Wall clock time and date at job start Tue Mar 31 2020 14:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39808 * 120.08705 * 2 1 4 4 C 1.36026 * 119.08208 * 179.97438 * 3 2 1 5 5 C 1.50698 * 120.40141 * 179.97438 * 4 3 2 6 6 N 1.35870 * 119.19347 * 0.02562 * 4 3 2 7 7 C 1.46492 * 119.93595 * 179.97438 * 6 4 3 8 8 C 1.50701 * 109.47197 * 89.99613 * 7 6 4 9 9 O 1.21288 * 119.99843 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00206 * 179.97438 * 8 7 6 11 11 C 1.39124 * 120.00238 * 184.92058 * 10 8 7 12 12 C 1.38648 * 120.28450 * 331.07282 * 11 10 8 13 13 C 1.38222 * 120.03444 * 180.25500 * 12 11 10 14 14 C 1.38868 * 120.61523 * 359.74296 * 13 12 11 15 15 C 1.36463 * 120.57707 * 359.97438 * 14 13 12 16 16 C 1.40735 * 119.94377 * 0.02562 * 15 14 13 17 17 C 1.41070 * 120.30234 * 179.97438 * 16 15 14 18 18 H 1.07998 * 120.00144 * 205.07764 * 17 16 15 19 19 C 1.39957 * 119.99928 * 25.07528 * 17 16 15 20 20 N 1.30859 * 120.00087 * 17.59364 * 19 17 16 21 21 Si 1.86806 * 120.00080 * 197.59044 * 19 17 16 22 22 H 1.48498 * 109.47009 * 265.01870 * 21 19 17 23 23 H 1.48498 * 109.46850 * 25.02199 * 21 19 17 24 24 H 1.48501 * 109.46939 * 145.01872 * 21 19 17 25 25 C 1.34619 * 120.12206 * 0.26632 * 6 4 3 26 26 O 1.21951 * 119.51664 * 179.72576 * 25 6 4 27 27 N 1.31770 * 120.08656 * 179.97438 * 2 1 3 28 28 H 1.09001 * 109.46901 * 89.99821 * 1 2 3 29 29 H 1.09000 * 109.47364 * 209.99767 * 1 2 3 30 30 H 1.08998 * 109.47130 * 330.00381 * 1 2 3 31 31 H 1.08006 * 120.45697 * 0.02562 * 3 2 1 32 32 H 1.09003 * 109.47194 * 270.02335 * 5 4 3 33 33 H 1.08999 * 109.47668 * 30.02494 * 5 4 3 34 34 H 1.09000 * 109.47320 * 150.02479 * 5 4 3 35 35 H 1.09001 * 109.47341 * 329.99970 * 7 6 4 36 36 H 1.09000 * 109.47247 * 209.99643 * 7 6 4 37 37 H 0.97006 * 119.99904 * 4.91693 * 10 8 7 38 38 H 1.08001 * 119.98390 * 359.97074 * 12 11 10 39 39 H 1.08001 * 119.69310 * 179.76062 * 13 12 11 40 40 H 1.07999 * 119.70812 * 180.02562 * 14 13 12 41 41 H 1.08004 * 120.02847 * 180.02562 * 15 14 13 42 42 H 0.97002 * 119.99956 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2078 1.2097 0.0000 4 6 3.5679 1.1858 0.0005 5 6 4.3532 2.4720 0.0000 6 7 4.2097 -0.0117 0.0005 7 6 5.6739 -0.0564 0.0005 8 6 6.1760 -0.0716 1.4213 9 8 5.3882 -0.0480 2.3432 10 7 7.5005 -0.1125 1.6676 11 6 7.9616 -0.2299 2.9750 12 6 7.2137 0.2738 4.0281 13 6 7.6793 0.1590 5.3245 14 6 8.8925 -0.4633 5.5877 15 6 9.6462 -0.9731 4.5707 16 6 9.1950 -0.8694 3.2417 17 6 9.9684 -1.3932 2.1845 18 1 9.8648 -0.9896 1.1882 19 6 10.8699 -2.4359 2.4269 20 7 10.7631 -3.1534 3.5161 21 14 12.2258 -2.8036 1.1956 22 1 11.7787 -3.8780 0.2732 23 1 12.5321 -1.5774 0.4159 24 1 13.4443 -3.2475 1.9190 25 6 3.5025 -1.1572 -0.0054 26 8 4.0899 -2.2259 -0.0105 27 7 2.1675 -1.1402 0.0005 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5138 31 1 1.6767 2.1502 0.0004 32 1 4.5425 2.7817 -1.0279 33 1 3.7830 3.2462 0.5134 34 1 5.3021 2.3186 0.5139 35 1 6.0643 0.8221 -0.5133 36 1 6.0100 -0.9570 -0.5133 37 1 8.1322 -0.0602 0.9333 38 1 6.2689 0.7601 3.8351 39 1 7.0940 0.5567 6.1403 40 1 9.2421 -0.5453 6.6062 41 1 10.5883 -1.4557 4.7856 42 1 11.3881 -3.8758 3.6842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000574338663.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:44 Heat of formation + Delta-G solvation = -22.771049 kcal Electronic energy + Delta-G solvation = -27423.784061 eV Core-core repulsion = 23561.421909 eV Total energy + Delta-G solvation = -3862.362152 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 327.137 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.05017 -41.19565 -39.10065 -38.57136 -37.16234 -35.62774 -35.57091 -33.34582 -31.86480 -31.55950 -30.62525 -29.38589 -27.84385 -27.00377 -24.29773 -23.75964 -23.04839 -22.43558 -21.29852 -19.56565 -19.33670 -18.91905 -18.54956 -17.69300 -17.25286 -17.09042 -16.75958 -16.44160 -16.01982 -15.37035 -15.09604 -14.94832 -14.67527 -14.55848 -14.49722 -14.32542 -14.18668 -14.06500 -13.72574 -13.50534 -13.24836 -13.09788 -12.96176 -12.85592 -12.78561 -12.44903 -12.21336 -12.02783 -11.98497 -11.73448 -11.59457 -11.14543 -11.07709 -10.70496 -10.60980 -9.53256 -9.38301 -8.87400 -8.64177 -6.31978 -0.39492 0.63107 0.76006 1.00464 1.17797 1.39364 1.49436 1.55334 1.59700 2.18376 2.22921 2.70587 2.74473 3.14884 3.23457 3.49710 3.61914 3.70450 3.73421 4.01322 4.24479 4.37192 4.45828 4.48253 4.57842 4.61494 4.65545 4.73025 4.79339 4.91612 4.97988 5.00297 5.17320 5.18420 5.26128 5.38006 5.41762 5.47470 5.70377 5.78375 6.05606 6.14244 6.18202 6.54173 6.64160 6.68953 6.87926 6.93985 7.07319 7.22109 8.29913 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.016051 B = 0.003389 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1744.051690 B = 8261.173730 C = 9012.974070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.262 3.738 3 C -0.286 4.286 4 C 0.213 3.787 5 C -0.131 4.131 6 N -0.499 5.499 7 C 0.077 3.923 8 C 0.486 3.514 9 O -0.568 6.568 10 N -0.623 5.623 11 C 0.004 3.996 12 C -0.104 4.104 13 C -0.237 4.237 14 C -0.115 4.115 15 C -0.181 4.181 16 C 0.077 3.923 17 C -0.488 4.488 18 H 0.092 0.908 19 C 0.033 3.967 20 N -0.826 5.826 21 Si 0.984 3.016 22 H -0.270 1.270 23 H -0.245 1.245 24 H -0.271 1.271 25 C 0.623 3.377 26 O -0.599 6.599 27 N -0.607 5.607 28 H 0.115 0.885 29 H 0.072 0.928 30 H 0.121 0.879 31 H 0.208 0.792 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.070 0.930 35 H 0.181 0.819 36 H 0.125 0.875 37 H 0.417 0.583 38 H 0.118 0.882 39 H 0.112 0.888 40 H 0.110 0.890 41 H 0.107 0.893 42 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.906 16.033 -12.243 23.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 C -0.310 4.310 4 C 0.095 3.905 5 C -0.187 4.187 6 N -0.212 5.212 7 C -0.049 4.049 8 C 0.273 3.727 9 O -0.448 6.448 10 N -0.266 5.266 11 C -0.091 4.091 12 C -0.124 4.124 13 C -0.257 4.257 14 C -0.133 4.133 15 C -0.201 4.201 16 C 0.074 3.926 17 C -0.517 4.517 18 H 0.110 0.890 19 C -0.182 4.182 20 N -0.451 5.451 21 Si 0.804 3.196 22 H -0.195 1.195 23 H -0.168 1.168 24 H -0.196 1.196 25 C 0.326 3.674 26 O -0.479 6.479 27 N -0.345 5.345 28 H 0.133 0.867 29 H 0.091 0.909 30 H 0.140 0.860 31 H 0.225 0.775 32 H 0.153 0.847 33 H 0.145 0.855 34 H 0.089 0.911 35 H 0.198 0.802 36 H 0.143 0.857 37 H 0.255 0.745 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.129 0.871 41 H 0.125 0.875 42 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.135 14.205 -11.519 21.948 hybrid contribution 1.500 -0.527 -0.079 1.591 sum -10.636 13.678 -11.598 20.850 Atomic orbital electron populations 1.21108 0.84435 1.05588 1.05675 1.23072 0.99878 0.87901 0.78611 1.21805 0.91471 1.01622 1.16101 1.22095 0.94676 0.87709 0.85990 1.21437 1.00017 0.90286 1.06942 1.45957 1.08628 1.07865 1.58755 1.21946 0.78800 1.09871 0.94261 1.21181 0.82488 0.77001 0.92037 1.90638 1.56195 1.51122 1.46804 1.42663 1.06485 1.69587 1.07885 1.17800 0.96572 1.10633 0.84073 1.21003 0.99060 0.99819 0.92512 1.20622 0.99121 1.10073 0.95881 1.20720 0.95430 0.98870 0.98309 1.20932 1.01002 1.05314 0.92868 1.17743 0.90502 0.90161 0.94221 1.19631 1.19697 1.15965 0.96366 0.88966 1.26830 0.99464 0.94033 0.97907 1.69917 1.33549 1.14746 1.26917 0.85162 0.76703 0.79664 0.78040 1.19473 1.16807 1.19607 1.18401 0.86123 0.83532 0.79315 1.90937 1.70085 1.29998 1.56866 1.69716 1.04810 1.31075 1.28890 0.86658 0.90919 0.86040 0.77470 0.84668 0.85545 0.91107 0.80199 0.85684 0.74543 0.86410 0.86976 0.87149 0.87461 0.90152 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.30 10.20 71.23 0.73 -0.57 16 2 C 0.26 5.78 6.84 42.95 0.29 6.07 16 3 C -0.29 -4.41 9.41 22.14 0.21 -4.20 16 4 C 0.21 4.04 6.68 41.42 0.28 4.32 16 5 C -0.13 -1.15 9.14 71.24 0.65 -0.50 16 6 N -0.50 -14.72 2.08 -646.76 -1.34 -16.06 16 7 C 0.08 2.09 5.20 85.63 0.45 2.54 16 8 C 0.49 18.37 7.31 87.66 0.64 19.01 16 9 O -0.57 -26.30 13.50 -3.05 -0.04 -26.34 16 10 N -0.62 -24.62 5.10 -302.27 -1.54 -26.16 16 11 C 0.00 0.17 6.44 38.88 0.25 0.42 16 12 C -0.10 -5.09 8.75 22.36 0.20 -4.89 16 13 C -0.24 -11.25 10.04 22.42 0.22 -11.03 16 14 C -0.11 -5.57 9.97 22.01 0.22 -5.35 16 15 C -0.18 -9.63 8.64 22.47 0.19 -9.43 16 16 C 0.08 4.09 5.58 -21.18 -0.12 3.97 16 17 C -0.49 -24.41 8.65 23.38 0.20 -24.21 16 18 H 0.09 4.09 6.69 -2.91 -0.02 4.07 16 19 C 0.03 1.61 5.14 85.25 0.44 2.05 16 20 N -0.83 -43.29 10.98 21.83 0.24 -43.05 16 21 Si 0.98 36.49 29.60 68.60 2.03 38.52 16 22 H -0.27 -9.93 7.11 99.48 0.71 -9.22 16 23 H -0.25 -8.42 7.11 99.48 0.71 -7.71 16 24 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 25 C 0.62 24.96 8.35 179.50 1.50 26.46 16 26 O -0.60 -30.18 16.73 -5.16 -0.09 -30.27 16 27 N -0.61 -21.42 10.41 -313.22 -3.26 -24.68 16 28 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.12 0.55 8.09 -2.39 -0.02 0.53 16 31 H 0.21 0.92 8.06 -2.91 -0.02 0.89 16 32 H 0.14 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.13 0.54 8.09 -2.39 -0.02 0.52 16 34 H 0.07 0.90 6.31 -2.39 -0.02 0.88 16 35 H 0.18 2.51 6.58 -2.39 -0.02 2.50 16 36 H 0.13 3.66 7.38 -2.39 -0.02 3.64 16 37 H 0.42 13.67 7.34 -92.70 -0.68 12.99 16 38 H 0.12 5.68 5.74 -2.91 -0.02 5.66 16 39 H 0.11 4.68 8.06 -2.91 -0.02 4.66 16 40 H 0.11 4.71 8.06 -2.91 -0.02 4.69 16 41 H 0.11 5.88 6.19 -2.91 -0.02 5.87 16 42 H 0.29 13.73 8.30 -92.71 -0.77 12.96 16 Total: -1.00 -90.18 355.33 2.75 -87.43 By element: Atomic # 1 Polarization: 35.56 SS G_CDS: 0.40 Total: 35.96 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: 6.35 Total: 4.66 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -5.90 Total: -109.95 kcal Atomic # 8 Polarization: -56.48 SS G_CDS: -0.13 Total: -56.61 kcal Atomic # 14 Polarization: 36.49 SS G_CDS: 2.03 Total: 38.52 kcal Total: -90.18 2.75 -87.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574338663.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.658 kcal (2) G-P(sol) polarization free energy of solvation -90.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds