Wall clock time and date at job start Tue Mar 31 2020 14:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35038 * 125.53343 * 2 1 4 4 C 1.41127 * 108.24100 * 179.97438 * 3 2 1 5 5 N 1.33014 * 126.37656 * 179.97438 * 4 3 2 6 6 C 1.33785 * 119.99600 * 0.02562 * 5 4 3 7 7 O 1.21888 * 120.00155 * 359.97438 * 6 5 4 8 8 C 1.47926 * 120.00097 * 180.02562 * 6 5 4 9 9 C 1.39647 * 120.25054 * 359.71685 * 8 6 5 10 10 C 1.37514 * 120.20524 * 179.97438 * 9 8 6 11 11 C 1.39555 * 120.42182 * 0.56338 * 10 9 8 12 12 C 1.39150 * 119.08883 * 359.39306 * 11 10 9 13 13 C 1.37360 * 120.92482 * 0.43603 * 12 11 10 14 14 C 1.51669 * 107.00284 * 180.69694 * 12 11 10 15 15 C 1.54694 * 101.90004 * 15.49308 * 14 12 11 16 16 O 1.36025 * 129.73314 * 179.07803 * 11 10 9 17 17 N 1.37417 * 107.25456 * 0.22643 * 4 3 2 18 18 H 0.96998 * 126.36509 * 179.75366 * 17 4 3 19 19 N 1.36408 * 125.52990 * 179.97438 * 2 1 3 20 20 C 1.46501 * 125.85122 * 0.03951 * 19 2 1 21 21 C 1.50692 * 109.47151 * 85.00734 * 20 19 2 22 22 H 1.08006 * 120.00263 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00152 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00092 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00171 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46897 * 60.00292 * 25 23 21 27 27 H 1.48493 * 109.47390 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47128 * 300.00547 * 25 23 21 29 29 H 1.09000 * 109.47267 * 90.02475 * 1 2 3 30 30 H 1.09002 * 109.47505 * 210.02891 * 1 2 3 31 31 H 1.08997 * 109.46856 * 330.02747 * 1 2 3 32 32 H 1.07998 * 125.87640 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.89819 * 0.20251 * 9 8 6 34 34 H 1.07999 * 119.78837 * 180.30920 * 10 9 8 35 35 H 1.07994 * 120.06923 * 179.76250 * 13 12 11 36 36 H 1.08999 * 110.94510 * 133.64808 * 14 12 11 37 37 H 1.09007 * 110.94415 * 257.30363 * 14 12 11 38 38 H 1.09000 * 110.74721 * 92.96705 * 15 14 12 39 39 H 1.09002 * 110.74672 * 216.11812 * 15 14 12 40 40 H 1.09009 * 109.46638 * 205.00265 * 20 19 2 41 41 H 1.09000 * 109.47299 * 324.99717 * 20 19 2 42 42 H 0.97001 * 120.00654 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2918 1.0989 0.0000 4 6 3.6393 0.6794 0.0006 5 7 4.7108 1.4674 0.0003 6 6 4.5632 2.7971 -0.0001 7 8 3.4468 3.2864 -0.0007 8 6 5.7548 3.6736 -0.0010 9 6 7.0363 3.1187 0.0045 10 6 8.1434 3.9344 0.0032 11 6 7.9985 5.3224 0.0080 12 6 6.7189 5.8690 0.0014 13 6 5.6069 5.0627 -0.0008 14 6 6.8809 7.3770 -0.0087 15 6 8.3662 7.5356 -0.4109 16 8 8.9486 6.2957 0.0246 17 7 3.6384 -0.6947 -0.0042 18 1 4.4190 -1.2704 -0.0084 19 7 2.2997 -1.1101 0.0005 20 6 1.8319 -2.4984 0.0003 21 6 1.5552 -2.9351 -1.4152 22 1 1.7116 -2.2471 -2.2329 23 6 1.1023 -4.2129 -1.6664 24 7 0.9113 -5.0505 -0.6707 25 14 0.7585 -4.7539 -3.4210 26 1 2.0036 -4.6502 -4.2239 27 1 0.2857 -6.1615 -3.4214 28 1 -0.2862 -3.8800 -4.0128 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 1.9475 2.1225 -0.0004 33 1 7.1583 2.0457 0.0062 34 1 9.1313 3.4980 0.0024 35 1 4.6202 5.5018 -0.0020 36 1 6.2255 7.8343 -0.7499 37 1 6.6978 7.7952 0.9812 38 1 8.4638 7.6499 -1.4904 39 1 8.8185 8.3810 0.1077 40 1 2.5984 -3.1401 0.4352 41 1 0.9179 -2.5740 0.5893 42 1 0.5930 -5.9496 -0.8474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535774069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:50 Heat of formation + Delta-G solvation = 56.183633 kcal Electronic energy + Delta-G solvation = -26077.384738 eV Core-core repulsion = 22218.446318 eV Total energy + Delta-G solvation = -3858.938420 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.12727 -40.93728 -38.71740 -36.80336 -34.37936 -33.20264 -32.78891 -32.27351 -30.89185 -30.04426 -29.19917 -27.57590 -26.82106 -24.35692 -23.21715 -22.77418 -21.75364 -21.36351 -19.73461 -19.19093 -17.43568 -17.24035 -16.95757 -16.52747 -16.26404 -15.67925 -15.35500 -14.97396 -14.89466 -14.13622 -14.05956 -13.84188 -13.63990 -13.25922 -13.01336 -12.97064 -12.86120 -12.70776 -12.61269 -12.37964 -12.28310 -12.00066 -11.91665 -11.82903 -11.37139 -11.06263 -10.86966 -10.73345 -10.55364 -10.39801 -9.50351 -9.46472 -8.94492 -8.90724 -8.85167 -8.41115 -8.10862 -6.98532 -6.52607 -4.68535 0.99480 1.41962 1.75958 2.01044 2.93538 3.05193 3.11156 3.14248 3.15820 3.68649 4.01661 4.12711 4.30651 4.44553 4.66489 4.77966 4.78336 4.83990 4.91171 4.98654 5.18353 5.25274 5.49273 5.49997 5.55745 5.58730 5.67757 5.74380 5.82386 5.90853 6.08352 6.14990 6.23291 6.37125 6.46343 6.51494 6.57691 6.61346 6.69216 6.79110 7.15076 7.34691 7.44963 7.48680 7.62021 7.92666 8.25212 8.40290 9.02018 9.31042 10.49856 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.002189 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.248706 B =12789.742088 C =13217.802254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.190 3.810 3 C -0.333 4.333 4 C 0.472 3.528 5 N -0.695 5.695 6 C 0.536 3.464 7 O -0.583 6.583 8 C -0.123 4.123 9 C -0.028 4.028 10 C -0.155 4.155 11 C 0.114 3.886 12 C -0.194 4.194 13 C -0.023 4.023 14 C -0.107 4.107 15 C 0.051 3.949 16 O -0.307 6.307 17 N -0.466 5.466 18 H 0.446 0.554 19 N -0.338 5.338 20 C 0.254 3.746 21 C -0.557 4.557 22 H 0.069 0.931 23 C 0.071 3.929 24 N -0.886 5.886 25 Si 0.909 3.091 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.271 1.271 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.183 0.817 33 H 0.148 0.852 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.052 0.948 41 H 0.068 0.932 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.329 15.805 2.064 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.063 3.937 3 C -0.365 4.365 4 C 0.223 3.777 5 N -0.459 5.459 6 C 0.323 3.677 7 O -0.466 6.466 8 C -0.126 4.126 9 C -0.047 4.047 10 C -0.174 4.174 11 C 0.069 3.931 12 C -0.194 4.194 13 C -0.042 4.042 14 C -0.144 4.144 15 C -0.024 4.024 16 O -0.221 6.221 17 N -0.188 5.188 18 H 0.293 0.707 19 N -0.124 5.124 20 C 0.137 3.863 21 C -0.595 4.595 22 H 0.087 0.913 23 C -0.134 4.134 24 N -0.523 5.523 25 Si 0.736 3.264 26 H -0.198 1.198 27 H -0.208 1.208 28 H -0.196 1.196 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.105 0.895 32 H 0.200 0.800 33 H 0.166 0.834 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.122 0.878 40 H 0.069 0.931 41 H 0.086 0.914 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.737 15.183 2.184 17.181 hybrid contribution -0.356 -0.429 -0.993 1.138 sum 7.381 14.755 1.192 16.541 Atomic orbital electron populations 1.20604 0.86288 1.03923 1.04343 1.21360 0.94541 0.85582 0.92206 1.22257 0.91183 1.00308 1.22757 1.19100 0.91626 0.82102 0.84882 1.68747 1.28049 1.04934 1.44131 1.18703 0.86803 0.85893 0.76264 1.90595 1.26684 1.79228 1.50086 1.19701 0.93984 0.92599 1.06303 1.21246 0.90230 1.00700 0.92478 1.20266 1.00022 0.88892 1.08182 1.19799 0.87245 0.90267 0.95787 1.20593 0.93526 0.95242 1.10076 1.20371 0.97881 0.91890 0.94108 1.21747 0.96689 0.92598 1.03375 1.23809 0.92401 0.85735 1.00411 1.86770 1.35185 1.17883 1.82226 1.44535 0.98909 1.05184 1.70146 0.70706 1.47962 0.92741 1.08264 1.63435 1.20054 0.96515 0.70108 0.99579 1.21323 1.47859 0.98746 0.91564 0.91328 1.24943 0.94227 0.95780 0.98470 1.69882 1.43882 1.06975 1.31516 0.86352 0.79156 0.77840 0.83085 1.19847 1.20784 1.19647 0.89088 0.90057 0.89504 0.79968 0.83400 0.85349 0.84905 0.89114 0.89307 0.90604 0.87752 0.93054 0.91399 0.91754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.29 10.09 36.00 0.36 -0.92 16 2 C 0.19 3.34 6.93 -81.70 -0.57 2.77 16 3 C -0.33 -6.34 9.41 -39.62 -0.37 -6.71 16 4 C 0.47 9.22 8.07 -155.26 -1.25 7.96 16 5 N -0.69 -13.70 9.67 -12.21 -0.12 -13.82 16 6 C 0.54 10.68 7.69 -12.73 -0.10 10.59 16 7 O -0.58 -12.56 13.29 5.02 0.07 -12.49 16 8 C -0.12 -2.08 5.88 -104.86 -0.62 -2.69 16 9 C -0.03 -0.41 9.56 -39.32 -0.38 -0.79 16 10 C -0.15 -2.06 10.05 -39.35 -0.40 -2.45 16 11 C 0.11 1.54 7.04 -38.75 -0.27 1.27 16 12 C -0.19 -2.53 6.26 -104.13 -0.65 -3.18 16 13 C -0.02 -0.35 9.58 -39.36 -0.38 -0.73 16 14 C -0.11 -0.97 7.12 -26.51 -0.19 -1.16 16 15 C 0.05 0.42 8.00 38.05 0.30 0.73 16 16 O -0.31 -3.74 11.09 -19.82 -0.22 -3.96 16 17 N -0.47 -8.37 7.38 31.33 0.23 -8.13 16 18 H 0.45 6.96 8.96 -182.55 -1.64 5.32 16 19 N -0.34 -6.34 3.63 -58.03 -0.21 -6.55 16 20 C 0.25 5.24 5.93 -5.20 -0.03 5.21 16 21 C -0.56 -13.03 9.39 -34.44 -0.32 -13.35 16 22 H 0.07 1.66 7.81 -52.48 -0.41 1.25 16 23 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 24 N -0.89 -22.14 13.29 55.43 0.74 -21.40 16 25 Si 0.91 19.02 29.54 -169.99 -5.02 14.00 16 26 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 27 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 28 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 29 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 30 H 0.08 1.10 7.14 -51.93 -0.37 0.73 16 31 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 32 H 0.18 3.60 5.77 -52.49 -0.30 3.30 16 33 H 0.15 2.11 7.55 -52.49 -0.40 1.72 16 34 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.13 1.97 7.66 -52.49 -0.40 1.57 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.71 8.14 -51.92 -0.42 0.29 16 38 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 39 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.05 1.10 8.14 -51.92 -0.42 0.68 16 41 H 0.07 1.41 7.18 -51.93 -0.37 1.04 16 42 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 LS Contribution 361.09 15.07 5.44 5.44 Total: -1.00 -29.45 361.09 -10.45 -39.90 By element: Atomic # 1 Polarization: 15.28 SS G_CDS: -6.41 Total: 8.87 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -4.95 Total: -1.85 kcal Atomic # 7 Polarization: -50.54 SS G_CDS: 0.64 Total: -49.90 kcal Atomic # 8 Polarization: -16.30 SS G_CDS: -0.15 Total: -16.45 kcal Atomic # 14 Polarization: 19.02 SS G_CDS: -5.02 Total: 14.00 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -29.45 -10.45 -39.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535774069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.085 kcal (2) G-P(sol) polarization free energy of solvation -29.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds