Wall clock time and date at job start Tue Mar 31 2020 15:04:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21252 * 120.00213 * 2 1 4 4 C 1.47189 * 120.00000 * 179.97438 * 2 1 3 5 5 C 1.39972 * 120.09924 * 359.97438 * 4 2 1 6 6 C 1.37994 * 120.12305 * 180.02562 * 5 4 2 7 7 C 1.38142 * 120.32366 * 359.71558 * 6 5 4 8 8 C 1.39717 * 120.19981 * 0.55633 * 7 6 5 9 9 C 1.47824 * 120.06499 * 179.71862 * 8 7 6 10 10 O 1.21563 * 120.00224 * 179.72959 * 9 8 7 11 11 N 1.34777 * 119.99493 * 359.72659 * 9 8 7 12 12 C 1.39387 * 119.99684 * 179.71957 * 11 9 8 13 13 C 1.36143 * 126.26339 * 359.97438 * 12 11 9 14 14 C 1.39729 * 107.86059 * 179.84093 * 13 12 11 15 15 C 1.50699 * 125.78076 * 180.16070 * 14 13 12 16 16 N 1.30836 * 108.43915 * 0.42033 * 14 13 12 17 17 N 1.35805 * 126.26198 * 180.27302 * 12 11 9 18 18 C 1.46496 * 126.09572 * 359.97438 * 17 12 11 19 19 C 1.50703 * 109.47751 * 89.99298 * 18 17 12 20 20 H 1.07997 * 119.99468 * 0.02562 * 19 18 17 21 21 C 1.37877 * 120.00026 * 180.02562 * 19 18 17 22 22 N 1.31510 * 119.99898 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99455 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.47340 * 90.00009 * 23 21 19 25 25 H 1.48502 * 109.46789 * 210.00227 * 23 21 19 26 26 H 1.48502 * 109.47565 * 329.99995 * 23 21 19 27 27 C 1.39297 * 119.87532 * 359.45039 * 8 7 6 28 28 H 1.09004 * 109.47170 * 240.00073 * 1 2 3 29 29 H 1.09004 * 109.46850 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47643 * 120.00119 * 1 2 3 31 31 H 1.08005 * 119.94172 * 0.03773 * 5 4 2 32 32 H 1.07991 * 119.83700 * 180.02562 * 6 5 4 33 33 H 1.07996 * 119.89707 * 180.28405 * 7 6 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 35 35 H 1.08002 * 126.07003 * 359.97438 * 13 12 11 36 36 H 1.09002 * 109.47398 * 270.27110 * 15 14 13 37 37 H 1.09000 * 109.46797 * 30.27901 * 15 14 13 38 38 H 1.09005 * 109.47225 * 150.27622 * 15 14 13 39 39 H 1.09004 * 109.47325 * 209.99758 * 18 17 12 40 40 H 1.09000 * 109.46993 * 329.99156 * 18 17 12 41 41 H 0.97002 * 119.99146 * 180.02562 * 22 21 19 42 42 H 1.07998 * 120.15843 * 180.24976 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1132 1.0500 0.0000 4 6 2.2429 -1.2747 0.0006 5 6 1.5451 -2.4881 0.0017 6 6 2.2346 -3.6834 0.0027 7 6 3.6160 -3.6918 -0.0032 8 6 4.3261 -2.4886 0.0014 9 6 5.8043 -2.5011 0.0014 10 8 6.4211 -1.4535 0.0004 11 7 6.4682 -3.6740 0.0024 12 6 7.8620 -3.6858 -0.0036 13 6 8.6766 -2.5950 -0.0112 14 6 9.9986 -3.0473 -0.0115 15 6 11.2281 -2.1758 -0.0154 16 7 9.9884 -4.3556 -0.0134 17 7 8.6559 -4.7876 -0.0085 18 6 8.2001 -6.1799 -0.0080 19 6 8.0370 -6.6557 -1.4286 20 1 8.2519 -5.9879 -2.2497 21 6 7.6135 -7.9436 -1.6799 22 7 7.3514 -8.7565 -0.6800 23 14 7.4107 -8.5330 -3.4408 24 1 8.6873 -9.1253 -3.9148 25 1 6.3377 -9.5579 -3.4992 26 1 7.0458 -7.3844 -4.3085 27 6 3.6386 -1.2771 0.0004 28 1 -0.3634 -0.5138 0.8900 29 1 -0.3633 1.0277 0.0005 30 1 -0.3634 -0.5138 -0.8899 31 1 0.4651 -2.4889 0.0015 32 1 1.6916 -4.6169 0.0031 33 1 4.1486 -4.6313 -0.0070 34 1 5.9761 -4.5099 0.0028 35 1 8.3575 -1.5632 -0.0141 36 1 11.5205 -1.9646 -1.0440 37 1 11.0118 -1.2403 0.5004 38 1 12.0412 -2.6924 0.4947 39 1 8.9353 -6.8028 0.5017 40 1 7.2437 -6.2489 0.5103 41 1 7.0538 -9.6626 -0.8569 42 1 4.1830 -0.3444 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000532446663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:04:54 Heat of formation + Delta-G solvation = 9.262155 kcal Electronic energy + Delta-G solvation = -26539.533905 eV Core-core repulsion = 22678.560816 eV Total energy + Delta-G solvation = -3860.973088 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.53329 -41.35765 -40.45492 -38.90161 -36.41617 -35.69035 -33.91358 -33.31922 -32.22002 -30.93160 -30.47673 -29.58705 -27.83451 -25.60376 -24.91834 -24.47998 -22.67495 -21.63238 -21.38402 -20.23339 -18.99840 -18.78840 -18.13099 -17.49412 -16.85668 -16.77180 -16.66657 -16.42181 -16.12779 -16.02906 -15.63595 -15.48501 -15.09164 -14.83024 -14.59451 -14.45079 -14.08376 -13.75064 -13.53263 -13.43123 -13.20267 -13.14912 -13.00513 -12.97073 -12.91788 -12.73509 -12.41586 -12.30945 -12.02480 -11.72537 -11.56542 -11.13722 -10.84304 -10.77762 -10.22958 -10.16545 -9.67647 -9.14000 -8.37756 -6.55432 -0.59062 -0.19344 0.84237 1.20440 1.28609 1.35576 1.38730 1.48825 1.71393 2.02392 2.10552 2.33326 2.73172 2.92469 2.99618 3.28771 3.75191 3.77185 3.87338 3.98216 4.13943 4.14685 4.26846 4.44262 4.56777 4.67533 4.73600 4.73734 4.76644 4.81757 4.82465 4.86908 4.90198 5.06812 5.13682 5.15957 5.17323 5.22989 5.33653 5.49590 5.68106 5.74611 5.90491 6.04513 6.19574 6.49960 6.53896 6.80334 6.95363 7.16623 8.68824 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010343 B = 0.003579 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.499141 B = 7822.300663 C =10007.565893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.394 3.606 3 O -0.507 6.507 4 C -0.192 4.192 5 C -0.019 4.019 6 C -0.126 4.126 7 C -0.055 4.055 8 C -0.158 4.158 9 C 0.562 3.438 10 O -0.539 6.539 11 N -0.631 5.631 12 C 0.297 3.703 13 C -0.306 4.306 14 C 0.059 3.941 15 C -0.061 4.061 16 N -0.325 5.325 17 N -0.367 5.367 18 C 0.272 3.728 19 C -0.559 4.559 20 H 0.045 0.955 21 C 0.031 3.969 22 N -0.911 5.911 23 Si 0.968 3.032 24 H -0.278 1.278 25 H -0.265 1.265 26 H -0.273 1.273 27 C -0.019 4.019 28 H 0.125 0.875 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.190 0.810 32 H 0.177 0.823 33 H 0.140 0.860 34 H 0.421 0.579 35 H 0.165 0.835 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.077 0.923 39 H 0.029 0.971 40 H 0.049 0.951 41 H 0.276 0.724 42 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.060 10.102 2.144 20.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C 0.276 3.724 3 O -0.386 6.386 4 C -0.193 4.193 5 C -0.037 4.037 6 C -0.144 4.144 7 C -0.074 4.074 8 C -0.161 4.161 9 C 0.352 3.648 10 O -0.416 6.416 11 N -0.279 5.279 12 C 0.075 3.925 13 C -0.338 4.338 14 C -0.106 4.106 15 C -0.119 4.119 16 N -0.149 5.149 17 N -0.153 5.153 18 C 0.153 3.847 19 C -0.597 4.597 20 H 0.064 0.936 21 C -0.171 4.171 22 N -0.548 5.548 23 Si 0.792 3.208 24 H -0.204 1.204 25 H -0.189 1.189 26 H -0.197 1.197 27 C -0.039 4.039 28 H 0.143 0.857 29 H 0.101 0.899 30 H 0.142 0.858 31 H 0.207 0.793 32 H 0.195 0.805 33 H 0.157 0.843 34 H 0.261 0.739 35 H 0.183 0.817 36 H 0.104 0.896 37 H 0.113 0.887 38 H 0.096 0.904 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.085 0.915 42 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -16.779 9.992 2.211 19.653 hybrid contribution -0.042 -0.407 -0.746 0.851 sum -16.820 9.585 1.465 19.415 Atomic orbital electron populations 1.22312 0.89058 1.06217 1.07231 1.23251 0.93929 0.86251 0.69005 1.90571 1.73591 1.35791 1.38666 1.20732 0.92840 0.97066 1.08710 1.22196 1.02731 0.89393 0.89344 1.21595 0.92487 1.00616 0.99656 1.21925 0.96580 0.96389 0.92512 1.19475 0.89804 0.95841 1.11009 1.18738 0.88550 0.82069 0.75394 1.90687 1.69365 1.32303 1.49263 1.42716 1.02376 1.11034 1.71759 1.18340 0.83105 0.89072 1.02008 1.21486 0.91150 0.98953 1.22173 1.22867 0.97149 0.91526 0.99073 1.20235 0.90812 0.97105 1.03770 1.77283 0.96418 1.13411 1.27834 1.49347 1.02547 1.06373 1.57017 1.19262 0.94953 0.72534 0.97911 1.21395 1.48048 0.98731 0.91520 0.93630 1.25642 0.93770 0.95693 1.02002 1.69983 1.44450 1.07617 1.32796 0.85413 0.78369 0.78226 0.78815 1.20367 1.18926 1.19745 1.21430 0.94540 0.96922 0.90987 0.85705 0.89870 0.85799 0.79272 0.80535 0.84270 0.73943 0.81745 0.89628 0.88706 0.90407 0.95291 0.93309 0.91502 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.16 8.93 71.23 0.64 -0.52 16 2 C 0.39 6.98 7.23 28.04 0.20 7.18 16 3 O -0.51 -14.22 17.07 -2.94 -0.05 -14.27 16 4 C -0.19 -3.47 5.86 -20.18 -0.12 -3.59 16 5 C -0.02 -0.18 9.47 22.63 0.21 0.03 16 6 C -0.13 -1.50 10.01 22.19 0.22 -1.27 16 7 C -0.06 -1.10 9.54 22.60 0.22 -0.88 16 8 C -0.16 -4.26 5.87 -20.13 -0.12 -4.38 16 9 C 0.56 19.82 7.74 86.78 0.67 20.49 16 10 O -0.54 -22.03 13.46 -3.91 -0.05 -22.09 16 11 N -0.63 -23.50 5.36 -310.80 -1.67 -25.16 16 12 C 0.30 13.22 7.68 131.18 1.01 14.23 16 13 C -0.31 -13.22 9.58 22.14 0.21 -13.00 16 14 C 0.06 2.46 7.20 43.07 0.31 2.77 16 15 C -0.06 -1.78 10.44 71.24 0.74 -1.04 16 16 N -0.32 -15.72 12.56 -47.47 -0.60 -16.32 16 17 N -0.37 -17.99 3.62 -348.32 -1.26 -19.25 16 18 C 0.27 14.01 6.02 85.63 0.52 14.52 16 19 C -0.56 -30.41 9.39 25.60 0.24 -30.17 16 20 H 0.05 2.62 7.81 -2.91 -0.02 2.59 16 21 C 0.03 1.62 5.46 84.66 0.46 2.08 16 22 N -0.91 -48.64 13.29 21.45 0.28 -48.36 16 23 Si 0.97 41.34 29.54 68.60 2.03 43.37 16 24 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 25 H -0.26 -10.51 7.11 99.48 0.71 -9.80 16 26 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 27 C -0.02 -0.51 9.14 22.85 0.21 -0.30 16 28 H 0.12 0.07 8.08 -2.39 -0.02 0.05 16 29 H 0.08 0.62 8.12 -2.38 -0.02 0.60 16 30 H 0.12 0.10 8.08 -2.39 -0.02 0.08 16 31 H 0.19 -0.06 7.03 -2.91 -0.02 -0.08 16 32 H 0.18 0.90 8.06 -2.92 -0.02 0.88 16 33 H 0.14 2.65 6.39 -2.91 -0.02 2.63 16 34 H 0.42 14.09 6.01 -92.71 -0.56 13.53 16 35 H 0.17 6.98 5.83 -2.91 -0.02 6.96 16 36 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 37 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 38 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.03 1.63 8.14 -2.38 -0.02 1.61 16 40 H 0.05 2.40 7.52 -2.39 -0.02 2.38 16 41 H 0.28 13.69 8.31 -92.71 -0.77 12.92 16 42 H 0.12 3.75 7.23 -2.91 -0.02 3.73 16 Total: -1.00 -78.18 366.82 4.82 -73.35 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: 0.52 Total: 22.57 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 5.63 Total: 6.15 kcal Atomic # 7 Polarization: -105.85 SS G_CDS: -3.24 Total: -109.09 kcal Atomic # 8 Polarization: -36.25 SS G_CDS: -0.10 Total: -36.35 kcal Atomic # 14 Polarization: 41.34 SS G_CDS: 2.03 Total: 43.37 kcal Total: -78.18 4.82 -73.35 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000532446663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.617 kcal (2) G-P(sol) polarization free energy of solvation -78.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds