11.72 -148.98 -1.75 -8.11 16 16 C 0.09 1.12 7.63 71.38 0.54 1.66 16 17 N -0.37 -17.87 3.62 -348.31 -1.26 -19.13 16 18 C 0.27 14.04 6.02 85.63 0.52 14.56 16 19 C -0.56 -30.42 9.39 25.60 0.24 -30.18 16 20 H 0.05 2.67 7.81 -2.91 -0.02 2.65 16 21 C 0.03 1.60 5.46 84.66 0.46 2.06 16 22 N -0.91 -49.19 13.28 21.45 0.28 -48.91 16 23 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 24 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 25 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 26 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 27 N -0.33 -15.60 12.56 -47.48 -0.60 -16.19 16 28 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.10 2.20 8.14 -2.39 -0.02 2.19 16 30 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.17 6.71 5.83 -2.91 -0.02 6.70 16 32 H 0.42 14.15 6.03 -92.71 -0.56 13.59 16 33 H 0.14 2.98 6.40 -2.91 -0.02 2.96 16 34 H 0.16 1.91 8.06 -2.91 -0.02 1.88 16 35 H 0.14 3.13 7.65 -2.91 -0.02 3.10 16 36 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 37 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.12 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.03 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.05 2.33 7.52 -2.39 -0.02 2.32 16 42 H 0.28 13.84 8.31 -92.70 -0.77 13.07 16 Total: -1.00 -69.44 360.06 3.04 -66.40 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 0.51 Total: 26.39 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: 5.54 Total: 0.64 kcal Atomic # 7 Polarization: -105.78 SS G_CDS: -3.24 Total: -109.02 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -1.80 Total: -28.09 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -69.44 3.04 -66.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519939636.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.327 kcal (2) G-P(sol) polarization free energy of solvation -69.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds