Wall clock time and date at job start Tue Mar 31 2020 15:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21252 * 120.00213 * 2 1 4 4 C 1.47189 * 120.00000 * 179.97438 * 2 1 3 5 5 C 1.39972 * 120.09924 * 359.97438 * 4 2 1 6 6 C 1.37994 * 120.12305 * 180.02562 * 5 4 2 7 7 C 1.38142 * 120.32366 * 359.71558 * 6 5 4 8 8 C 1.39717 * 120.19981 * 0.55633 * 7 6 5 9 9 C 1.47824 * 120.06499 * 179.71862 * 8 7 6 10 10 O 1.21563 * 120.00224 * 179.72959 * 9 8 7 11 11 N 1.34777 * 119.99493 * 359.72659 * 9 8 7 12 12 C 1.39387 * 119.99684 * 179.71957 * 11 9 8 13 13 C 1.36143 * 126.26339 * 359.97438 * 12 11 9 14 14 C 1.39729 * 107.86059 * 179.84093 * 13 12 11 15 15 C 1.50699 * 125.78076 * 180.16070 * 14 13 12 16 16 N 1.30836 * 108.43915 * 0.42033 * 14 13 12 17 17 N 1.35805 * 126.26198 * 180.27302 * 12 11 9 18 18 C 1.46496 * 126.09572 * 359.97438 * 17 12 11 19 19 C 1.50703 * 109.47751 * 89.99298 * 18 17 12 20 20 H 1.07997 * 119.99468 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00026 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99898 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99455 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47340 * 90.00009 * 23 21 19 25 25 H 1.48502 * 109.46789 * 210.00227 * 23 21 19 26 26 H 1.48502 * 109.47565 * 329.99995 * 23 21 19 27 27 C 1.39297 * 119.87532 * 359.45039 * 8 7 6 28 28 H 1.09004 * 109.47170 * 240.00073 * 1 2 3 29 29 H 1.09004 * 109.46850 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47643 * 120.00119 * 1 2 3 31 31 H 1.08005 * 119.94172 * 0.03773 * 5 4 2 32 32 H 1.07991 * 119.83700 * 180.02562 * 6 5 4 33 33 H 1.07996 * 119.89707 * 180.28405 * 7 6 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.08002 * 126.07003 * 359.97438 * 13 12 11 36 36 H 1.09002 * 109.47398 * 270.27110 * 15 14 13 37 37 H 1.09000 * 109.46797 * 30.27901 * 15 14 13 38 38 H 1.09005 * 109.47225 * 150.27622 * 15 14 13 39 39 H 1.09004 * 109.47325 * 209.99758 * 18 17 12 40 40 H 1.09000 * 109.46993 * 329.99156 * 18 17 12 41 41 H 0.97002 * 119.99146 * 180.02562 * 22 21 19 42 42 H 1.07998 * 120.15843 * 180.24976 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5451 -2.4881 0.0017 6 6 2.2346 -3.6834 0.0027 7 6 3.6160 -3.6918 -0.0032 8 6 4.3261 -2.4886 0.0014 9 6 5.8043 -2.5011 0.0014 10 8 6.4211 -1.4535 0.0004 11 7 6.4682 -3.6740 0.0024 12 6 7.8620 -3.6858 -0.0036 13 6 8.6766 -2.5950 -0.0112 14 6 9.9986 -3.0473 -0.0115 15 6 11.2281 -2.1758 -0.0154 16 7 9.9884 -4.3556 -0.0134 17 7 8.6559 -4.7876 -0.0085 18 6 8.2001 -6.1799 -0.0080 19 6 8.0370 -6.6557 -1.4286 20 1 8.2519 -5.9879 -2.2497 21 6 7.6135 -7.9436 -1.6799 22 7 7.3514 -8.7565 -0.6800 23 14 7.4107 -8.5330 -3.4408 24 1 8.6873 -9.1253 -3.9148 25 1 6.3377 -9.5579 -3.4992 26 1 7.0458 -7.3844 -4.3085 27 6 3.6386 -1.2771 0.0004 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 0.4651 -2.4889 0.0015 32 1 1.6916 -4.6169 0.0031 33 1 4.1486 -4.6313 -0.0070 34 1 5.9761 -4.5099 0.0028 35 1 8.3575 -1.5632 -0.0141 36 1 11.5205 -1.9646 -1.0440 37 1 11.0118 -1.2403 0.5004 38 1 12.0412 -2.6924 0.4947 39 1 8.9353 -6.8028 0.5017 40 1 7.2437 -6.2489 0.5103 41 1 7.0538 -9.6626 -0.8569 42 1 4.1830 -0.3444 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000532446663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:55 Heat of formation + Delta-G solvation = 29.621307 kcal Electronic energy + Delta-G solvation = -26538.651066 eV Core-core repulsion = 22678.560816 eV Total energy + Delta-G solvation = -3860.090249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.03373 -40.29630 -39.28596 -37.94709 -34.87821 -33.83201 -32.56649 -32.04375 -31.40203 -29.95781 -29.10782 -28.12742 -26.05978 -24.58500 -23.84937 -22.81304 -21.60418 -20.45336 -19.84083 -19.01076 -17.79114 -16.92305 -16.56078 -16.42839 -16.04193 -15.54036 -15.40897 -15.16755 -15.10515 -14.54790 -14.27405 -14.09003 -14.05087 -13.98654 -12.92290 -12.90974 -12.78215 -12.71761 -12.53592 -12.45155 -12.28984 -12.06384 -11.81423 -11.62827 -11.57987 -11.11755 -10.93052 -10.45486 -10.38140 -10.18540 -9.96268 -9.85002 -9.58111 -9.38837 -9.36251 -8.76409 -7.93888 -7.47808 -6.37749 -4.46374 0.20789 0.71915 1.93340 2.43442 2.70157 3.05583 3.13489 3.20702 3.25070 3.47620 3.63687 3.72643 3.76801 4.20551 4.33872 4.48605 4.60274 4.72657 4.80786 4.91069 4.95500 4.99632 5.09079 5.28870 5.34046 5.54593 5.60095 5.61863 5.88422 5.93006 5.97380 6.03851 6.13951 6.14884 6.24744 6.37723 6.42175 6.64347 6.79294 7.00656 7.18654 7.46820 7.53260 7.58057 7.75334 7.85440 8.21482 8.57851 8.67268 9.21483 10.69228 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.003579 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.499141 B = 7822.300663 C =10007.565893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.395 3.605 3 O -0.453 6.453 4 C -0.184 4.184 5 C -0.049 4.049 6 C -0.135 4.135 7 C -0.051 4.051 8 C -0.138 4.138 9 C 0.563 3.437 10 O -0.507 6.507 11 N -0.633 5.633 12 C 0.299 3.701 13 C -0.291 4.291 14 C 0.050 3.950 15 C -0.062 4.062 16 N -0.282 5.282 17 N -0.346 5.346 18 C 0.257 3.743 19 C -0.541 4.541 20 H 0.065 0.935 21 C 0.067 3.933 22 N -0.890 5.890 23 Si 0.905 3.095 24 H -0.276 1.276 25 H -0.283 1.283 26 H -0.272 1.272 27 C 0.000 4.000 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.140 0.860 33 H 0.137 0.863 34 H 0.415 0.585 35 H 0.162 0.838 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.057 0.943 40 H 0.043 0.957 41 H 0.269 0.731 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.671 10.855 2.792 18.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.256 4.256 2 C 0.273 3.727 3 O -0.328 6.328 4 C -0.185 4.185 5 C -0.067 4.067 6 C -0.153 4.153 7 C -0.070 4.070 8 C -0.141 4.141 9 C 0.351 3.649 10 O -0.382 6.382 11 N -0.280 5.280 12 C 0.077 3.923 13 C -0.322 4.322 14 C -0.114 4.114 15 C -0.121 4.121 16 N -0.107 5.107 17 N -0.132 5.132 18 C 0.139 3.861 19 C -0.580 4.580 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.732 3.268 24 H -0.202 1.202 25 H -0.208 1.208 26 H -0.197 1.197 27 C -0.019 4.019 28 H 0.113 0.887 29 H 0.104 0.896 30 H 0.113 0.887 31 H 0.155 0.845 32 H 0.158 0.842 33 H 0.155 0.845 34 H 0.253 0.747 35 H 0.180 0.820 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.075 0.925 40 H 0.061 0.939 41 H 0.079 0.921 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.358 10.761 2.846 17.388 hybrid contribution -1.021 -0.695 -0.988 1.581 sum -14.379 10.066 1.858 17.650 Atomic orbital electron populations 1.22249 0.93440 1.05333 1.04608 1.22481 0.91716 0.87397 0.71130 1.90576 1.72142 1.34170 1.35897 1.20482 0.94087 0.95234 1.08706 1.21652 1.00402 0.91329 0.93355 1.21135 0.93835 0.98674 1.01664 1.21767 0.95011 0.97576 0.92639 1.19758 0.92343 0.94385 1.07598 1.18031 0.86938 0.83063 0.76895 1.90729 1.68270 1.31395 1.47785 1.42593 1.03680 1.10129 1.71608 1.17978 0.81599 0.89527 1.03192 1.21288 0.90662 0.98926 1.21359 1.22024 0.95523 0.92000 1.01888 1.20028 0.92826 0.97068 1.02198 1.77337 0.96108 1.11810 1.25463 1.49502 1.01943 1.06543 1.55204 1.19618 0.95680 0.71885 0.98898 1.21358 1.46955 0.98287 0.91368 0.91669 1.24931 0.94551 0.95974 0.98187 1.69918 1.44592 1.07187 1.31040 0.86362 0.78200 0.78597 0.83617 1.20158 1.20816 1.19661 1.21534 0.92854 0.98258 0.89265 0.88713 0.89575 0.88698 0.84457 0.84245 0.84478 0.74727 0.82046 0.91277 0.91100 0.91522 0.92464 0.93931 0.92144 0.83319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.01 8.93 36.00 0.32 -0.69 16 2 C 0.40 3.78 7.23 -30.68 -0.22 3.56 16 3 O -0.45 -6.14 17.07 5.58 0.10 -6.04 16 4 C -0.18 -1.82 5.86 -105.12 -0.62 -2.44 16 5 C -0.05 -0.35 9.47 -39.02 -0.37 -0.72 16 6 C -0.14 -1.09 10.01 -39.71 -0.40 -1.48 16 7 C -0.05 -0.54 9.54 -39.06 -0.37 -0.91 16 8 C -0.14 -1.80 5.87 -105.03 -0.62 -2.42 16 9 C 0.56 9.38 7.74 -12.34 -0.10 9.29 16 10 O -0.51 -9.68 13.46 5.31 0.07 -9.61 16 11 N -0.63 -11.25 5.36 -12.21 -0.07 -11.31 16 12 C 0.30 6.37 7.68 -152.74 -1.17 5.19 16 13 C -0.29 -6.05 9.58 -39.78 -0.38 -6.43 16 14 C 0.05 1.03 7.20 -82.46 -0.59 0.43 16 15 C -0.06 -0.94 10.44 36.01 0.38 -0.57 16 16 N -0.28 -6.59 12.56 33.64 0.42 -6.16 16 17 N -0.35 -8.11 3.62 -61.45 -0.22 -8.34 16 18 C 0.26 6.34 6.02 -5.19 -0.03 6.31 16 19 C -0.54 -14.35 9.39 -34.44 -0.32 -14.67 16 20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.76 5.46 -17.82 -0.10 1.66 16 22 N -0.89 -23.78 13.29 55.43 0.74 -23.04 16 23 Si 0.91 20.32 29.54 -169.99 -5.02 15.30 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 27 C 0.00 0.00 9.14 -38.69 -0.35 -0.36 16 28 H 0.09 0.30 8.08 -51.93 -0.42 -0.12 16 29 H 0.09 0.45 8.12 -51.93 -0.42 0.03 16 30 H 0.09 0.31 8.08 -51.93 -0.42 -0.11 16 31 H 0.14 0.50 7.03 -52.48 -0.37 0.13 16 32 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 33 H 0.14 1.36 6.39 -52.49 -0.34 1.03 16 34 H 0.41 6.65 6.01 -40.82 -0.25 6.41 16 35 H 0.16 3.28 5.83 -52.49 -0.31 2.98 16 36 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 40 H 0.04 1.01 7.52 -51.93 -0.39 0.61 16 41 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 42 H 0.15 2.08 7.23 -52.49 -0.38 1.70 16 LS Contribution 366.82 15.07 5.53 5.53 Total: -1.00 -33.38 366.82 -8.35 -41.73 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: -4.95 Total: 6.19 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -4.95 Total: -4.24 kcal Atomic # 7 Polarization: -49.73 SS G_CDS: 0.87 Total: -48.86 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: 0.17 Total: -15.65 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.38 -8.35 -41.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532446663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.351 kcal (2) G-P(sol) polarization free energy of solvation -33.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.730 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds