Wall clock time and date at job start Tue Mar 31 2020 14:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21329 * 120.00060 * 2 1 4 4 C 1.46614 * 120.00397 * 179.97438 * 2 1 3 5 5 C 1.38629 * 126.51544 * 264.49403 * 4 2 1 6 6 C 1.50696 * 125.82422 * 0.03832 * 5 4 2 7 7 N 1.34112 * 108.35103 * 180.02562 * 5 4 2 8 8 H 0.96997 * 125.35010 * 180.02562 * 7 5 4 9 9 C 1.37843 * 109.30590 * 0.02562 * 7 5 4 10 10 C 1.46797 * 125.80314 * 179.97438 * 9 7 5 11 11 O 1.21680 * 120.00031 * 179.97438 * 10 9 7 12 12 N 1.34770 * 120.00396 * 0.02562 * 10 9 7 13 13 C 1.39360 * 120.00611 * 175.24058 * 12 10 9 14 14 C 1.38629 * 119.58505 * 185.43719 * 13 12 10 15 15 C 1.40802 * 118.79023 * 179.77676 * 14 13 12 16 16 C 1.41547 * 120.98980 * 180.26436 * 15 14 13 17 17 H 1.08003 * 119.99522 * 202.42860 * 16 15 14 18 18 C 1.40028 * 120.00411 * 22.43405 * 16 15 14 19 19 N 1.30743 * 119.99945 * 16.63626 * 18 16 15 20 20 Si 1.86799 * 120.00028 * 196.63840 * 18 16 15 21 21 H 1.48501 * 109.47277 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46977 * 119.99914 * 20 18 16 23 23 H 1.48493 * 109.47051 * 239.99983 * 20 18 16 24 24 C 1.41180 * 118.01169 * 0.48908 * 15 14 13 25 25 C 1.37585 * 119.01693 * 359.75373 * 24 15 14 26 26 N 1.32083 * 121.11647 * 0.02562 * 25 24 15 27 27 C 1.36272 * 108.39421 * 359.97438 * 9 7 5 28 28 C 1.50697 * 126.51331 * 179.73822 * 27 9 7 29 29 H 1.08993 * 109.47197 * 244.70142 * 1 2 3 30 30 H 1.09003 * 109.47227 * 4.70555 * 1 2 3 31 31 H 1.09002 * 109.46614 * 124.70250 * 1 2 3 32 32 H 1.08995 * 109.47336 * 274.12141 * 6 5 4 33 33 H 1.09002 * 109.47420 * 34.11873 * 6 5 4 34 34 H 1.09003 * 109.47248 * 154.11584 * 6 5 4 35 35 H 0.97009 * 119.99816 * 355.23323 * 12 10 9 36 36 H 1.08004 * 120.60359 * 0.02562 * 14 13 12 37 37 H 0.96995 * 120.00043 * 179.97438 * 19 18 16 38 38 H 1.07997 * 120.49246 * 179.77483 * 24 15 14 39 39 H 1.08000 * 119.44079 * 180.02562 * 25 24 15 40 40 H 1.08994 * 109.47287 * 90.02466 * 28 27 9 41 41 H 1.08999 * 109.47259 * 210.03090 * 28 27 9 42 42 H 1.09008 * 109.46677 * 330.02830 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2402 -1.2697 0.0006 5 6 2.7452 -1.9301 1.1099 6 6 2.6352 -1.4650 2.5391 7 7 3.3482 -3.0535 0.6942 8 1 3.7859 -3.7011 1.2686 9 6 3.2482 -3.1436 -0.6777 10 6 3.7839 -4.2290 -1.5083 11 8 3.6339 -4.2019 -2.7156 12 7 4.4408 -5.2559 -0.9339 13 6 4.8624 -6.3345 -1.7091 14 6 5.4359 -7.4367 -1.0942 15 6 5.8516 -8.5190 -1.8931 16 6 6.4376 -9.6698 -1.3136 17 1 7.0669 -10.3138 -1.9100 18 6 6.2013 -9.9734 0.0328 19 7 5.2073 -9.4073 0.6659 20 14 7.3064 -11.1871 0.9244 21 1 8.3507 -11.6830 -0.0077 22 1 7.9536 -10.5121 2.0781 23 1 6.4940 -12.3305 1.4119 24 6 5.6708 -8.4201 -3.2898 25 6 5.0963 -7.2831 -3.8095 26 7 4.7155 -6.2910 -3.0251 27 6 2.5677 -2.0538 -1.1317 28 6 2.2333 -1.7394 -2.5671 29 1 -0.3633 -0.4391 0.9290 30 1 -0.3634 1.0242 -0.0843 31 1 -0.3632 -0.5851 -0.8449 32 1 3.4549 -0.7824 2.7632 33 1 1.6848 -0.9507 2.6817 34 1 2.6863 -2.3256 3.2061 35 1 4.6203 -5.2443 0.0194 36 1 5.5579 -7.4663 -0.0215 37 1 5.0434 -9.6179 1.5984 38 1 5.9785 -9.2252 -3.9406 39 1 4.9544 -7.2003 -4.8769 40 1 1.2673 -2.1769 -2.8193 41 1 2.1889 -0.6586 -2.7015 42 1 3.0018 -2.1554 -3.2187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532180728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:17 Heat of formation + Delta-G solvation = -0.365083 kcal Electronic energy + Delta-G solvation = -26696.812428 eV Core-core repulsion = 22835.421872 eV Total energy + Delta-G solvation = -3861.390557 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.72641 -39.46812 -38.82470 -37.64636 -34.55653 -33.94817 -32.94778 -32.06518 -30.62750 -30.05871 -28.86549 -27.88702 -26.37152 -26.05617 -23.20176 -22.13500 -21.81380 -20.49813 -19.30769 -18.74407 -18.19384 -17.71449 -16.12622 -15.72802 -15.64318 -15.31679 -15.16707 -14.84962 -14.70609 -14.28904 -14.17185 -13.97050 -13.70539 -13.38285 -13.16203 -13.06069 -12.84080 -12.68635 -12.53450 -12.45829 -12.30903 -12.22176 -12.12691 -11.54832 -11.50444 -11.27259 -10.97644 -10.36376 -10.22587 -9.96910 -9.88273 -9.54117 -9.44207 -8.85279 -8.16717 -8.08503 -7.82244 -7.12312 -6.89915 -4.69874 1.47094 1.78147 2.24909 2.66382 2.72135 2.88194 2.95406 3.00884 3.17454 3.45658 3.75848 3.77446 4.14802 4.49040 4.58833 4.77355 4.94911 4.96108 5.14398 5.15996 5.23564 5.30726 5.48080 5.53369 5.60819 5.67803 5.82996 5.89947 5.91452 6.07778 6.30368 6.45587 6.48583 6.62033 6.72626 6.80290 6.86260 7.02137 7.19152 7.29942 7.36433 7.38960 7.68386 7.83152 8.09494 8.33018 8.60641 8.65953 8.75334 9.60134 9.96330 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.002856 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.727563 B = 9802.610406 C =11080.735343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.440 3.560 3 O -0.456 6.456 4 C -0.261 4.261 5 C 0.090 3.910 6 C -0.094 4.094 7 N -0.525 5.525 8 H 0.419 0.581 9 C -0.045 4.045 10 C 0.572 3.428 11 O -0.462 6.462 12 N -0.657 5.657 13 C 0.337 3.663 14 C -0.245 4.245 15 C 0.142 3.858 16 C -0.452 4.452 17 H 0.083 0.917 18 C 0.078 3.922 19 N -0.787 5.787 20 Si 0.912 3.088 21 H -0.259 1.259 22 H -0.271 1.271 23 H -0.273 1.273 24 C -0.284 4.284 25 C 0.121 3.879 26 N -0.554 5.554 27 C -0.040 4.040 28 C -0.095 4.095 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.074 0.926 35 H 0.400 0.600 36 H 0.129 0.871 37 H 0.281 0.719 38 H 0.103 0.897 39 H 0.125 0.875 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.920 11.613 7.066 15.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C 0.315 3.685 3 O -0.330 6.330 4 C -0.269 4.269 5 C -0.031 4.031 6 C -0.151 4.151 7 N -0.120 5.120 8 H 0.257 0.743 9 C -0.156 4.156 10 C 0.357 3.643 11 O -0.331 6.331 12 N -0.302 5.302 13 C 0.113 3.887 14 C -0.271 4.271 15 C 0.134 3.866 16 C -0.483 4.483 17 H 0.102 0.898 18 C -0.142 4.142 19 N -0.413 5.413 20 Si 0.736 3.264 21 H -0.182 1.182 22 H -0.196 1.196 23 H -0.198 1.198 24 C -0.307 4.307 25 C -0.034 4.034 26 N -0.273 5.273 27 C -0.047 4.047 28 C -0.152 4.152 29 H 0.111 0.889 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.234 0.766 36 H 0.147 0.853 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.143 0.857 40 H 0.090 0.910 41 H 0.077 0.923 42 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.166 12.853 6.049 15.910 hybrid contribution 1.062 -1.916 1.833 2.857 sum -6.104 10.936 7.882 14.798 Atomic orbital electron populations 1.22272 0.93822 1.04527 1.04780 1.21671 0.91118 0.86518 0.69203 1.90555 1.72648 1.34453 1.35299 1.19790 1.13191 1.00785 0.93161 1.20556 0.98780 0.88167 0.95570 1.20486 1.03888 1.02027 0.88708 1.41600 1.43806 1.19416 1.07194 0.74267 1.20127 1.12469 1.01253 0.81796 1.17124 0.79091 0.80633 0.87441 1.90897 1.54969 1.74942 1.12304 1.43269 1.56689 1.19275 1.11005 1.18102 0.95675 0.86010 0.88913 1.21573 1.11219 0.93150 1.01114 1.17570 0.87112 0.91456 0.90494 1.19636 1.26373 1.07441 0.94820 0.89848 1.25979 0.94067 0.96405 0.97708 1.69783 1.22972 1.37012 1.11530 0.86199 0.80712 0.79955 0.79563 1.18203 1.19613 1.19824 1.21898 1.12235 1.00436 0.96178 1.21769 0.94804 0.89244 0.97534 1.67209 1.26661 1.30551 1.02892 1.19505 0.98058 0.91984 0.95188 1.20431 1.03193 1.00763 0.90780 0.88920 0.90053 0.88777 0.89930 0.89904 0.90695 0.76621 0.85298 0.90794 0.87897 0.85734 0.91001 0.92336 0.89150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.52 10.23 36.01 0.37 -1.16 16 2 C 0.44 5.14 6.50 -30.93 -0.20 4.94 16 3 O -0.46 -6.76 17.85 5.52 0.10 -6.66 16 4 C -0.26 -3.33 5.81 -105.11 -0.61 -3.94 16 5 C 0.09 0.98 7.22 -81.45 -0.59 0.39 16 6 C -0.09 -0.66 10.21 36.00 0.37 -0.29 16 7 N -0.52 -6.04 5.90 -5.56 -0.03 -6.08 16 8 H 0.42 3.68 8.14 -40.82 -0.33 3.35 16 9 C -0.04 -0.69 6.98 -82.41 -0.58 -1.27 16 10 C 0.57 10.96 7.75 -12.80 -0.10 10.86 16 11 O -0.46 -10.41 12.94 5.21 0.07 -10.34 16 12 N -0.66 -12.62 5.38 -12.65 -0.07 -12.68 16 13 C 0.34 7.99 7.41 -154.79 -1.15 6.85 16 14 C -0.25 -6.03 8.63 -38.47 -0.33 -6.36 16 15 C 0.14 3.64 5.62 -106.55 -0.60 3.04 16 16 C -0.45 -11.30 9.13 -37.65 -0.34 -11.64 16 17 H 0.08 2.01 7.90 -52.48 -0.41 1.59 16 18 C 0.08 1.81 5.22 -17.34 -0.09 1.72 16 19 N -0.79 -18.65 10.82 55.55 0.60 -18.05 16 20 Si 0.91 17.33 29.59 -169.99 -5.03 12.30 16 21 H -0.26 -4.91 7.11 56.52 0.40 -4.51 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 24 C -0.28 -6.82 9.90 -38.70 -0.38 -7.20 16 25 C 0.12 2.84 11.15 -17.68 -0.20 2.64 16 26 N -0.55 -13.86 7.85 -12.54 -0.10 -13.96 16 27 C -0.04 -0.59 6.22 -104.06 -0.65 -1.24 16 28 C -0.09 -1.33 9.63 36.00 0.35 -0.98 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.08 0.57 8.12 -51.93 -0.42 0.15 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.49 8.04 -51.93 -0.42 0.07 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.40 6.15 7.78 -40.82 -0.32 5.84 16 36 H 0.13 3.12 6.09 -52.48 -0.32 2.80 16 37 H 0.28 5.97 8.29 -40.82 -0.34 5.63 16 38 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 39 H 0.13 2.55 8.06 -52.49 -0.42 2.13 16 40 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.73 8.05 -51.93 -0.42 0.31 16 42 H 0.09 1.47 6.42 -51.92 -0.33 1.13 16 LS Contribution 364.89 15.07 5.50 5.50 Total: -1.00 -32.91 364.89 -8.76 -41.67 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.07 Total: 11.94 kcal Atomic # 6 Polarization: 1.09 SS G_CDS: -4.73 Total: -3.64 kcal Atomic # 7 Polarization: -51.17 SS G_CDS: 0.40 Total: -50.77 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: 0.17 Total: -17.00 kcal Atomic # 14 Polarization: 17.33 SS G_CDS: -5.03 Total: 12.30 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -32.91 -8.76 -41.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532180728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.309 kcal (2) G-P(sol) polarization free energy of solvation -32.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.674 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds