Wall clock time and date at job start Tue Mar 31 2020 15:21:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31353 * 119.63976 * 2 1 4 4 C 1.33766 * 119.76194 * 179.97438 * 3 2 1 5 5 C 1.40713 * 120.86621 * 180.02562 * 4 3 2 6 6 C 1.35733 * 120.08089 * 179.76773 * 5 4 3 7 7 C 1.40620 * 120.83819 * 0.47073 * 6 5 4 8 8 C 1.47862 * 119.75412 * 179.77620 * 7 6 5 9 9 O 1.21560 * 119.99641 * 352.74396 * 8 7 6 10 10 N 1.34773 * 120.00458 * 172.74673 * 8 7 6 11 11 C 1.47580 * 134.49519 * 174.42228 * 10 8 7 12 12 C 1.53940 * 86.11917 * 155.35652 * 11 10 8 13 13 O 1.42905 * 113.74286 * 269.15566 * 12 11 10 14 14 C 1.50699 * 113.74419 * 137.95348 * 12 11 10 15 15 H 1.07999 * 119.99940 * 1.92426 * 14 12 11 16 16 C 1.37876 * 119.99879 * 181.92428 * 14 12 11 17 17 N 1.31521 * 119.99927 * 179.97438 * 16 14 12 18 18 Si 1.86800 * 120.00253 * 0.02562 * 16 14 12 19 19 H 1.48500 * 109.46681 * 269.99668 * 18 16 14 20 20 H 1.48491 * 109.47280 * 29.99719 * 18 16 14 21 21 H 1.48504 * 109.47069 * 150.00048 * 18 16 14 22 22 C 1.47807 * 134.45475 * 354.28350 * 10 8 7 23 23 C 1.38411 * 120.49764 * 359.50136 * 7 6 5 24 24 C 1.40456 * 119.49420 * 0.25145 * 23 7 6 25 25 N 1.33781 * 120.93461 * 180.02562 * 24 23 7 26 26 C 1.31311 * 119.73546 * 179.97438 * 25 24 23 27 27 C 1.50690 * 119.66228 * 180.02562 * 26 25 24 28 28 H 1.09008 * 109.47351 * 269.97857 * 1 2 3 29 29 H 1.08996 * 109.47197 * 29.97922 * 1 2 3 30 30 H 1.08996 * 109.47062 * 149.98181 * 1 2 3 31 31 H 1.07995 * 119.95859 * 359.97438 * 5 4 3 32 32 H 1.07993 * 119.57925 * 180.25181 * 6 5 4 33 33 H 1.09004 * 113.76781 * 41.05021 * 11 10 8 34 34 H 1.09001 * 113.87291 * 269.67309 * 11 10 8 35 35 H 0.96694 * 114.00079 * 178.07132 * 13 12 11 36 36 H 0.96996 * 120.00603 * 179.97438 * 17 16 14 37 37 H 1.09006 * 113.77016 * 90.38504 * 22 10 8 38 38 H 1.08996 * 113.84041 * 318.92569 * 22 10 8 39 39 H 1.07993 * 120.25140 * 180.27500 * 23 7 6 40 40 H 1.09007 * 109.47184 * 90.00268 * 27 26 25 41 41 H 1.09004 * 109.47475 * 209.99959 * 27 26 25 42 42 H 1.09004 * 109.47502 * 330.00275 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1566 1.1417 0.0000 4 6 3.4942 1.1445 0.0005 5 6 4.2136 2.3539 0.0011 6 6 5.5708 2.3382 0.0064 7 6 6.2776 1.1226 0.0014 8 6 7.7562 1.1334 0.0023 9 8 8.3563 2.1828 -0.1257 10 7 8.4386 -0.0200 0.1450 11 6 9.8660 -0.3909 0.0897 12 6 9.4822 -1.5859 0.9811 13 8 9.5862 -1.3164 2.3806 14 6 10.1449 -2.8789 0.5810 15 1 10.8419 -2.8958 -0.2439 16 6 9.8615 -4.0402 1.2679 17 7 10.4394 -5.1687 0.9184 18 14 8.6554 -4.0111 2.6942 19 1 9.3882 -3.7372 3.9564 20 1 7.6457 -2.9463 2.4669 21 1 7.9739 -5.3268 2.7930 22 6 8.0573 -1.4208 0.4223 23 6 5.5997 -0.0842 0.0014 24 6 4.1952 -0.0883 0.0010 25 7 3.5109 -1.2379 0.0016 26 6 2.1980 -1.2142 0.0017 27 6 1.4288 -2.5100 0.0028 28 1 -0.3634 -0.0004 1.0277 29 1 -0.3633 0.8901 -0.5135 30 1 -0.3633 -0.8898 -0.5141 31 1 3.6851 3.2957 0.0007 32 1 6.1147 3.2711 0.0109 33 1 10.5257 0.3269 0.5771 34 1 10.2092 -0.6768 -0.9046 35 1 9.3179 -2.0549 2.9443 36 1 10.2403 -5.9857 1.4019 37 1 7.8662 -2.0100 -0.4747 38 1 7.2756 -1.5239 1.1748 39 1 6.1466 -1.0154 0.0021 40 1 1.2434 -2.8216 1.0309 41 1 0.4779 -2.3687 -0.5110 42 1 2.0086 -3.2773 -0.5104 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000526012573.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:21:45 Heat of formation + Delta-G solvation = 17.957918 kcal Electronic energy + Delta-G solvation = -27416.398268 eV Core-core repulsion = 23555.802256 eV Total energy + Delta-G solvation = -3860.596012 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.71627 -41.61407 -39.70906 -38.35367 -36.41430 -36.15756 -34.58127 -34.18592 -32.58369 -30.76861 -29.35311 -29.24695 -27.48523 -27.29018 -24.75437 -24.27138 -23.55967 -22.20914 -20.92669 -19.56787 -19.43317 -19.08671 -18.30507 -17.92598 -17.39366 -16.82427 -16.62886 -16.50729 -15.79510 -15.50157 -15.27196 -15.00876 -14.91740 -14.74660 -14.37615 -14.31553 -14.17237 -14.01205 -13.95469 -13.83830 -13.50172 -13.10432 -12.90080 -12.80752 -12.70320 -12.54069 -12.50181 -12.42429 -12.32210 -11.99089 -11.60532 -11.16793 -10.97613 -10.57237 -10.22211 -9.98970 -9.81395 -9.70475 -8.45447 -6.57662 -1.14490 -0.73264 0.59035 1.15695 1.21842 1.25343 1.36085 1.64408 2.02344 2.14250 2.70574 2.74779 2.79851 2.86903 3.02829 3.10536 3.32466 3.50611 3.66604 3.75124 3.82150 3.97861 4.11258 4.26348 4.28084 4.40774 4.41692 4.52251 4.59191 4.62558 4.68350 4.76825 4.77557 4.83272 4.83747 4.86891 4.97495 5.08024 5.08824 5.24622 5.33516 5.50860 6.01437 6.13769 6.49523 6.53829 6.57981 6.64315 6.87922 7.10527 8.69789 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.012707 B = 0.004115 C = 0.003273 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2202.966441 B = 6802.949806 C = 8553.692414 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.119 3.881 3 N -0.446 5.446 4 C 0.079 3.921 5 C -0.080 4.080 6 C -0.056 4.056 7 C -0.115 4.115 8 C 0.571 3.429 9 O -0.575 6.575 10 N -0.628 5.628 11 C 0.129 3.871 12 C 0.188 3.812 13 O -0.560 6.560 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.035 3.965 17 N -0.920 5.920 18 Si 0.910 3.090 19 H -0.255 1.255 20 H -0.237 1.237 21 H -0.279 1.279 22 C 0.067 3.933 23 C -0.061 4.061 24 C 0.049 3.951 25 N -0.450 5.450 26 C 0.106 3.894 27 C -0.107 4.107 28 H 0.106 0.894 29 H 0.086 0.914 30 H 0.116 0.884 31 H 0.172 0.828 32 H 0.157 0.843 33 H 0.077 0.923 34 H 0.111 0.889 35 H 0.357 0.643 36 H 0.274 0.726 37 H 0.110 0.890 38 H 0.084 0.916 39 H 0.151 0.849 40 H 0.103 0.897 41 H 0.121 0.879 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.108 7.047 -0.935 25.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.038 4.038 3 N -0.160 5.160 4 C -0.044 4.044 5 C -0.099 4.099 6 C -0.077 4.077 7 C -0.119 4.119 8 C 0.362 3.638 9 O -0.457 6.457 10 N -0.360 5.360 11 C 0.007 3.993 12 C 0.147 3.853 13 O -0.371 6.371 14 C -0.580 4.580 15 H 0.080 0.920 16 C -0.167 4.167 17 N -0.557 5.557 18 Si 0.735 3.265 19 H -0.181 1.181 20 H -0.161 1.161 21 H -0.205 1.205 22 C -0.055 4.055 23 C -0.081 4.081 24 C -0.073 4.073 25 N -0.165 5.165 26 C -0.052 4.052 27 C -0.164 4.164 28 H 0.124 0.876 29 H 0.105 0.895 30 H 0.135 0.865 31 H 0.190 0.810 32 H 0.174 0.826 33 H 0.096 0.904 34 H 0.129 0.871 35 H 0.209 0.791 36 H 0.084 0.916 37 H 0.128 0.872 38 H 0.102 0.898 39 H 0.168 0.832 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -23.405 8.273 -1.217 24.854 hybrid contribution 0.309 -0.947 0.717 1.228 sum -23.096 7.325 -0.500 24.235 Atomic orbital electron populations 1.21075 0.83620 1.05997 1.05461 1.23329 1.00733 0.88039 0.91724 1.68655 1.06443 1.29754 1.11190 1.19870 0.90957 0.94289 0.99314 1.20889 0.92663 0.97337 0.99030 1.21056 0.93926 0.97511 0.95159 1.19956 0.92127 0.94880 1.04965 1.18133 0.87187 0.82189 0.76274 1.90707 1.70906 1.30873 1.53175 1.50015 1.10352 1.07293 1.68370 1.23345 0.82032 0.93867 1.00047 1.20585 0.91736 0.93564 0.79444 1.86466 1.90017 1.42983 1.17649 1.21316 1.27447 0.91176 1.18104 0.91977 1.25724 0.96887 0.94852 0.99267 1.69976 1.43449 1.00321 1.41930 0.86463 0.80476 0.79098 0.80463 1.18094 1.16128 1.20546 1.24723 1.00581 0.79041 1.01189 1.21913 0.92166 0.99071 0.94913 1.19468 0.94685 0.90302 1.02859 1.68555 1.09432 1.28237 1.10324 1.23263 0.89798 0.98930 0.93213 1.21069 1.00021 0.89964 1.05316 0.87616 0.89523 0.86536 0.81040 0.82572 0.90435 0.87126 0.79114 0.91610 0.87172 0.89841 0.83215 0.87899 0.86033 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.79 9.76 71.24 0.70 -0.09 16 2 C 0.12 2.21 6.79 42.99 0.29 2.50 16 3 N -0.45 -10.74 10.37 -176.06 -1.83 -12.56 16 4 C 0.08 2.18 6.59 40.34 0.27 2.45 16 5 C -0.08 -1.96 9.95 22.29 0.22 -1.74 16 6 C -0.06 -1.56 9.49 22.27 0.21 -1.35 16 7 C -0.11 -3.83 5.87 -20.11 -0.12 -3.95 16 8 C 0.57 22.49 7.98 86.79 0.69 23.19 16 9 O -0.57 -25.11 17.07 -3.90 -0.07 -25.17 16 10 N -0.63 -25.08 3.60 -843.06 -3.03 -28.11 16 11 C 0.13 5.30 8.23 86.48 0.71 6.01 16 12 C 0.19 8.39 1.06 -10.88 -0.01 8.38 16 13 O -0.56 -25.69 13.35 -148.98 -1.99 -27.68 16 14 C -0.54 -28.03 9.19 25.60 0.24 -27.79 16 15 H 0.06 3.50 8.06 -2.91 -0.02 3.48 16 16 C 0.03 1.80 5.47 84.65 0.46 2.26 16 17 N -0.92 -51.91 13.96 21.45 0.30 -51.61 16 18 Si 0.91 38.11 24.31 68.60 1.67 39.78 16 19 H -0.26 -10.23 7.05 99.48 0.70 -9.53 16 20 H -0.24 -9.11 5.16 99.48 0.51 -8.60 16 21 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 22 C 0.07 2.63 4.66 86.44 0.40 3.03 16 23 C -0.06 -2.00 9.05 22.85 0.21 -1.79 16 24 C 0.05 1.51 6.59 40.27 0.27 1.78 16 25 N -0.45 -12.95 10.37 -176.29 -1.83 -14.78 16 26 C 0.11 2.16 6.79 42.99 0.29 2.46 16 27 C -0.11 -1.14 9.77 71.23 0.70 -0.45 16 28 H 0.11 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.12 0.19 5.92 -2.39 -0.01 0.18 16 31 H 0.17 3.12 8.06 -2.91 -0.02 3.10 16 32 H 0.16 3.98 7.63 -2.91 -0.02 3.96 16 33 H 0.08 3.20 8.14 -2.38 -0.02 3.18 16 34 H 0.11 4.22 8.09 -2.39 -0.02 4.20 16 35 H 0.36 15.35 3.57 -74.06 -0.26 15.08 16 36 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 37 H 0.11 4.10 7.99 -2.38 -0.02 4.09 16 38 H 0.08 3.16 5.60 -2.39 -0.01 3.15 16 39 H 0.15 5.07 4.03 -2.91 -0.01 5.06 16 40 H 0.10 0.85 8.14 -2.38 -0.02 0.83 16 41 H 0.12 0.39 5.91 -2.39 -0.01 0.38 16 42 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -71.18 343.46 -0.62 -71.80 By element: Atomic # 1 Polarization: 32.82 SS G_CDS: 0.63 Total: 33.45 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: 5.52 Total: 14.89 kcal Atomic # 7 Polarization: -100.68 SS G_CDS: -6.39 Total: -107.06 kcal Atomic # 8 Polarization: -50.80 SS G_CDS: -2.06 Total: -52.86 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 1.67 Total: 39.78 kcal Total: -71.18 -0.62 -71.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000526012573.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.759 kcal (2) G-P(sol) polarization free energy of solvation -71.178 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.801 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds