Wall clock time and date at job start Tue Mar 31 2020 16:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50700 * 109.47224 * 2 1 4 4 C 1.37977 * 120.07843 * 267.48555 * 3 2 1 5 5 C 1.38339 * 120.14529 * 180.02562 * 4 3 2 6 6 C 1.38386 * 120.29684 * 359.97438 * 5 4 3 7 7 C 1.37925 * 120.14441 * 0.02562 * 6 5 4 8 8 C 1.39575 * 120.07031 * 87.50572 * 3 2 1 9 9 C 1.47814 * 120.14729 * 359.97438 * 8 3 2 10 10 O 1.21560 * 119.99864 * 55.47939 * 9 8 3 11 11 N 1.34773 * 119.99951 * 235.48302 * 9 8 3 12 12 C 1.46496 * 120.00287 * 5.67931 * 11 9 8 13 13 C 1.50701 * 109.47238 * 95.34255 * 12 11 9 14 14 H 1.07999 * 120.00088 * 359.97438 * 13 12 11 15 15 C 1.37879 * 120.00169 * 180.02562 * 13 12 11 16 16 N 1.31510 * 120.00338 * 180.02562 * 15 13 12 17 17 Si 1.86806 * 119.99698 * 359.97438 * 15 13 12 18 18 H 1.48497 * 109.47565 * 90.00178 * 17 15 13 19 19 H 1.48507 * 109.46705 * 210.00134 * 17 15 13 20 20 H 1.48500 * 109.47082 * 329.99466 * 17 15 13 21 21 C 1.39961 * 119.99929 * 185.67622 * 11 9 8 22 22 C 1.38870 * 120.04538 * 172.21926 * 21 11 9 23 23 C 1.38108 * 119.94771 * 179.76987 * 22 21 11 24 24 C 1.38474 * 120.05059 * 0.50888 * 23 22 21 25 25 F 1.35102 * 119.95740 * 179.72097 * 24 23 22 26 26 C 1.38479 * 120.09102 * 359.74198 * 24 23 22 27 27 C 1.38107 * 120.05028 * 0.02562 * 26 24 23 28 28 H 1.09002 * 109.47156 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46824 * 299.99543 * 1 2 3 30 30 H 1.09000 * 109.47867 * 59.99635 * 1 2 3 31 31 H 1.09002 * 109.46824 * 240.00457 * 2 1 3 32 32 H 1.08995 * 109.47563 * 120.00690 * 2 1 3 33 33 H 1.07995 * 119.92262 * 0.03893 * 4 3 2 34 34 H 1.08000 * 119.85033 * 180.02562 * 5 4 3 35 35 H 1.07997 * 119.92118 * 180.28082 * 6 5 4 36 36 H 1.08005 * 120.07077 * 180.02562 * 7 6 5 37 37 H 1.09003 * 109.47096 * 215.34205 * 12 11 9 38 38 H 1.09000 * 109.47538 * 335.34338 * 12 11 9 39 39 H 0.97001 * 120.00415 * 180.02562 * 16 15 13 40 40 H 1.08003 * 120.02450 * 0.02562 * 22 21 11 41 41 H 1.08004 * 119.97217 * 180.24641 * 23 22 21 42 42 H 1.08004 * 119.97722 * 179.97438 * 26 24 23 43 43 H 1.07992 * 120.02587 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3122 2.0553 -1.1928 5 6 2.7739 3.3594 -1.1944 6 6 2.9577 4.0363 -0.0015 7 6 2.6817 3.4137 1.1979 8 6 2.2159 2.0977 1.2068 9 6 1.9179 1.4243 2.4884 10 8 2.4518 0.3658 2.7573 11 7 1.0544 1.9838 3.3588 12 6 0.3171 3.1930 2.9843 13 6 -1.0394 2.8094 2.4515 14 1 -1.3237 1.7689 2.3969 15 6 -1.9172 3.7867 2.0327 16 7 -3.1012 3.4520 1.5682 17 14 -1.4253 5.5864 2.1264 18 1 -0.7644 5.9857 0.8580 19 1 -2.6360 6.4200 2.3376 20 1 -0.4846 5.7841 3.2583 21 6 0.8621 1.4096 4.6207 22 6 0.1000 2.0693 5.5759 23 6 -0.0924 1.4987 6.8188 24 6 0.4826 0.2746 7.1163 25 9 0.2978 -0.2793 8.3346 26 6 1.2472 -0.3825 6.1669 27 6 1.4382 0.1823 4.9212 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3635 0.5139 -0.8899 31 1 1.8932 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 2.1703 1.5328 -2.1272 34 1 2.9911 3.8516 -2.1309 35 1 3.3141 5.0558 -0.0100 36 1 2.8252 3.9433 2.1282 37 1 0.1964 3.8309 3.8599 38 1 0.8701 3.7323 2.2153 39 1 -3.7186 4.1395 1.2732 40 1 -0.3453 3.0260 5.3457 41 1 -0.6884 2.0095 7.5606 42 1 1.6951 -1.3369 6.4011 43 1 2.0349 -0.3302 4.1813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562422107.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:27:50 Heat of formation + Delta-G solvation = -24.098898 kcal Electronic energy + Delta-G solvation = -28244.716839 eV Core-core repulsion = 24362.377146 eV Total energy + Delta-G solvation = -3882.339694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.138 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -49.80888 -42.18587 -40.19034 -38.84772 -37.05387 -35.04803 -34.57273 -32.58172 -32.09208 -30.67668 -30.43702 -29.37697 -25.61267 -24.98153 -24.49269 -23.90524 -22.93534 -22.06768 -20.68083 -19.14870 -18.78139 -18.59068 -18.14548 -17.16698 -16.99941 -16.57452 -16.52005 -16.35778 -15.75511 -15.58245 -15.42027 -14.88941 -14.73433 -14.70056 -14.51111 -14.38737 -14.12699 -14.06253 -13.83195 -13.57431 -13.50339 -13.08595 -12.99412 -12.75037 -12.52894 -12.37732 -12.21882 -12.12852 -11.90638 -11.79340 -11.64475 -10.87291 -10.80544 -10.40267 -10.07164 -9.78549 -9.63574 -8.78081 -8.29866 -6.36940 -0.07236 0.26429 0.29099 0.44147 1.37384 1.37827 1.45889 1.52317 1.94201 2.32031 2.69505 2.83888 3.03578 3.31954 3.38408 3.79212 3.84634 3.90261 3.95421 4.13392 4.24577 4.29567 4.33272 4.40055 4.44937 4.53058 4.55762 4.60052 4.68426 4.74158 4.89716 4.94396 5.02110 5.02835 5.12446 5.18866 5.23416 5.28930 5.34909 5.38589 5.42182 5.52968 5.58502 5.61944 6.01390 6.07254 6.09781 6.39659 6.66248 6.96830 7.25900 8.85902 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.010179 B = 0.005600 C = 0.004338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2749.991621 B = 4999.198193 C = 6453.659615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.094 4.094 3 C -0.047 4.047 4 C -0.127 4.127 5 C -0.095 4.095 6 C -0.131 4.131 7 C -0.098 4.098 8 C -0.140 4.140 9 C 0.566 3.434 10 O -0.544 6.544 11 N -0.528 5.528 12 C 0.200 3.800 13 C -0.530 4.530 14 H 0.031 0.969 15 C 0.028 3.972 16 N -0.936 5.936 17 Si 0.926 3.074 18 H -0.258 1.258 19 H -0.285 1.285 20 H -0.235 1.235 21 C 0.138 3.862 22 C -0.128 4.128 23 C -0.125 4.125 24 C 0.053 3.947 25 F -0.146 7.146 26 C -0.129 4.129 27 C -0.162 4.162 28 H 0.064 0.936 29 H 0.025 0.975 30 H 0.056 0.944 31 H 0.100 0.900 32 H 0.069 0.931 33 H 0.151 0.849 34 H 0.161 0.839 35 H 0.157 0.843 36 H 0.131 0.869 37 H 0.052 0.948 38 H 0.066 0.934 39 H 0.268 0.732 40 H 0.140 0.860 41 H 0.159 0.841 42 H 0.155 0.845 43 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.032 1.095 -1.171 12.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.131 4.131 3 C -0.048 4.048 4 C -0.145 4.145 5 C -0.112 4.112 6 C -0.149 4.149 7 C -0.117 4.117 8 C -0.142 4.142 9 C 0.358 3.642 10 O -0.425 6.425 11 N -0.246 5.246 12 C 0.080 3.920 13 C -0.568 4.568 14 H 0.049 0.951 15 C -0.172 4.172 16 N -0.575 5.575 17 Si 0.748 3.252 18 H -0.183 1.183 19 H -0.211 1.211 20 H -0.158 1.158 21 C 0.043 3.957 22 C -0.149 4.149 23 C -0.144 4.144 24 C 0.033 3.967 25 F -0.124 7.124 26 C -0.148 4.148 27 C -0.181 4.181 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.088 0.912 33 H 0.169 0.831 34 H 0.178 0.822 35 H 0.175 0.825 36 H 0.149 0.851 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.077 0.923 40 H 0.157 0.843 41 H 0.176 0.824 42 H 0.173 0.827 43 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 12.133 0.655 -1.127 12.203 hybrid contribution -0.872 0.511 0.374 1.077 sum 11.262 1.166 -0.753 11.347 Atomic orbital electron populations 1.21641 0.95097 1.01469 1.01356 1.20720 0.95516 0.92683 1.04143 1.20040 0.96055 0.96493 0.92168 1.21294 0.99994 0.96040 0.97180 1.21705 0.96137 0.93980 0.99406 1.21416 1.00637 1.01336 0.91486 1.21366 0.97905 0.92206 1.00199 1.19601 1.06181 0.96309 0.92158 1.18847 0.77517 0.83897 0.83941 1.90288 1.53582 1.22557 1.76076 1.45595 1.38626 1.28141 1.12207 1.20146 0.91423 0.82852 0.97615 1.21194 0.98833 0.93814 1.42974 0.95115 1.25628 0.94274 1.03544 0.93733 1.70032 1.08626 1.35458 1.43344 0.86035 0.78999 0.79319 0.80874 1.18261 1.21060 1.15846 1.18363 0.98139 0.93959 0.85239 1.20928 1.00004 1.01589 0.92353 1.21085 1.01082 0.94723 0.97552 1.17768 1.02768 0.94591 0.81551 1.91448 1.94199 1.85325 1.41478 1.21289 0.99557 1.01442 0.92501 1.22626 1.02141 0.94617 0.98761 0.91686 0.95553 0.92519 0.88206 0.91210 0.83118 0.82170 0.82505 0.85077 0.92983 0.91668 0.92298 0.84260 0.82383 0.82727 0.80372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.89 71.98 0.71 -4.34 16 2 C -0.09 -3.02 5.63 29.85 0.17 -2.86 16 3 C -0.05 -1.54 5.17 -19.60 -0.10 -1.64 16 4 C -0.13 -3.32 9.68 22.23 0.22 -3.10 16 5 C -0.09 -2.13 10.04 22.33 0.22 -1.90 16 6 C -0.13 -3.18 10.03 22.23 0.22 -2.96 16 7 C -0.10 -3.00 7.49 22.53 0.17 -2.83 16 8 C -0.14 -5.04 4.88 -20.09 -0.10 -5.13 16 9 C 0.57 22.84 6.46 86.78 0.56 23.40 16 10 O -0.54 -22.65 11.58 -3.91 -0.05 -22.70 16 11 N -0.53 -21.93 2.69 -638.50 -1.72 -23.64 16 12 C 0.20 8.55 3.57 85.63 0.31 8.86 16 13 C -0.53 -27.81 9.85 25.60 0.25 -27.56 16 14 H 0.03 1.89 7.26 -2.91 -0.02 1.87 16 15 C 0.03 1.47 5.47 84.66 0.46 1.94 16 16 N -0.94 -54.52 13.96 21.45 0.30 -54.22 16 17 Si 0.93 38.53 27.47 68.60 1.88 40.42 16 18 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 19 H -0.28 -12.00 7.11 99.48 0.71 -11.29 16 20 H -0.24 -8.66 6.54 99.48 0.65 -8.00 16 21 C 0.14 5.53 6.46 38.15 0.25 5.78 16 22 C -0.13 -4.69 9.26 22.39 0.21 -4.49 16 23 C -0.13 -3.98 10.02 22.30 0.22 -3.76 16 24 C 0.05 1.70 7.30 22.38 0.16 1.86 16 25 F -0.15 -4.42 17.27 44.97 0.78 -3.65 16 26 C -0.13 -4.13 10.02 22.30 0.22 -3.91 16 27 C -0.16 -6.05 9.05 22.39 0.20 -5.85 16 28 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 29 H 0.03 1.19 7.27 -2.39 -0.02 1.17 16 30 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 31 H 0.10 2.52 8.07 -2.39 -0.02 2.50 16 32 H 0.07 2.52 5.84 -2.39 -0.01 2.51 16 33 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 34 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 35 H 0.16 2.71 8.06 -2.91 -0.02 2.69 16 36 H 0.13 3.68 7.62 -2.91 -0.02 3.65 16 37 H 0.05 2.11 5.27 -2.39 -0.01 2.09 16 38 H 0.07 2.63 3.89 -2.39 -0.01 2.62 16 39 H 0.27 14.64 8.31 -92.71 -0.77 13.86 16 40 H 0.14 5.09 6.12 -2.91 -0.02 5.07 16 41 H 0.16 4.10 8.06 -2.91 -0.02 4.07 16 42 H 0.16 4.08 8.06 -2.91 -0.02 4.05 16 43 H 0.18 7.01 4.53 -61.79 -0.28 6.73 16 Total: -1.00 -65.06 354.76 6.28 -58.78 By element: Atomic # 1 Polarization: 32.77 SS G_CDS: 0.72 Total: 33.50 kcal Atomic # 6 Polarization: -32.84 SS G_CDS: 4.36 Total: -28.48 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -1.42 Total: -77.87 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.05 Total: -22.70 kcal Atomic # 9 Polarization: -4.42 SS G_CDS: 0.78 Total: -3.65 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 1.88 Total: 40.42 kcal Total: -65.06 6.28 -58.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562422107.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.678 kcal (2) G-P(sol) polarization free energy of solvation -65.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds