Wall clock time and date at job start Tue Mar 31 2020 15:10:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.90320 * 2 1 4 4 N 1.40084 * 108.20543 * 180.26208 * 3 2 1 5 5 C 1.46503 * 126.03939 * 179.74111 * 4 3 2 6 6 C 1.34950 * 107.92408 * 359.71430 * 4 3 2 7 7 C 1.35318 * 107.74749 * 0.02562 * 6 4 3 8 8 S 1.76194 * 126.03922 * 180.02562 * 7 6 4 9 9 O 1.42100 * 106.40256 * 1.47643 * 8 7 6 10 10 O 1.42105 * 106.40095 * 228.55762 * 8 7 6 11 11 N 1.65601 * 107.22148 * 115.02168 * 8 7 6 12 12 C 1.46919 * 120.63434 * 89.99515 * 11 8 7 13 13 C 1.53195 * 108.89273 * 126.34385 * 12 11 8 14 14 C 1.53346 * 109.14901 * 54.57640 * 13 12 11 15 15 C 1.53004 * 109.41904 * 178.67276 * 14 13 12 16 16 C 1.50701 * 109.47085 * 295.13082 * 15 14 13 17 17 H 1.07998 * 120.00293 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99472 * 179.97438 * 16 15 14 19 19 N 1.31505 * 120.00682 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99519 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47056 * 90.00284 * 20 18 16 22 22 H 1.48503 * 109.47155 * 209.99821 * 20 18 16 23 23 H 1.48497 * 109.47425 * 330.00030 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 14 13 12 25 25 C 1.46933 * 120.62562 * 270.01589 * 11 8 7 26 26 H 1.08994 * 109.47174 * 270.21609 * 1 2 3 27 27 H 1.09004 * 109.46976 * 30.20710 * 1 2 3 28 28 H 1.08998 * 109.47522 * 150.20940 * 1 2 3 29 29 H 1.09003 * 109.46963 * 269.97705 * 5 4 3 30 30 H 1.08998 * 109.46564 * 29.97127 * 5 4 3 31 31 H 1.09000 * 109.47229 * 149.97255 * 5 4 3 32 32 H 1.08000 * 126.12717 * 179.97438 * 6 4 3 33 33 H 1.09002 * 109.58751 * 246.20335 * 12 11 8 34 34 H 1.08996 * 109.58750 * 6.48520 * 12 11 8 35 35 H 1.08997 * 109.49914 * 174.65962 * 13 12 11 36 36 H 1.09002 * 109.49585 * 294.75599 * 13 12 11 37 37 H 1.09001 * 109.42242 * 58.75065 * 14 13 12 38 38 H 1.09001 * 109.46592 * 55.13132 * 15 14 13 39 39 H 1.08997 * 109.47133 * 175.12697 * 15 14 13 40 40 H 0.97001 * 120.00836 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.50232 * 301.42239 * 24 14 13 42 42 H 1.09007 * 109.52628 * 181.33900 * 24 14 13 43 43 H 1.08994 * 109.58580 * 353.37875 * 25 11 8 44 44 H 1.09006 * 109.57831 * 113.65367 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6339 -0.0061 5 6 4.7900 1.5005 -0.0135 6 6 3.6141 -0.7156 -0.0033 7 6 2.3270 -1.1331 0.0037 8 16 1.7807 -2.8082 0.0104 9 8 2.9519 -3.6122 0.0421 10 8 0.7937 -2.9124 -1.0067 11 7 0.9992 -3.0633 1.4480 12 6 -0.4455 -2.8246 1.5674 13 6 -1.1125 -4.0867 2.1235 14 6 -0.4268 -4.4808 3.4372 15 6 -1.1098 -5.7219 4.0152 16 6 -2.5306 -5.3855 4.3884 17 1 -2.9085 -4.3863 4.2296 18 6 -3.3480 -6.3534 4.9324 19 7 -2.8878 -7.5700 5.1262 20 14 -5.1090 -5.9362 5.3957 21 1 -5.9994 -6.1894 4.2346 22 1 -5.5339 -6.7830 6.5392 23 1 -5.1935 -4.5047 5.7814 24 6 1.0494 -4.7871 3.1744 25 6 1.7378 -3.5322 2.6285 26 1 -0.3633 0.0039 1.0276 27 1 -0.3633 0.8882 -0.5171 28 1 -0.3634 -0.8918 -0.5106 29 1 5.0780 1.7134 -1.0430 30 1 4.5589 2.4340 0.4996 31 1 5.6119 0.9988 0.4974 32 1 4.4890 -1.3488 -0.0070 33 1 -0.6231 -1.9890 2.2443 34 1 -0.8602 -2.5944 0.5860 35 1 -2.1690 -3.8899 2.3054 36 1 -1.0119 -4.8987 1.4033 37 1 -0.5060 -3.6585 4.1483 38 1 -1.1085 -6.5175 3.2700 39 1 -0.5701 -6.0539 4.9020 40 1 -3.4627 -8.2508 5.5093 41 1 1.1295 -5.5926 2.4445 42 1 1.5299 -5.0900 4.1048 43 1 2.7632 -3.7711 2.3468 44 1 1.7404 -2.7532 3.3909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000578763658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:10 Heat of formation + Delta-G solvation = -11.928017 kcal Electronic energy + Delta-G solvation = -26628.882263 eV Core-core repulsion = 22902.434251 eV Total energy + Delta-G solvation = -3726.448012 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.60829 -38.24115 -37.17354 -35.71684 -34.44570 -33.87034 -31.89923 -30.97124 -30.68960 -29.74562 -27.61795 -26.03179 -24.17535 -22.83722 -22.13568 -21.34049 -20.62963 -19.53432 -18.64053 -17.77574 -17.29798 -16.24449 -16.06337 -15.89780 -15.68534 -14.66758 -14.51188 -14.26794 -14.03729 -13.88731 -13.60382 -13.54050 -13.26339 -13.18749 -12.99072 -12.59965 -12.56485 -12.25524 -11.98033 -11.90408 -11.78419 -11.70853 -11.62858 -11.12989 -10.86547 -10.75276 -10.68500 -10.61994 -10.33544 -10.06380 -9.71660 -9.57121 -9.43654 -9.29131 -8.93103 -8.59551 -8.30987 -5.95861 -3.97447 0.51741 1.26574 2.00093 2.03382 3.14750 3.34150 3.40853 3.43031 3.80041 4.03713 4.22197 4.47552 4.48849 4.57995 4.62633 4.88947 4.91327 4.93805 5.15817 5.35165 5.39599 5.42874 5.50445 5.57818 5.60708 5.63560 5.76519 5.87404 5.92019 6.06773 6.18441 6.21329 6.42960 6.47894 6.51326 6.74528 6.77255 7.07094 7.10024 7.16603 7.19229 7.72103 7.87757 8.04691 8.47211 9.09309 9.66154 11.15462 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.003053 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.595769 B = 9168.325304 C = 9565.109823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.163 3.837 3 N -0.297 5.297 4 N -0.366 5.366 5 C 0.093 3.907 6 C 0.175 3.825 7 C -0.814 4.814 8 S 2.721 3.279 9 O -0.968 6.968 10 O -0.957 6.957 11 N -0.990 5.990 12 C 0.114 3.886 13 C -0.116 4.116 14 C -0.079 4.079 15 C 0.026 3.974 16 C -0.515 4.515 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.896 5.896 20 Si 0.888 3.112 21 H -0.281 1.281 22 H -0.288 1.288 23 H -0.274 1.274 24 C -0.127 4.127 25 C 0.122 3.878 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.081 0.919 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.193 0.807 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.084 0.916 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.016 0.984 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.268 17.244 -9.806 25.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.006 4.006 3 N -0.118 5.118 4 N -0.143 5.143 5 C -0.048 4.048 6 C 0.022 3.978 7 C -0.911 4.911 8 S 2.809 3.191 9 O -0.958 6.958 10 O -0.947 6.947 11 N -0.830 5.830 12 C -0.011 4.011 13 C -0.155 4.155 14 C -0.098 4.098 15 C -0.011 4.011 16 C -0.553 4.553 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.536 5.536 20 Si 0.717 3.283 21 H -0.207 1.207 22 H -0.214 1.214 23 H -0.199 1.199 24 C -0.166 4.166 25 C -0.003 4.003 26 H 0.110 0.890 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.113 0.887 31 H 0.112 0.888 32 H 0.210 0.790 33 H 0.083 0.917 34 H 0.105 0.895 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.034 0.966 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.102 0.898 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 15.560 17.947 -10.405 25.932 hybrid contribution -0.683 0.045 0.638 0.936 sum 14.877 17.992 -9.767 25.307 Atomic orbital electron populations 1.20739 0.85694 1.05494 1.04472 1.21876 0.96751 0.88447 0.93518 1.77377 0.85972 1.22353 1.26129 1.48982 1.06309 1.04902 1.54058 1.22045 0.83396 0.95322 1.04027 1.22479 0.98220 0.85087 0.92027 1.31760 1.00470 1.25337 1.33559 1.01032 0.72952 0.72519 0.72589 1.93524 1.49587 1.66176 1.86524 1.93550 1.59899 1.86190 1.55079 1.57553 1.17168 1.80600 1.27684 1.21741 0.77959 0.99547 1.01840 1.21914 1.00367 0.95622 0.97578 1.21209 0.92126 1.00744 0.95693 1.19140 0.94694 0.91564 0.95688 1.21252 0.96916 0.96446 1.40673 0.92557 1.25020 0.98355 0.95129 0.96009 1.69958 1.36156 1.02453 1.44991 0.86656 0.85379 0.78242 0.78058 1.20728 1.21406 1.19943 1.21975 0.97599 0.96208 1.00783 1.21501 0.95000 0.97164 0.86645 0.88968 0.89640 0.88379 0.90074 0.88722 0.88808 0.79005 0.91707 0.89546 0.89710 0.92068 0.92385 0.96551 0.96661 0.93098 0.91805 0.91174 0.89804 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.08 9.52 36.01 0.34 -0.74 16 2 C 0.16 2.03 7.22 -82.41 -0.59 1.43 16 3 N -0.30 -3.71 12.58 33.67 0.42 -3.29 16 4 N -0.37 -3.59 4.01 -68.16 -0.27 -3.86 16 5 C 0.09 0.44 11.47 59.85 0.69 1.12 16 6 C 0.18 1.76 11.12 -17.22 -0.19 1.57 16 7 C -0.81 -9.99 6.15 -40.01 -0.25 -10.24 16 8 S 2.72 38.11 5.60 -107.50 -0.60 37.51 16 9 O -0.97 -15.04 16.33 -57.17 -0.93 -15.97 16 10 O -0.96 -15.53 15.25 -57.17 -0.87 -16.40 16 11 N -0.99 -13.65 3.29 -113.52 -0.37 -14.03 16 12 C 0.11 1.58 5.72 -3.71 -0.02 1.56 16 13 C -0.12 -2.03 5.21 -26.45 -0.14 -2.17 16 14 C -0.08 -1.51 2.10 -90.42 -0.19 -1.70 16 15 C 0.03 0.65 4.45 -27.88 -0.12 0.52 16 16 C -0.51 -13.92 8.39 -34.44 -0.29 -14.21 16 17 H 0.06 1.46 7.06 -52.49 -0.37 1.09 16 18 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 19 N -0.90 -26.67 13.28 55.43 0.74 -25.93 16 20 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 21 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 24 C -0.13 -2.06 5.36 -26.62 -0.14 -2.21 16 25 C 0.12 1.64 6.48 -3.71 -0.02 1.61 16 26 H 0.09 0.81 7.88 -51.93 -0.41 0.40 16 27 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.10 1.04 5.52 -51.93 -0.29 0.75 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 32 H 0.19 1.29 8.06 -52.49 -0.42 0.87 16 33 H 0.06 0.78 7.95 -51.93 -0.41 0.37 16 34 H 0.09 1.10 5.71 -51.93 -0.30 0.80 16 35 H 0.08 1.56 6.93 -51.93 -0.36 1.20 16 36 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 37 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 43 H 0.08 1.03 6.92 -51.93 -0.36 0.67 16 44 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 363.73 15.07 5.48 5.48 Total: -1.00 -35.69 363.73 -9.17 -44.85 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: -6.70 Total: -2.70 kcal Atomic # 6 Polarization: -20.94 SS G_CDS: -1.03 Total: -21.97 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: 0.51 Total: -47.11 kcal Atomic # 8 Polarization: -30.57 SS G_CDS: -1.81 Total: -32.37 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 38.11 SS G_CDS: -0.60 Total: 37.51 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -35.69 -9.17 -44.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578763658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.926 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.762 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds