Wall clock time and date at job start Tue Mar 31 2020 14:54:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 O 1.21329 * 120.00060 * 2 1 4 4 C 1.46614 * 120.00397 * 179.97438 * 2 1 3 5 5 C 1.38629 * 126.51544 * 264.49403 * 4 2 1 6 6 C 1.50696 * 125.82422 * 0.03832 * 5 4 2 7 7 N 1.34112 * 108.35103 * 180.02562 * 5 4 2 8 8 H 0.96997 * 125.35010 * 180.02562 * 7 5 4 9 9 C 1.37843 * 109.30590 * 0.02562 * 7 5 4 10 10 C 1.46797 * 125.80314 * 179.97438 * 9 7 5 11 11 O 1.21680 * 120.00031 * 179.97438 * 10 9 7 12 12 N 1.34770 * 120.00396 * 0.02562 * 10 9 7 13 13 C 1.39360 * 120.00611 * 175.24058 * 12 10 9 14 14 C 1.38629 * 119.58505 * 185.43719 * 13 12 10 15 15 C 1.40802 * 118.79023 * 179.77676 * 14 13 12 16 16 C 1.41547 * 120.98980 * 180.26436 * 15 14 13 17 17 H 1.08003 * 119.99522 * 202.42860 * 16 15 14 18 18 C 1.40028 * 120.00411 * 22.43405 * 16 15 14 19 19 N 1.30743 * 119.99945 * 16.63626 * 18 16 15 20 20 Si 1.86799 * 120.00028 * 196.63840 * 18 16 15 21 21 H 1.48501 * 109.47277 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46977 * 119.99914 * 20 18 16 23 23 H 1.48493 * 109.47051 * 239.99983 * 20 18 16 24 24 C 1.41180 * 118.01169 * 0.48908 * 15 14 13 25 25 C 1.37585 * 119.01693 * 359.75373 * 24 15 14 26 26 N 1.32083 * 121.11647 * 0.02562 * 25 24 15 27 27 C 1.36272 * 108.39421 * 359.97438 * 9 7 5 28 28 C 1.50697 * 126.51331 * 179.73822 * 27 9 7 29 29 H 1.08993 * 109.47197 * 244.70142 * 1 2 3 30 30 H 1.09003 * 109.47227 * 4.70555 * 1 2 3 31 31 H 1.09002 * 109.46614 * 124.70250 * 1 2 3 32 32 H 1.08995 * 109.47336 * 274.12141 * 6 5 4 33 33 H 1.09002 * 109.47420 * 34.11873 * 6 5 4 34 34 H 1.09003 * 109.47248 * 154.11584 * 6 5 4 35 35 H 0.97009 * 119.99816 * 355.23323 * 12 10 9 36 36 H 1.08004 * 120.60359 * 0.02562 * 14 13 12 37 37 H 0.96995 * 120.00043 * 179.97438 * 19 18 16 38 38 H 1.07997 * 120.49246 * 179.77483 * 24 15 14 39 39 H 1.08000 * 119.44079 * 180.02562 * 25 24 15 40 40 H 1.08994 * 109.47287 * 90.02466 * 28 27 9 41 41 H 1.08999 * 109.47259 * 210.03090 * 28 27 9 42 42 H 1.09008 * 109.46677 * 330.02830 * 28 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1137 1.0507 0.0000 4 6 2.2402 -1.2697 0.0006 5 6 2.7452 -1.9301 1.1099 6 6 2.6352 -1.4650 2.5391 7 7 3.3482 -3.0535 0.6942 8 1 3.7859 -3.7011 1.2686 9 6 3.2482 -3.1436 -0.6777 10 6 3.7839 -4.2290 -1.5083 11 8 3.6339 -4.2019 -2.7156 12 7 4.4408 -5.2559 -0.9339 13 6 4.8624 -6.3345 -1.7091 14 6 5.4359 -7.4367 -1.0942 15 6 5.8516 -8.5190 -1.8931 16 6 6.4376 -9.6698 -1.3136 17 1 7.0669 -10.3138 -1.9100 18 6 6.2013 -9.9734 0.0328 19 7 5.2073 -9.4073 0.6659 20 14 7.3064 -11.1871 0.9244 21 1 8.3507 -11.6830 -0.0077 22 1 7.9536 -10.5121 2.0781 23 1 6.4940 -12.3305 1.4119 24 6 5.6708 -8.4201 -3.2898 25 6 5.0963 -7.2831 -3.8095 26 7 4.7155 -6.2910 -3.0251 27 6 2.5677 -2.0538 -1.1317 28 6 2.2333 -1.7394 -2.5671 29 1 -0.3633 -0.4391 0.9290 30 1 -0.3634 1.0242 -0.0843 31 1 -0.3632 -0.5851 -0.8449 32 1 3.4549 -0.7824 2.7632 33 1 1.6848 -0.9507 2.6817 34 1 2.6863 -2.3256 3.2061 35 1 4.6203 -5.2443 0.0194 36 1 5.5579 -7.4663 -0.0215 37 1 5.0434 -9.6179 1.5984 38 1 5.9785 -9.2252 -3.9406 39 1 4.9544 -7.2003 -4.8769 40 1 1.2673 -2.1769 -2.8193 41 1 2.1889 -0.6586 -2.7015 42 1 3.0018 -2.1554 -3.2187 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532180728.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:54:16 Heat of formation + Delta-G solvation = -20.323337 kcal Electronic energy + Delta-G solvation = -26697.677883 eV Core-core repulsion = 22835.421872 eV Total energy + Delta-G solvation = -3862.256011 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.78863 -41.03819 -39.90048 -39.28364 -36.24815 -35.65699 -34.04205 -33.00573 -32.46377 -30.88681 -30.44290 -28.83368 -27.97027 -27.49614 -24.41516 -23.89270 -23.08367 -22.02396 -20.58100 -19.82540 -19.49241 -19.29540 -17.74259 -17.06575 -16.77692 -16.72160 -16.35548 -16.08485 -16.02128 -15.79863 -15.59820 -15.26915 -15.05749 -14.58095 -14.38621 -14.37269 -14.22857 -13.95006 -13.74156 -13.28592 -13.24180 -13.17583 -13.00279 -12.96999 -12.93296 -12.69850 -12.52464 -12.09192 -11.92566 -11.58745 -11.20823 -11.16493 -10.84733 -9.98796 -9.88015 -9.65307 -9.24700 -8.87909 -8.67080 -6.59071 0.25111 0.85907 0.91486 0.97165 1.29327 1.40519 1.53654 1.56717 1.89278 2.01189 2.18468 2.29761 2.78673 3.27118 3.63551 3.72008 3.73222 3.97836 4.09758 4.22784 4.37180 4.45804 4.59844 4.66901 4.71163 4.72789 4.74945 4.78957 4.80791 4.90081 4.99170 5.02645 5.06314 5.14487 5.20286 5.29226 5.45038 5.52044 5.58311 5.69037 5.88599 6.10421 6.29764 6.42924 6.52117 6.52479 6.76229 6.80201 7.16996 7.78534 8.22653 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.018360 B = 0.002856 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.727563 B = 9802.610406 C =11080.735343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.445 3.555 3 O -0.494 6.494 4 C -0.285 4.285 5 C 0.118 3.882 6 C -0.096 4.096 7 N -0.514 5.514 8 H 0.432 0.568 9 C -0.074 4.074 10 C 0.571 3.429 11 O -0.504 6.504 12 N -0.650 5.650 13 C 0.334 3.666 14 C -0.261 4.261 15 C 0.113 3.887 16 C -0.480 4.480 17 H 0.084 0.916 18 C 0.041 3.959 19 N -0.808 5.808 20 Si 0.987 3.013 21 H -0.260 1.260 22 H -0.261 1.261 23 H -0.265 1.265 24 C -0.298 4.298 25 C 0.115 3.885 26 N -0.579 5.579 27 C -0.045 4.045 28 C -0.092 4.092 29 H 0.118 0.882 30 H 0.089 0.911 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.099 0.901 35 H 0.416 0.584 36 H 0.128 0.872 37 H 0.293 0.707 38 H 0.116 0.884 39 H 0.151 0.849 40 H 0.081 0.919 41 H 0.070 0.930 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.598 11.883 9.767 17.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.323 3.677 3 O -0.370 6.370 4 C -0.292 4.292 5 C -0.005 4.005 6 C -0.153 4.153 7 N -0.110 5.110 8 H 0.273 0.727 9 C -0.185 4.185 10 C 0.359 3.641 11 O -0.376 6.376 12 N -0.296 5.296 13 C 0.109 3.891 14 C -0.286 4.286 15 C 0.104 3.896 16 C -0.511 4.511 17 H 0.102 0.898 18 C -0.177 4.177 19 N -0.433 5.433 20 Si 0.807 3.193 21 H -0.183 1.183 22 H -0.185 1.185 23 H -0.190 1.190 24 C -0.322 4.322 25 C -0.039 4.039 26 N -0.299 5.299 27 C -0.053 4.053 28 C -0.149 4.149 29 H 0.137 0.863 30 H 0.108 0.892 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.252 0.748 36 H 0.146 0.854 37 H 0.104 0.896 38 H 0.134 0.866 39 H 0.168 0.832 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -7.855 13.121 8.780 17.634 hybrid contribution 1.210 -1.942 1.046 2.516 sum -6.645 11.179 9.826 16.299 Atomic orbital electron populations 1.22294 0.90520 1.05585 1.06402 1.22120 0.92724 0.85287 0.67565 1.90550 1.73704 1.35391 1.37365 1.20054 1.14558 1.01577 0.92977 1.21253 0.95535 0.86589 0.97088 1.20721 1.05142 1.03322 0.86111 1.41549 1.43568 1.20034 1.05878 0.72745 1.19499 1.14902 1.00826 0.83258 1.17582 0.78172 0.80858 0.87441 1.90864 1.56535 1.75993 1.14243 1.43214 1.56472 1.18394 1.11567 1.18337 0.94902 0.86908 0.88952 1.21560 1.12519 0.93573 1.00986 1.18005 0.87757 0.92287 0.91518 1.19905 1.27139 1.07735 0.96289 0.89825 1.26817 0.95060 0.98131 0.97701 1.69798 1.23574 1.37572 1.12389 0.85076 0.78491 0.77519 0.78176 1.18323 1.18513 1.19009 1.22082 1.12876 1.01195 0.96075 1.22213 0.94046 0.88847 0.98769 1.67332 1.27674 1.31264 1.03657 1.19734 0.97518 0.92097 0.95934 1.20378 1.02720 1.01389 0.90382 0.86329 0.89206 0.87953 0.89116 0.88149 0.88207 0.74752 0.85390 0.89571 0.86583 0.83226 0.90012 0.91086 0.91861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.41 10.23 71.24 0.73 -1.68 16 2 C 0.45 9.56 6.50 27.87 0.18 9.74 16 3 O -0.49 -14.05 17.85 -3.18 -0.06 -14.11 16 4 C -0.28 -6.78 5.81 -20.18 -0.12 -6.89 16 5 C 0.12 2.27 7.22 42.30 0.31 2.57 16 6 C -0.10 -0.97 10.21 71.23 0.73 -0.25 16 7 N -0.51 -11.01 5.90 -171.49 -1.01 -12.02 16 8 H 0.43 6.77 8.14 -92.71 -0.75 6.02 16 9 C -0.07 -2.26 6.98 39.98 0.28 -1.98 16 10 C 0.57 22.50 7.75 86.48 0.67 23.17 16 11 O -0.50 -23.70 12.94 -4.29 -0.06 -23.75 16 12 N -0.65 -25.50 5.38 -312.17 -1.68 -27.18 16 13 C 0.33 16.30 7.41 132.79 0.98 17.29 16 14 C -0.26 -13.18 8.63 22.99 0.20 -12.98 16 15 C 0.11 5.93 5.62 -21.11 -0.12 5.81 16 16 C -0.48 -24.36 9.13 23.52 0.21 -24.14 16 17 H 0.08 4.08 7.90 -2.91 -0.02 4.06 16 18 C 0.04 1.87 5.22 85.29 0.44 2.31 16 19 N -0.81 -38.00 10.82 21.84 0.24 -37.77 16 20 Si 0.99 34.67 29.59 68.60 2.03 36.70 16 21 H -0.26 -9.10 7.11 99.48 0.71 -8.39 16 22 H -0.26 -8.68 7.11 99.48 0.71 -7.97 16 23 H -0.27 -8.96 7.11 99.48 0.71 -8.25 16 24 C -0.30 -14.72 9.90 22.84 0.23 -14.49 16 25 C 0.11 5.53 11.15 84.50 0.94 6.48 16 26 N -0.58 -29.86 7.85 -193.59 -1.52 -31.38 16 27 C -0.04 -1.31 6.22 -19.50 -0.12 -1.43 16 28 C -0.09 -2.62 9.63 71.23 0.69 -1.94 16 29 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.09 1.01 8.12 -2.39 -0.02 1.00 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 0.75 8.04 -2.39 -0.02 0.73 16 34 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.42 12.89 7.78 -92.70 -0.72 12.17 16 36 H 0.13 6.33 6.09 -2.91 -0.02 6.32 16 37 H 0.29 12.15 8.29 -92.71 -0.77 11.38 16 38 H 0.12 5.22 8.06 -2.91 -0.02 5.19 16 39 H 0.15 6.21 8.06 -2.91 -0.02 6.18 16 40 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.07 1.78 8.05 -2.39 -0.02 1.76 16 42 H 0.06 2.17 6.42 -2.38 -0.02 2.15 16 Total: -1.00 -73.80 364.89 3.79 -70.01 By element: Atomic # 1 Polarization: 38.31 SS G_CDS: -0.38 Total: 37.93 kcal Atomic # 6 Polarization: -4.65 SS G_CDS: 6.23 Total: 1.58 kcal Atomic # 7 Polarization: -104.38 SS G_CDS: -3.97 Total: -108.35 kcal Atomic # 8 Polarization: -37.75 SS G_CDS: -0.11 Total: -37.86 kcal Atomic # 14 Polarization: 34.67 SS G_CDS: 2.03 Total: 36.70 kcal Total: -73.80 3.79 -70.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532180728.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.683 kcal (2) G-P(sol) polarization free energy of solvation -73.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds