Wall clock time and date at job start Tue Mar 31 2020 14:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35038 * 125.53343 * 2 1 4 4 C 1.41127 * 108.24100 * 179.97438 * 3 2 1 5 5 N 1.33014 * 126.37656 * 179.97438 * 4 3 2 6 6 C 1.33785 * 119.99600 * 0.02562 * 5 4 3 7 7 O 1.21888 * 120.00155 * 359.97438 * 6 5 4 8 8 C 1.47926 * 120.00097 * 180.02562 * 6 5 4 9 9 C 1.39647 * 120.25054 * 359.71685 * 8 6 5 10 10 C 1.37514 * 120.20524 * 179.97438 * 9 8 6 11 11 C 1.39555 * 120.42182 * 0.56338 * 10 9 8 12 12 C 1.39150 * 119.08883 * 359.39306 * 11 10 9 13 13 C 1.37360 * 120.92482 * 0.43603 * 12 11 10 14 14 C 1.51669 * 107.00284 * 180.69694 * 12 11 10 15 15 C 1.54694 * 101.90004 * 15.49308 * 14 12 11 16 16 O 1.36025 * 129.73314 * 179.07803 * 11 10 9 17 17 N 1.37417 * 107.25456 * 0.22643 * 4 3 2 18 18 H 0.96998 * 126.36509 * 179.75366 * 17 4 3 19 19 N 1.36408 * 125.52990 * 179.97438 * 2 1 3 20 20 C 1.46501 * 125.85122 * 0.03951 * 19 2 1 21 21 C 1.50692 * 109.47151 * 85.00734 * 20 19 2 22 22 H 1.08006 * 120.00263 * 359.97438 * 21 20 19 23 23 C 1.37878 * 120.00152 * 179.97438 * 21 20 19 24 24 N 1.31511 * 120.00092 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 120.00171 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.46897 * 60.00292 * 25 23 21 27 27 H 1.48493 * 109.47390 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47128 * 300.00547 * 25 23 21 29 29 H 1.09000 * 109.47267 * 90.02475 * 1 2 3 30 30 H 1.09002 * 109.47505 * 210.02891 * 1 2 3 31 31 H 1.08997 * 109.46856 * 330.02747 * 1 2 3 32 32 H 1.07998 * 125.87640 * 359.97438 * 3 2 1 33 33 H 1.07997 * 119.89819 * 0.20251 * 9 8 6 34 34 H 1.07999 * 119.78837 * 180.30920 * 10 9 8 35 35 H 1.07994 * 120.06923 * 179.76250 * 13 12 11 36 36 H 1.08999 * 110.94510 * 133.64808 * 14 12 11 37 37 H 1.09007 * 110.94415 * 257.30363 * 14 12 11 38 38 H 1.09000 * 110.74721 * 92.96705 * 15 14 12 39 39 H 1.09002 * 110.74672 * 216.11812 * 15 14 12 40 40 H 1.09009 * 109.46638 * 205.00265 * 20 19 2 41 41 H 1.09000 * 109.47299 * 324.99717 * 20 19 2 42 42 H 0.97001 * 120.00654 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2918 1.0989 0.0000 4 6 3.6393 0.6794 0.0006 5 7 4.7108 1.4674 0.0003 6 6 4.5632 2.7971 -0.0001 7 8 3.4468 3.2864 -0.0007 8 6 5.7548 3.6736 -0.0010 9 6 7.0363 3.1187 0.0045 10 6 8.1434 3.9344 0.0032 11 6 7.9985 5.3224 0.0080 12 6 6.7189 5.8690 0.0014 13 6 5.6069 5.0627 -0.0008 14 6 6.8809 7.3770 -0.0087 15 6 8.3662 7.5356 -0.4109 16 8 8.9486 6.2957 0.0246 17 7 3.6384 -0.6947 -0.0042 18 1 4.4190 -1.2704 -0.0084 19 7 2.2997 -1.1101 0.0005 20 6 1.8319 -2.4984 0.0003 21 6 1.5552 -2.9351 -1.4152 22 1 1.7116 -2.2471 -2.2329 23 6 1.1023 -4.2129 -1.6664 24 7 0.9113 -5.0505 -0.6707 25 14 0.7585 -4.7539 -3.4210 26 1 2.0036 -4.6502 -4.2239 27 1 0.2857 -6.1615 -3.4214 28 1 -0.2862 -3.8800 -4.0128 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3634 -0.8897 0.5143 31 1 -0.3633 0.8902 0.5134 32 1 1.9475 2.1225 -0.0004 33 1 7.1583 2.0457 0.0062 34 1 9.1313 3.4980 0.0024 35 1 4.6202 5.5018 -0.0020 36 1 6.2255 7.8343 -0.7499 37 1 6.6978 7.7952 0.9812 38 1 8.4638 7.6499 -1.4904 39 1 8.8185 8.3810 0.1077 40 1 2.5984 -3.1401 0.4352 41 1 0.9179 -2.5740 0.5893 42 1 0.5930 -5.9496 -0.8474 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000535774069.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:49 Heat of formation + Delta-G solvation = 39.353339 kcal Electronic energy + Delta-G solvation = -26078.114555 eV Core-core repulsion = 22218.446318 eV Total energy + Delta-G solvation = -3859.668237 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.45515 -42.04202 -40.11091 -37.96003 -36.02234 -34.82853 -33.79886 -33.62047 -32.43693 -31.24203 -30.14209 -28.85449 -28.47068 -25.69101 -24.56694 -23.90319 -22.75973 -22.72384 -21.14277 -20.55544 -18.93390 -18.50731 -18.33873 -17.74417 -17.22274 -17.00594 -16.68065 -16.55182 -16.39437 -15.63995 -15.33058 -15.08837 -14.72916 -14.45116 -14.30481 -14.24555 -14.11924 -13.89277 -13.79449 -13.68416 -13.41910 -13.34625 -13.19598 -12.94099 -12.71821 -12.61839 -12.29499 -12.09526 -11.81730 -11.68524 -11.13128 -10.95108 -10.77274 -10.35172 -9.95709 -9.92009 -9.19589 -8.59314 -8.27551 -6.56332 -0.27172 0.33888 0.38485 0.53860 1.39310 1.42138 1.48604 1.52372 2.25575 2.29995 2.50735 2.67906 2.94475 3.24248 3.33882 3.55175 3.65637 3.75189 3.92917 4.18888 4.19371 4.26027 4.26654 4.43217 4.48866 4.65747 4.67065 4.71558 4.83140 4.84201 4.86572 4.91160 4.92126 5.07378 5.14585 5.22044 5.29860 5.34881 5.50381 5.55318 5.56565 5.69168 5.95833 6.10953 6.16434 6.40058 6.58816 6.77562 7.17089 7.79500 8.66032 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.025986 B = 0.002189 C = 0.002118 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.248706 B =12789.742088 C =13217.802254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.199 3.801 3 C -0.347 4.347 4 C 0.457 3.543 5 N -0.700 5.700 6 C 0.524 3.476 7 O -0.610 6.610 8 C -0.153 4.153 9 C -0.030 4.030 10 C -0.155 4.155 11 C 0.115 3.885 12 C -0.196 4.196 13 C -0.032 4.032 14 C -0.105 4.105 15 C 0.047 3.953 16 O -0.317 6.317 17 N -0.462 5.462 18 H 0.453 0.547 19 N -0.344 5.344 20 C 0.266 3.734 21 C -0.563 4.563 22 H 0.057 0.943 23 C 0.033 3.967 24 N -0.911 5.911 25 Si 0.962 3.038 26 H -0.277 1.277 27 H -0.279 1.279 28 H -0.267 1.267 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.114 0.886 32 H 0.175 0.825 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.137 0.863 40 H 0.043 0.957 41 H 0.071 0.929 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.969 17.286 1.630 19.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.072 3.928 3 C -0.379 4.379 4 C 0.208 3.792 5 N -0.464 5.464 6 C 0.313 3.687 7 O -0.495 6.495 8 C -0.156 4.156 9 C -0.048 4.048 10 C -0.174 4.174 11 C 0.069 3.931 12 C -0.196 4.196 13 C -0.051 4.051 14 C -0.142 4.142 15 C -0.027 4.027 16 O -0.231 6.231 17 N -0.184 5.184 18 H 0.302 0.698 19 N -0.130 5.130 20 C 0.150 3.850 21 C -0.601 4.601 22 H 0.076 0.924 23 C -0.170 4.170 24 N -0.549 5.549 25 Si 0.787 3.213 26 H -0.203 1.203 27 H -0.204 1.204 28 H -0.192 1.192 29 H 0.117 0.883 30 H 0.104 0.896 31 H 0.133 0.867 32 H 0.192 0.808 33 H 0.165 0.835 34 H 0.169 0.831 35 H 0.146 0.854 36 H 0.127 0.873 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.155 0.845 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.395 16.673 1.751 18.749 hybrid contribution -0.478 -0.776 -0.844 1.242 sum 7.918 15.896 0.908 17.782 Atomic orbital electron populations 1.20793 0.83506 1.05501 1.05240 1.21909 0.96091 0.84511 0.90317 1.22196 0.91357 1.00386 1.23917 1.19332 0.92109 0.82610 0.85191 1.68820 1.28157 1.05090 1.44315 1.19275 0.87589 0.86196 0.75626 1.90557 1.27837 1.79561 1.51560 1.19645 0.93609 0.93106 1.09219 1.21221 0.89999 1.00913 0.92703 1.20455 1.00430 0.89144 1.07365 1.19998 0.87774 0.90679 0.94687 1.20964 0.92650 0.97593 1.08438 1.20369 0.98509 0.91471 0.94755 1.21900 0.97766 0.89661 1.04870 1.24178 0.91682 0.84951 1.01856 1.86767 1.35349 1.18833 1.82106 1.44510 0.99028 1.04863 1.70037 0.69752 1.47872 0.93213 1.08078 1.63829 1.19756 0.96315 0.70733 0.98240 1.21475 1.47502 0.98654 0.92436 0.92436 1.25565 0.94175 0.95915 1.01340 1.69946 1.44747 1.07265 1.32909 0.85535 0.78756 0.77579 0.79466 1.20254 1.20434 1.19154 0.88301 0.89643 0.86746 0.80752 0.83506 0.83116 0.85408 0.87329 0.87937 0.89182 0.84527 0.93877 0.91096 0.91650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.42 10.09 71.23 0.72 -1.70 16 2 C 0.20 6.90 6.93 41.11 0.28 7.19 16 3 C -0.35 -13.41 9.41 22.24 0.21 -13.20 16 4 C 0.46 18.26 8.07 133.91 1.08 19.34 16 5 N -0.70 -28.51 9.67 -311.25 -3.01 -31.52 16 6 C 0.52 21.71 7.69 86.96 0.67 22.38 16 7 O -0.61 -27.36 13.29 -4.95 -0.07 -27.42 16 8 C -0.15 -5.31 5.88 -20.02 -0.12 -5.43 16 9 C -0.03 -0.89 9.56 22.44 0.21 -0.68 16 10 C -0.16 -3.98 10.05 22.42 0.23 -3.75 16 11 C 0.11 2.89 7.04 22.81 0.16 3.06 16 12 C -0.20 -4.86 6.26 -19.54 -0.12 -4.99 16 13 C -0.03 -0.98 9.58 22.42 0.21 -0.76 16 14 C -0.11 -1.61 7.12 30.73 0.22 -1.39 16 15 C 0.05 0.61 8.00 72.56 0.58 1.19 16 16 O -0.32 -6.87 11.09 -93.83 -1.04 -7.91 16 17 N -0.46 -16.80 7.38 -54.80 -0.40 -17.20 16 18 H 0.45 14.42 8.96 -213.28 -1.91 12.51 16 19 N -0.34 -12.88 3.63 -337.52 -1.23 -14.11 16 20 C 0.27 10.97 5.93 85.63 0.51 11.48 16 21 C -0.56 -26.11 9.39 25.60 0.24 -25.87 16 22 H 0.06 2.77 7.81 -2.91 -0.02 2.75 16 23 C 0.03 1.55 5.46 84.66 0.46 2.01 16 24 N -0.91 -45.15 13.29 21.45 0.28 -44.87 16 25 Si 0.96 38.42 29.54 68.60 2.03 40.45 16 26 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 27 H -0.28 -10.94 7.11 99.48 0.71 -10.23 16 28 H -0.27 -10.39 7.11 99.48 0.71 -9.68 16 29 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 30 H 0.08 2.19 7.14 -2.39 -0.02 2.17 16 31 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 32 H 0.18 7.09 5.77 -2.91 -0.02 7.07 16 33 H 0.15 4.30 7.55 -2.91 -0.02 4.28 16 34 H 0.15 3.08 8.06 -2.91 -0.02 3.06 16 35 H 0.13 3.91 7.66 -2.91 -0.02 3.89 16 36 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 38 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.04 1.85 8.14 -2.38 -0.02 1.84 16 41 H 0.07 2.91 7.18 -2.39 -0.02 2.89 16 42 H 0.27 12.98 8.31 -92.71 -0.77 12.21 16 Total: -1.00 -63.49 361.09 1.27 -62.22 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -0.84 Total: 31.49 kcal Atomic # 6 Polarization: 3.33 SS G_CDS: 5.55 Total: 8.87 kcal Atomic # 7 Polarization: -103.35 SS G_CDS: -4.36 Total: -107.70 kcal Atomic # 8 Polarization: -34.22 SS G_CDS: -1.11 Total: -35.33 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Total: -63.49 1.27 -62.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535774069.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.576 kcal (2) G-P(sol) polarization free energy of solvation -63.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.222 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds