Wall clock time and date at job start Tue Mar 31 2020 14:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39808 * 120.08705 * 2 1 4 4 C 1.36026 * 119.08208 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.40141 * 179.97438 * 4 3 2 6 6 N 1.35870 * 119.19347 * 0.02562 * 4 3 2 7 7 C 1.46492 * 119.93595 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47197 * 89.99613 * 7 6 4 9 9 O 1.21288 * 119.99843 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00206 * 179.97438 * 8 7 6 11 11 C 1.39124 * 120.00238 * 184.92058 * 10 8 7 12 12 C 1.38648 * 120.28450 * 331.07282 * 11 10 8 13 13 C 1.38222 * 120.03444 * 180.25500 * 12 11 10 14 14 C 1.38868 * 120.61523 * 359.74296 * 13 12 11 15 15 C 1.36463 * 120.57707 * 359.97438 * 14 13 12 16 16 C 1.40735 * 119.94377 * 0.02562 * 15 14 13 17 17 C 1.41070 * 120.30234 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00144 * 205.07764 * 17 16 15 19 19 C 1.39957 * 119.99928 * 25.07528 * 17 16 15 20 20 N 1.30859 * 120.00087 * 17.59364 * 19 17 16 21 21 Si 1.86806 * 120.00080 * 197.59044 * 19 17 16 22 22 H 1.48498 * 109.47009 * 265.01870 * 21 19 17 23 23 H 1.48498 * 109.46850 * 25.02199 * 21 19 17 24 24 H 1.48501 * 109.46939 * 145.01872 * 21 19 17 25 25 C 1.34619 * 120.12206 * 0.26632 * 6 4 3 26 26 O 1.21951 * 119.51664 * 179.72576 * 25 6 4 27 27 N 1.31770 * 120.08656 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46901 * 89.99821 * 1 2 3 29 29 H 1.09000 * 109.47364 * 209.99767 * 1 2 3 30 30 H 1.08998 * 109.47130 * 330.00381 * 1 2 3 31 31 H 1.08006 * 120.45697 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47194 * 270.02335 * 5 4 3 33 33 H 1.08999 * 109.47668 * 30.02494 * 5 4 3 34 34 H 1.09000 * 109.47320 * 150.02479 * 5 4 3 35 35 H 1.09001 * 109.47341 * 329.99970 * 7 6 4 36 36 H 1.09000 * 109.47247 * 209.99643 * 7 6 4 37 37 H 0.97006 * 119.99904 * 4.91693 * 10 8 7 38 38 H 1.08001 * 119.98390 * 359.97074 * 12 11 10 39 39 H 1.08001 * 119.69310 * 179.76062 * 13 12 11 40 40 H 1.07999 * 119.70812 * 180.02562 * 14 13 12 41 41 H 1.08004 * 120.02847 * 180.02562 * 15 14 13 42 42 H 0.97002 * 119.99956 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2078 1.2097 0.0000 4 6 3.5679 1.1858 0.0005 5 6 4.3532 2.4720 0.0000 6 7 4.2097 -0.0117 0.0005 7 6 5.6739 -0.0564 0.0005 8 6 6.1760 -0.0716 1.4213 9 8 5.3882 -0.0480 2.3432 10 7 7.5005 -0.1125 1.6676 11 6 7.9616 -0.2299 2.9750 12 6 7.2137 0.2738 4.0281 13 6 7.6793 0.1590 5.3245 14 6 8.8925 -0.4633 5.5877 15 6 9.6462 -0.9731 4.5707 16 6 9.1950 -0.8694 3.2417 17 6 9.9684 -1.3932 2.1845 18 1 9.8648 -0.9896 1.1882 19 6 10.8699 -2.4359 2.4269 20 7 10.7631 -3.1534 3.5161 21 14 12.2258 -2.8036 1.1956 22 1 11.7787 -3.8780 0.2732 23 1 12.5321 -1.5774 0.4159 24 1 13.4443 -3.2475 1.9190 25 6 3.5025 -1.1572 -0.0054 26 8 4.0899 -2.2259 -0.0105 27 7 2.1675 -1.1402 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6767 2.1502 0.0004 32 1 4.5425 2.7817 -1.0279 33 1 3.7830 3.2462 0.5134 34 1 5.3021 2.3186 0.5139 35 1 6.0643 0.8221 -0.5133 36 1 6.0100 -0.9570 -0.5133 37 1 8.1322 -0.0602 0.9333 38 1 6.2689 0.7601 3.8351 39 1 7.0940 0.5567 6.1403 40 1 9.2421 -0.5453 6.6062 41 1 10.5883 -1.4557 4.7856 42 1 11.3881 -3.8758 3.6842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574338663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:45 Heat of formation + Delta-G solvation = 3.807893 kcal Electronic energy + Delta-G solvation = -27422.631511 eV Core-core repulsion = 23561.421909 eV Total energy + Delta-G solvation = -3861.209603 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.92943 -39.60418 -37.40387 -37.29253 -36.04324 -33.93358 -33.73159 -32.36586 -30.82645 -29.72324 -29.29351 -28.21912 -26.76798 -25.21712 -23.15563 -22.40107 -21.61932 -20.83049 -19.64829 -18.52927 -17.71151 -17.37660 -17.19567 -16.16845 -16.03361 -15.67576 -15.14296 -14.97488 -14.38187 -14.21143 -13.95516 -13.85300 -13.76035 -13.47610 -13.38746 -13.04762 -12.79441 -12.69904 -12.46154 -12.29192 -12.17577 -11.79099 -11.48814 -11.40617 -11.18208 -11.07069 -10.79644 -10.70966 -10.58275 -10.15547 -9.79643 -9.60363 -9.43846 -9.26752 -8.94153 -8.41831 -7.46589 -7.04015 -6.82324 -4.42235 0.54293 1.62701 2.27040 2.49752 2.78736 3.00610 3.02883 3.17225 3.21988 3.61077 3.83378 3.87437 3.98447 4.05435 4.43180 4.56324 4.63142 4.92471 4.96037 5.00494 5.01809 5.09055 5.27601 5.30688 5.39726 5.45111 5.58704 5.69226 5.80062 6.17380 6.30158 6.43611 6.45397 6.55148 6.80700 6.98449 7.09493 7.21424 7.54493 7.63193 7.83887 7.88355 7.99917 8.05973 8.22848 8.29369 8.48325 8.68278 8.73622 8.90613 10.08519 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003389 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.051690 B = 8261.173730 C = 9012.974070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.269 3.731 3 C -0.300 4.300 4 C 0.228 3.772 5 C -0.134 4.134 6 N -0.494 5.494 7 C 0.068 3.932 8 C 0.485 3.515 9 O -0.526 6.526 10 N -0.626 5.626 11 C 0.007 3.993 12 C -0.089 4.089 13 C -0.231 4.231 14 C -0.108 4.108 15 C -0.156 4.156 16 C 0.107 3.893 17 C -0.466 4.466 18 H 0.074 0.926 19 C 0.078 3.922 20 N -0.786 5.786 21 Si 0.907 3.093 22 H -0.270 1.270 23 H -0.260 1.260 24 H -0.274 1.274 25 C 0.637 3.363 26 O -0.526 6.526 27 N -0.553 5.553 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.155 0.845 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.084 0.916 35 H 0.120 0.880 36 H 0.133 0.867 37 H 0.403 0.597 38 H 0.116 0.884 39 H 0.089 0.911 40 H 0.088 0.912 41 H 0.121 0.879 42 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.018 12.812 -10.230 19.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 C -0.326 4.326 4 C 0.108 3.892 5 C -0.191 4.191 6 N -0.208 5.208 7 C -0.059 4.059 8 C 0.270 3.730 9 O -0.404 6.404 10 N -0.268 5.268 11 C -0.087 4.087 12 C -0.109 4.109 13 C -0.251 4.251 14 C -0.127 4.127 15 C -0.176 4.176 16 C 0.103 3.897 17 C -0.495 4.495 18 H 0.092 0.908 19 C -0.141 4.141 20 N -0.411 5.411 21 Si 0.731 3.269 22 H -0.195 1.195 23 H -0.184 1.184 24 H -0.199 1.199 25 C 0.340 3.660 26 O -0.399 6.399 27 N -0.287 5.287 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.173 0.827 32 H 0.116 0.884 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.137 0.863 36 H 0.151 0.849 37 H 0.238 0.762 38 H 0.134 0.866 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.139 0.861 42 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.200 10.877 -9.482 18.267 hybrid contribution 1.422 0.342 -0.745 1.641 sum -9.778 11.219 -10.227 18.057 Atomic orbital electron populations 1.20907 0.87749 1.04510 1.03939 1.22163 0.97691 0.88297 0.81117 1.21162 0.91817 1.00531 1.19090 1.21147 0.93442 0.87756 0.86828 1.21226 1.01064 0.92300 1.04474 1.46070 1.08498 1.07288 1.58971 1.21867 0.78867 1.07389 0.97728 1.20370 0.83400 0.78967 0.90291 1.90674 1.55336 1.49537 1.44811 1.42695 1.05569 1.69569 1.08919 1.17644 0.97097 1.11757 0.82153 1.20812 0.98870 0.99284 0.91973 1.20309 0.99088 1.10455 0.95230 1.20483 0.95414 0.99307 0.97529 1.20878 1.00806 1.03983 0.91900 1.17374 0.89428 0.89196 0.93676 1.19238 1.19055 1.15520 0.95715 0.90772 1.25862 0.97519 0.94638 0.96040 1.69836 1.32429 1.13986 1.24810 0.86314 0.80222 0.79557 0.80768 1.19514 1.18391 1.19926 1.18101 0.85225 0.83265 0.79423 1.91021 1.68693 1.27404 1.52816 1.69775 1.05427 1.28066 1.25457 0.89048 0.89528 0.89669 0.82696 0.88399 0.88140 0.89698 0.86256 0.84948 0.76167 0.86596 0.89246 0.89361 0.86142 0.90652 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.83 10.20 36.00 0.37 -0.46 16 2 C 0.27 3.21 6.84 -82.03 -0.56 2.65 16 3 C -0.30 -2.90 9.41 -39.79 -0.37 -3.27 16 4 C 0.23 2.51 6.68 -81.60 -0.55 1.97 16 5 C -0.13 -0.91 9.14 36.00 0.33 -0.58 16 6 N -0.49 -7.46 2.08 -118.42 -0.25 -7.71 16 7 C 0.07 0.96 5.20 -5.20 -0.03 0.93 16 8 C 0.49 9.17 7.31 -10.99 -0.08 9.09 16 9 O -0.53 -11.99 13.50 5.55 0.07 -11.92 16 10 N -0.63 -12.34 5.10 -9.47 -0.05 -12.39 16 11 C 0.01 0.16 6.44 -83.17 -0.54 -0.37 16 12 C -0.09 -2.16 8.75 -39.44 -0.35 -2.51 16 13 C -0.23 -5.45 10.04 -39.35 -0.39 -5.84 16 14 C -0.11 -2.59 9.97 -39.99 -0.40 -2.99 16 15 C -0.16 -4.01 8.64 -39.28 -0.34 -4.35 16 16 C 0.11 2.75 5.58 -106.65 -0.60 2.16 16 17 C -0.47 -11.52 8.65 -37.87 -0.33 -11.85 16 18 H 0.07 1.65 6.69 -52.49 -0.35 1.30 16 19 C 0.08 1.89 5.14 -17.32 -0.09 1.81 16 20 N -0.79 -20.04 10.98 55.55 0.61 -19.43 16 21 Si 0.91 17.85 29.60 -169.99 -5.03 12.82 16 22 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 23 H -0.26 -4.95 7.11 56.52 0.40 -4.55 16 24 H -0.27 -5.34 7.11 56.52 0.40 -4.93 16 25 C 0.64 12.29 8.35 -88.18 -0.74 11.55 16 26 O -0.53 -12.35 16.73 4.96 0.08 -12.27 16 27 N -0.55 -9.52 10.41 -12.80 -0.13 -9.65 16 28 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.08 0.40 8.09 -51.93 -0.42 -0.02 16 31 H 0.16 0.86 8.06 -52.48 -0.42 0.43 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.10 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.08 0.70 6.31 -51.93 -0.33 0.38 16 35 H 0.12 1.03 6.58 -51.93 -0.34 0.69 16 36 H 0.13 1.91 7.38 -51.93 -0.38 1.53 16 37 H 0.40 6.72 7.34 -40.82 -0.30 6.43 16 38 H 0.12 2.76 5.74 -52.49 -0.30 2.46 16 39 H 0.09 1.90 8.06 -52.49 -0.42 1.47 16 40 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 41 H 0.12 3.16 6.19 -52.48 -0.32 2.83 16 42 H 0.28 6.56 8.30 -40.82 -0.34 6.22 16 LS Contribution 355.33 15.07 5.35 5.35 Total: -1.00 -37.26 355.33 -8.83 -46.09 By element: Atomic # 1 Polarization: 16.02 SS G_CDS: -4.84 Total: 11.18 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -4.65 Total: -2.07 kcal Atomic # 7 Polarization: -49.36 SS G_CDS: 0.18 Total: -49.17 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.16 Total: -24.19 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -5.03 Total: 12.82 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -37.26 -8.83 -46.09 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574338663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.893 kcal (2) G-P(sol) polarization free energy of solvation -37.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.085 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds