Wall clock time and date at job start Tue Mar 31 2020 15:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31353 * 119.63976 * 2 1 4 4 C 1.33766 * 119.76194 * 179.97438 * 3 2 1 5 5 C 1.40713 * 120.86621 * 180.02562 * 4 3 2 6 6 C 1.35733 * 120.08089 * 179.76773 * 5 4 3 7 7 C 1.40620 * 120.83819 * 0.47073 * 6 5 4 8 8 C 1.47862 * 119.75412 * 179.77620 * 7 6 5 9 9 O 1.21560 * 119.99641 * 352.74396 * 8 7 6 10 10 N 1.34773 * 120.00458 * 172.74673 * 8 7 6 11 11 C 1.47580 * 134.49519 * 174.42228 * 10 8 7 12 12 C 1.53940 * 86.11917 * 155.35652 * 11 10 8 13 13 O 1.42905 * 113.74286 * 269.15566 * 12 11 10 14 14 C 1.50699 * 113.74419 * 137.95348 * 12 11 10 15 15 H 1.07999 * 119.99940 * 1.92426 * 14 12 11 16 16 C 1.37876 * 119.99879 * 181.92428 * 14 12 11 17 17 N 1.31521 * 119.99927 * 179.97438 * 16 14 12 18 18 Si 1.86800 * 120.00253 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.46681 * 269.99668 * 18 16 14 20 20 H 1.48491 * 109.47280 * 29.99719 * 18 16 14 21 21 H 1.48504 * 109.47069 * 150.00048 * 18 16 14 22 22 C 1.47807 * 134.45475 * 354.28350 * 10 8 7 23 23 C 1.38411 * 120.49764 * 359.50136 * 7 6 5 24 24 C 1.40456 * 119.49420 * 0.25145 * 23 7 6 25 25 N 1.33781 * 120.93461 * 180.02562 * 24 23 7 26 26 C 1.31311 * 119.73546 * 179.97438 * 25 24 23 27 27 C 1.50690 * 119.66228 * 180.02562 * 26 25 24 28 28 H 1.09008 * 109.47351 * 269.97857 * 1 2 3 29 29 H 1.08996 * 109.47197 * 29.97922 * 1 2 3 30 30 H 1.08996 * 109.47062 * 149.98181 * 1 2 3 31 31 H 1.07995 * 119.95859 * 359.97438 * 5 4 3 32 32 H 1.07993 * 119.57925 * 180.25181 * 6 5 4 33 33 H 1.09004 * 113.76781 * 41.05021 * 11 10 8 34 34 H 1.09001 * 113.87291 * 269.67309 * 11 10 8 35 35 H 0.96694 * 114.00079 * 178.07132 * 13 12 11 36 36 H 0.96996 * 120.00603 * 179.97438 * 17 16 14 37 37 H 1.09006 * 113.77016 * 90.38504 * 22 10 8 38 38 H 1.08996 * 113.84041 * 318.92569 * 22 10 8 39 39 H 1.07993 * 120.25140 * 180.27500 * 23 7 6 40 40 H 1.09007 * 109.47184 * 90.00268 * 27 26 25 41 41 H 1.09004 * 109.47475 * 209.99959 * 27 26 25 42 42 H 1.09004 * 109.47502 * 330.00275 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1566 1.1417 0.0000 4 6 3.4942 1.1445 0.0005 5 6 4.2136 2.3539 0.0011 6 6 5.5708 2.3382 0.0064 7 6 6.2776 1.1226 0.0014 8 6 7.7562 1.1334 0.0023 9 8 8.3563 2.1828 -0.1257 10 7 8.4386 -0.0200 0.1450 11 6 9.8660 -0.3909 0.0897 12 6 9.4822 -1.5859 0.9811 13 8 9.5862 -1.3164 2.3806 14 6 10.1449 -2.8789 0.5810 15 1 10.8419 -2.8958 -0.2439 16 6 9.8615 -4.0402 1.2679 17 7 10.4394 -5.1687 0.9184 18 14 8.6554 -4.0111 2.6942 19 1 9.3882 -3.7372 3.9564 20 1 7.6457 -2.9463 2.4669 21 1 7.9739 -5.3268 2.7930 22 6 8.0573 -1.4208 0.4223 23 6 5.5997 -0.0842 0.0014 24 6 4.1952 -0.0883 0.0010 25 7 3.5109 -1.2379 0.0016 26 6 2.1980 -1.2142 0.0017 27 6 1.4288 -2.5100 0.0028 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 3.6851 3.2957 0.0007 32 1 6.1147 3.2711 0.0109 33 1 10.5257 0.3269 0.5771 34 1 10.2092 -0.6768 -0.9046 35 1 9.3179 -2.0549 2.9443 36 1 10.2403 -5.9857 1.4019 37 1 7.8662 -2.0100 -0.4747 38 1 7.2756 -1.5239 1.1748 39 1 6.1466 -1.0154 0.0021 40 1 1.2434 -2.8216 1.0309 41 1 0.4779 -2.3687 -0.5110 42 1 2.0086 -3.2773 -0.5104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000526012573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:45 Heat of formation + Delta-G solvation = 42.255502 kcal Electronic energy + Delta-G solvation = -27415.344646 eV Core-core repulsion = 23555.802256 eV Total energy + Delta-G solvation = -3859.542389 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.70847 -40.07425 -38.25853 -37.07700 -35.26934 -34.57727 -33.30230 -32.59759 -31.48411 -29.39300 -28.41174 -28.17988 -25.91120 -25.53732 -23.76864 -23.27498 -22.46695 -20.64665 -19.44132 -18.45860 -17.95792 -17.45705 -16.77203 -16.44831 -16.12407 -15.80713 -15.31248 -14.99853 -14.44648 -14.09061 -13.94858 -13.71709 -13.62709 -13.56047 -13.43825 -13.30120 -13.11142 -12.87085 -12.59128 -12.39477 -12.26329 -12.09116 -11.81709 -11.69426 -11.56496 -11.43971 -11.27637 -10.99215 -10.66451 -10.18184 -9.95099 -9.40952 -9.31308 -9.07143 -8.93507 -8.73683 -8.69557 -8.15016 -6.46640 -4.53521 -0.08567 0.27571 1.67431 2.26416 2.96173 2.98500 3.11166 3.17783 3.32504 3.66237 3.75778 3.89377 3.99121 4.00120 4.38530 4.46252 4.53169 4.67109 4.86259 4.91530 4.98121 5.03609 5.13126 5.16945 5.25710 5.34225 5.47047 5.48381 5.55893 5.65540 5.70810 5.85191 5.90827 5.95976 6.04003 6.11299 6.15439 6.26626 6.34063 6.49371 6.51849 7.08532 7.13946 7.53584 7.97824 8.10063 8.40898 8.46242 8.57322 9.10517 10.65363 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.004115 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.966441 B = 6802.949806 C = 8553.692414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.111 3.889 3 N -0.430 5.430 4 C 0.092 3.908 5 C -0.095 4.095 6 C -0.050 4.050 7 C -0.100 4.100 8 C 0.571 3.429 9 O -0.549 6.549 10 N -0.625 5.625 11 C 0.130 3.870 12 C 0.198 3.802 13 O -0.552 6.552 14 C -0.538 4.538 15 H 0.093 0.907 16 C 0.083 3.917 17 N -0.874 5.874 18 Si 0.855 3.145 19 H -0.266 1.266 20 H -0.256 1.256 21 H -0.281 1.281 22 C 0.051 3.949 23 C -0.055 4.055 24 C 0.072 3.928 25 N -0.415 5.415 26 C 0.102 3.898 27 C -0.107 4.107 28 H 0.086 0.914 29 H 0.082 0.918 30 H 0.086 0.914 31 H 0.144 0.856 32 H 0.149 0.851 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.353 0.647 36 H 0.272 0.728 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.161 0.839 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.848 6.600 -1.606 20.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.045 4.045 3 N -0.144 5.144 4 C -0.032 4.032 5 C -0.114 4.114 6 C -0.070 4.070 7 C -0.105 4.105 8 C 0.361 3.639 9 O -0.429 6.429 10 N -0.358 5.358 11 C 0.008 3.992 12 C 0.157 3.843 13 O -0.363 6.363 14 C -0.575 4.575 15 H 0.111 0.889 16 C -0.123 4.123 17 N -0.509 5.509 18 Si 0.683 3.317 19 H -0.192 1.192 20 H -0.181 1.181 21 H -0.208 1.208 22 C -0.072 4.072 23 C -0.075 4.075 24 C -0.052 4.052 25 N -0.130 5.130 26 C -0.055 4.055 27 C -0.164 4.164 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.162 0.838 32 H 0.166 0.834 33 H 0.098 0.902 34 H 0.117 0.883 35 H 0.205 0.795 36 H 0.082 0.918 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.178 0.822 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.165 7.797 -1.883 20.776 hybrid contribution -0.856 -0.744 0.989 1.505 sum -20.021 7.052 -0.895 21.245 Atomic orbital electron populations 1.20845 0.87427 1.04249 1.03804 1.22457 0.98458 0.88920 0.94715 1.68539 1.07265 1.28637 1.10009 1.19648 0.90057 0.94303 0.99187 1.20637 0.93241 0.96579 1.00986 1.21008 0.93388 0.98188 0.94466 1.20146 0.94045 0.93589 1.02681 1.17697 0.85966 0.82957 0.77275 1.90736 1.70008 1.30191 1.51930 1.50062 1.10736 1.07019 1.67996 1.23347 0.81359 0.94645 0.99812 1.20537 0.89990 0.94270 0.79537 1.86473 1.89726 1.42776 1.17315 1.21208 1.27857 0.89557 1.18907 0.88916 1.24987 0.95198 0.95464 0.96670 1.69848 1.41434 0.99474 1.40151 0.87394 0.82213 0.78534 0.83563 1.19242 1.18149 1.20781 1.24925 1.02404 0.78966 1.00861 1.22046 0.91466 0.99739 0.94270 1.19427 0.94894 0.89270 1.01612 1.68533 1.07672 1.28297 1.08491 1.22420 0.90521 0.96742 0.95782 1.20849 0.99226 0.92453 1.03883 0.89575 0.89960 0.89570 0.83801 0.83378 0.90187 0.88297 0.79525 0.91813 0.88041 0.90560 0.82192 0.89571 0.89685 0.89713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.66 9.76 36.01 0.35 -0.31 16 2 C 0.11 1.22 6.79 -82.25 -0.56 0.66 16 3 N -0.43 -5.71 10.37 -7.00 -0.07 -5.79 16 4 C 0.09 1.34 6.59 -84.72 -0.56 0.78 16 5 C -0.10 -1.23 9.95 -39.54 -0.39 -1.63 16 6 C -0.05 -0.71 9.49 -39.58 -0.38 -1.08 16 7 C -0.10 -1.66 5.87 -105.00 -0.62 -2.28 16 8 C 0.57 11.14 7.98 -12.32 -0.10 11.05 16 9 O -0.55 -11.84 17.07 5.31 0.09 -11.75 16 10 N -0.63 -12.40 3.60 -179.23 -0.64 -13.04 16 11 C 0.13 2.62 8.23 -2.97 -0.02 2.60 16 12 C 0.20 4.39 1.06 -90.85 -0.10 4.30 16 13 O -0.55 -12.80 13.35 -35.23 -0.47 -13.27 16 14 C -0.54 -13.53 9.19 -34.44 -0.32 -13.85 16 15 H 0.09 2.49 8.06 -52.49 -0.42 2.07 16 16 C 0.08 2.12 5.47 -17.82 -0.10 2.03 16 17 N -0.87 -24.04 13.96 55.43 0.77 -23.27 16 18 Si 0.85 18.62 24.31 -169.99 -4.13 14.49 16 19 H -0.27 -5.67 7.05 56.52 0.40 -5.27 16 20 H -0.26 -5.25 5.16 56.52 0.29 -4.96 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 C 0.05 1.00 4.66 -2.84 -0.01 0.99 16 23 C -0.06 -0.91 9.05 -38.68 -0.35 -1.26 16 24 C 0.07 1.13 6.59 -84.81 -0.56 0.57 16 25 N -0.42 -6.23 10.37 -7.07 -0.07 -6.30 16 26 C 0.10 1.19 6.79 -82.27 -0.56 0.63 16 27 C -0.11 -0.78 9.77 36.00 0.35 -0.43 16 28 H 0.09 0.44 8.14 -51.92 -0.42 0.01 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.33 5.92 -51.93 -0.31 0.03 16 31 H 0.14 1.49 8.06 -52.49 -0.42 1.07 16 32 H 0.15 1.93 7.63 -52.49 -0.40 1.53 16 33 H 0.08 1.62 8.14 -51.93 -0.42 1.19 16 34 H 0.10 1.84 8.09 -51.93 -0.42 1.42 16 35 H 0.35 7.81 3.57 45.56 0.16 7.98 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.10 1.88 7.99 -51.93 -0.41 1.46 16 38 H 0.08 1.47 5.60 -51.93 -0.29 1.18 16 39 H 0.16 2.68 4.03 -52.49 -0.21 2.47 16 40 H 0.09 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.08 0.38 5.91 -51.93 -0.31 0.07 16 42 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 343.46 15.07 5.18 5.18 Total: -1.00 -31.74 343.46 -7.66 -39.40 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -4.40 Total: 11.58 kcal Atomic # 6 Polarization: 6.68 SS G_CDS: -3.91 Total: 2.77 kcal Atomic # 7 Polarization: -48.38 SS G_CDS: -0.02 Total: -48.40 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.38 Total: -25.02 kcal Atomic # 14 Polarization: 18.62 SS G_CDS: -4.13 Total: 14.49 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.74 -7.66 -39.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526012573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.660 kcal (2) G-P(sol) polarization free energy of solvation -31.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds