Wall clock time and date at job start Tue Mar 31 2020 16:27:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47224 * 2 1 4 4 C 1.37977 * 120.07843 * 267.48555 * 3 2 1 5 5 C 1.38339 * 120.14529 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.29684 * 359.97438 * 5 4 3 7 7 C 1.37925 * 120.14441 * 0.02562 * 6 5 4 8 8 C 1.39575 * 120.07031 * 87.50572 * 3 2 1 9 9 C 1.47814 * 120.14729 * 359.97438 * 8 3 2 10 10 O 1.21560 * 119.99864 * 55.47939 * 9 8 3 11 11 N 1.34773 * 119.99951 * 235.48302 * 9 8 3 12 12 C 1.46496 * 120.00287 * 5.67931 * 11 9 8 13 13 C 1.50701 * 109.47238 * 95.34255 * 12 11 9 14 14 H 1.07999 * 120.00088 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00169 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00338 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99698 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47565 * 90.00178 * 17 15 13 19 19 H 1.48507 * 109.46705 * 210.00134 * 17 15 13 20 20 H 1.48500 * 109.47082 * 329.99466 * 17 15 13 21 21 C 1.39961 * 119.99929 * 185.67622 * 11 9 8 22 22 C 1.38870 * 120.04538 * 172.21926 * 21 11 9 23 23 C 1.38108 * 119.94771 * 179.76987 * 22 21 11 24 24 C 1.38474 * 120.05059 * 0.50888 * 23 22 21 25 25 F 1.35102 * 119.95740 * 179.72097 * 24 23 22 26 26 C 1.38479 * 120.09102 * 359.74198 * 24 23 22 27 27 C 1.38107 * 120.05028 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46824 * 299.99543 * 1 2 3 30 30 H 1.09000 * 109.47867 * 59.99635 * 1 2 3 31 31 H 1.09002 * 109.46824 * 240.00457 * 2 1 3 32 32 H 1.08995 * 109.47563 * 120.00690 * 2 1 3 33 33 H 1.07995 * 119.92262 * 0.03893 * 4 3 2 34 34 H 1.08000 * 119.85033 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.92118 * 180.28082 * 6 5 4 36 36 H 1.08005 * 120.07077 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.47096 * 215.34205 * 12 11 9 38 38 H 1.09000 * 109.47538 * 335.34338 * 12 11 9 39 39 H 0.97001 * 120.00415 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.02450 * 0.02562 * 22 21 11 41 41 H 1.08004 * 119.97217 * 180.24641 * 23 22 21 42 42 H 1.08004 * 119.97722 * 179.97438 * 26 24 23 43 43 H 1.07992 * 120.02587 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3122 2.0553 -1.1928 5 6 2.7739 3.3594 -1.1944 6 6 2.9577 4.0363 -0.0015 7 6 2.6817 3.4137 1.1979 8 6 2.2159 2.0977 1.2068 9 6 1.9179 1.4243 2.4884 10 8 2.4518 0.3658 2.7573 11 7 1.0544 1.9838 3.3588 12 6 0.3171 3.1930 2.9843 13 6 -1.0394 2.8094 2.4515 14 1 -1.3237 1.7689 2.3969 15 6 -1.9172 3.7867 2.0327 16 7 -3.1012 3.4520 1.5682 17 14 -1.4253 5.5864 2.1264 18 1 -0.7644 5.9857 0.8580 19 1 -2.6360 6.4200 2.3376 20 1 -0.4846 5.7841 3.2583 21 6 0.8621 1.4096 4.6207 22 6 0.1000 2.0693 5.5759 23 6 -0.0924 1.4987 6.8188 24 6 0.4826 0.2746 7.1163 25 9 0.2978 -0.2793 8.3346 26 6 1.2472 -0.3825 6.1669 27 6 1.4382 0.1823 4.9212 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.1703 1.5328 -2.1272 34 1 2.9911 3.8516 -2.1309 35 1 3.3141 5.0558 -0.0100 36 1 2.8252 3.9433 2.1282 37 1 0.1964 3.8309 3.8599 38 1 0.8701 3.7323 2.2153 39 1 -3.7186 4.1395 1.2732 40 1 -0.3453 3.0260 5.3457 41 1 -0.6884 2.0095 7.5606 42 1 1.6951 -1.3369 6.4011 43 1 2.0349 -0.3302 4.1813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562422107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:51 Heat of formation + Delta-G solvation = -11.299012 kcal Electronic energy + Delta-G solvation = -28244.161795 eV Core-core repulsion = 24362.377146 eV Total energy + Delta-G solvation = -3881.784649 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -48.48654 -40.77175 -38.94744 -37.48921 -35.49763 -33.77497 -32.66101 -31.35404 -30.71517 -29.27038 -29.02293 -27.79188 -24.24343 -23.38914 -23.22857 -22.44484 -21.54055 -20.79952 -19.32779 -17.43188 -17.19994 -17.15954 -16.69650 -15.96552 -15.63768 -15.30388 -15.20014 -14.70430 -14.36700 -14.14771 -13.93115 -13.64132 -13.48367 -13.18557 -13.13298 -12.86039 -12.78016 -12.71843 -12.33591 -12.07794 -11.96335 -11.86267 -11.38316 -11.32244 -11.24862 -10.83450 -10.78395 -10.57748 -10.52250 -10.48879 -9.80172 -9.26664 -8.98653 -8.85595 -8.69709 -8.56418 -8.46736 -7.30424 -6.29957 -4.32267 1.20218 1.57155 1.58225 1.66978 2.95586 3.09697 3.14937 3.18492 3.36376 3.95655 4.15599 4.17474 4.68935 4.74979 4.96691 4.98561 5.02932 5.14181 5.20197 5.23433 5.43855 5.60629 5.67602 5.69847 5.75162 5.80596 5.84076 5.89908 6.05987 6.21658 6.25254 6.30032 6.37253 6.39045 6.41848 6.51237 6.60064 6.61890 6.68188 6.70909 6.81796 6.88176 6.99437 7.10569 7.26967 7.51888 7.75000 8.23857 8.45327 8.75114 9.26694 10.82110 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.005600 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.991621 B = 4999.198193 C = 6453.659615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 C -0.022 4.022 4 C -0.125 4.125 5 C -0.100 4.100 6 C -0.133 4.133 7 C -0.082 4.082 8 C -0.108 4.108 9 C 0.570 3.430 10 O -0.530 6.530 11 N -0.521 5.521 12 C 0.190 3.810 13 C -0.538 4.538 14 H 0.082 0.918 15 C 0.083 3.917 16 N -0.883 5.883 17 Si 0.862 3.138 18 H -0.270 1.270 19 H -0.281 1.281 20 H -0.264 1.264 21 C 0.164 3.836 22 C -0.116 4.116 23 C -0.132 4.132 24 C 0.054 3.946 25 F -0.151 7.151 26 C -0.136 4.136 27 C -0.151 4.151 28 H 0.052 0.948 29 H 0.073 0.927 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.089 0.911 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.125 0.875 37 H 0.041 0.959 38 H 0.051 0.949 39 H 0.268 0.732 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.269 -0.689 -0.622 10.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.137 4.137 3 C -0.023 4.023 4 C -0.143 4.143 5 C -0.118 4.118 6 C -0.151 4.151 7 C -0.100 4.100 8 C -0.111 4.111 9 C 0.362 3.638 10 O -0.410 6.410 11 N -0.238 5.238 12 C 0.070 3.930 13 C -0.576 4.576 14 H 0.100 0.900 15 C -0.121 4.121 16 N -0.520 5.520 17 Si 0.688 3.312 18 H -0.195 1.195 19 H -0.207 1.207 20 H -0.188 1.188 21 C 0.068 3.932 22 C -0.136 4.136 23 C -0.152 4.152 24 C 0.034 3.966 25 F -0.130 7.130 26 C -0.155 4.155 27 C -0.170 4.170 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.059 0.941 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.160 0.840 41 H 0.150 0.850 42 H 0.148 0.852 43 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 10.341 -1.112 -0.598 10.417 hybrid contribution -0.321 1.204 0.204 1.263 sum 10.020 0.092 -0.394 10.028 Atomic orbital electron populations 1.21756 0.93512 1.01407 1.03776 1.20789 0.97140 0.92146 1.03628 1.19826 0.94875 0.96208 0.91418 1.20920 1.00873 0.95247 0.97223 1.21205 0.98106 0.94558 0.97960 1.20967 1.01971 0.99961 0.92225 1.21142 0.97400 0.92821 0.98676 1.19469 1.03934 0.94948 0.92700 1.18423 0.77997 0.83970 0.83437 1.90311 1.53066 1.21991 1.75656 1.45606 1.38398 1.28185 1.11641 1.20349 0.93434 0.82093 0.97131 1.21146 0.96827 0.96172 1.43425 0.90010 1.24770 0.94605 0.98530 0.94211 1.69863 1.06996 1.33834 1.41283 0.87056 0.78895 0.85775 0.79435 1.19526 1.20661 1.18837 1.18018 0.97053 0.93094 0.85011 1.20872 0.99633 1.01403 0.91712 1.20833 1.01687 0.94838 0.97823 1.17717 1.02955 0.94547 0.81382 1.91430 1.94267 1.85429 1.41908 1.21065 1.00252 1.00739 0.93450 1.22673 1.01617 0.94711 0.97985 0.92941 0.90762 0.92750 0.91369 0.89232 0.85727 0.85999 0.85806 0.85724 0.94149 0.93130 0.92228 0.83976 0.85015 0.85246 0.79510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.57 9.89 37.15 0.37 -2.20 16 2 C -0.10 -1.59 5.63 -27.89 -0.16 -1.75 16 3 C -0.02 -0.37 5.17 -104.22 -0.54 -0.91 16 4 C -0.12 -1.78 9.68 -39.64 -0.38 -2.16 16 5 C -0.10 -1.32 10.04 -39.49 -0.40 -1.71 16 6 C -0.13 -1.84 10.03 -39.64 -0.40 -2.24 16 7 C -0.08 -1.31 7.49 -39.18 -0.29 -1.60 16 8 C -0.11 -1.93 4.88 -104.97 -0.51 -2.44 16 9 C 0.57 11.08 6.46 -12.35 -0.08 11.00 16 10 O -0.53 -10.51 11.58 5.31 0.06 -10.45 16 11 N -0.52 -10.44 2.69 -115.78 -0.31 -10.76 16 12 C 0.19 4.01 3.57 -5.20 -0.02 4.00 16 13 C -0.54 -13.56 9.85 -34.44 -0.34 -13.90 16 14 H 0.08 2.33 7.26 -52.49 -0.38 1.95 16 15 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 16 N -0.88 -24.80 13.96 55.43 0.77 -24.02 16 17 Si 0.86 19.03 27.47 -169.99 -4.67 14.36 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 20 H -0.26 -5.41 6.54 56.52 0.37 -5.04 16 21 C 0.16 3.18 6.46 -83.68 -0.54 2.64 16 22 C -0.12 -2.10 9.26 -39.40 -0.36 -2.47 16 23 C -0.13 -2.17 10.02 -39.54 -0.40 -2.56 16 24 C 0.05 0.89 7.30 -39.41 -0.29 0.60 16 25 F -0.15 -2.44 17.27 2.25 0.04 -2.40 16 26 C -0.14 -2.21 10.02 -39.54 -0.40 -2.61 16 27 C -0.15 -2.73 9.05 -39.40 -0.36 -3.09 16 28 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.57 7.27 -51.93 -0.38 1.20 16 30 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.90 8.07 -51.93 -0.42 0.48 16 32 H 0.09 1.54 5.84 -51.93 -0.30 1.24 16 33 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 34 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.12 1.37 8.06 -52.49 -0.42 0.94 16 36 H 0.12 1.83 7.62 -52.48 -0.40 1.43 16 37 H 0.04 0.83 5.27 -51.93 -0.27 0.56 16 38 H 0.05 1.04 3.89 -51.93 -0.20 0.84 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.14 2.58 6.12 -52.48 -0.32 2.26 16 41 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 42 H 0.13 1.79 8.06 -52.48 -0.42 1.37 16 43 H 0.19 3.51 4.53 -56.21 -0.25 3.25 16 LS Contribution 354.76 15.07 5.35 5.35 Total: -1.00 -28.21 354.76 -9.01 -37.21 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.06 Total: 10.03 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: -5.19 Total: -19.32 kcal Atomic # 7 Polarization: -35.24 SS G_CDS: 0.46 Total: -34.78 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.06 Total: -10.45 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.67 Total: 14.36 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -28.21 -9.01 -37.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562422107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.914 kcal (2) G-P(sol) polarization free energy of solvation -28.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds