Wall clock time and date at job start Tue Mar 31 2020 15:10:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30835 * 125.90320 * 2 1 4 4 N 1.40084 * 108.20543 * 180.26208 * 3 2 1 5 5 C 1.46503 * 126.03939 * 179.74111 * 4 3 2 6 6 C 1.34950 * 107.92408 * 359.71430 * 4 3 2 7 7 C 1.35318 * 107.74749 * 0.02562 * 6 4 3 8 8 S 1.76194 * 126.03922 * 180.02562 * 7 6 4 9 9 O 1.42100 * 106.40256 * 1.47643 * 8 7 6 10 10 O 1.42105 * 106.40095 * 228.55762 * 8 7 6 11 11 N 1.65601 * 107.22148 * 115.02168 * 8 7 6 12 12 C 1.46919 * 120.63434 * 89.99515 * 11 8 7 13 13 C 1.53195 * 108.89273 * 126.34385 * 12 11 8 14 14 C 1.53346 * 109.14901 * 54.57640 * 13 12 11 15 15 C 1.53004 * 109.41904 * 178.67276 * 14 13 12 16 16 C 1.50701 * 109.47085 * 295.13082 * 15 14 13 17 17 H 1.07998 * 120.00293 * 359.97438 * 16 15 14 18 18 C 1.37876 * 119.99472 * 179.97438 * 16 15 14 19 19 N 1.31505 * 120.00682 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 119.99519 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47056 * 90.00284 * 20 18 16 22 22 H 1.48503 * 109.47155 * 209.99821 * 20 18 16 23 23 H 1.48497 * 109.47425 * 330.00030 * 20 18 16 24 24 C 1.53034 * 109.61010 * 298.71225 * 14 13 12 25 25 C 1.46933 * 120.62562 * 270.01589 * 11 8 7 26 26 H 1.08994 * 109.47174 * 270.21609 * 1 2 3 27 27 H 1.09004 * 109.46976 * 30.20710 * 1 2 3 28 28 H 1.08998 * 109.47522 * 150.20940 * 1 2 3 29 29 H 1.09003 * 109.46963 * 269.97705 * 5 4 3 30 30 H 1.08998 * 109.46564 * 29.97127 * 5 4 3 31 31 H 1.09000 * 109.47229 * 149.97255 * 5 4 3 32 32 H 1.08000 * 126.12717 * 179.97438 * 6 4 3 33 33 H 1.09002 * 109.58751 * 246.20335 * 12 11 8 34 34 H 1.08996 * 109.58750 * 6.48520 * 12 11 8 35 35 H 1.08997 * 109.49914 * 174.65962 * 13 12 11 36 36 H 1.09002 * 109.49585 * 294.75599 * 13 12 11 37 37 H 1.09001 * 109.42242 * 58.75065 * 14 13 12 38 38 H 1.09001 * 109.46592 * 55.13132 * 15 14 13 39 39 H 1.08997 * 109.47133 * 175.12697 * 15 14 13 40 40 H 0.97001 * 120.00836 * 179.97438 * 19 18 16 41 41 H 1.08994 * 109.50232 * 301.42239 * 24 14 13 42 42 H 1.09007 * 109.52628 * 181.33900 * 24 14 13 43 43 H 1.08994 * 109.58580 * 353.37875 * 25 11 8 44 44 H 1.09006 * 109.57831 * 113.65367 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2743 1.0598 0.0000 4 7 3.6088 0.6339 -0.0061 5 6 4.7900 1.5005 -0.0135 6 6 3.6141 -0.7156 -0.0033 7 6 2.3270 -1.1331 0.0037 8 16 1.7807 -2.8082 0.0104 9 8 2.9519 -3.6122 0.0421 10 8 0.7937 -2.9124 -1.0067 11 7 0.9992 -3.0633 1.4480 12 6 -0.4455 -2.8246 1.5674 13 6 -1.1125 -4.0867 2.1235 14 6 -0.4268 -4.4808 3.4372 15 6 -1.1098 -5.7219 4.0152 16 6 -2.5306 -5.3855 4.3884 17 1 -2.9085 -4.3863 4.2296 18 6 -3.3480 -6.3534 4.9324 19 7 -2.8878 -7.5700 5.1262 20 14 -5.1090 -5.9362 5.3957 21 1 -5.9994 -6.1894 4.2346 22 1 -5.5339 -6.7830 6.5392 23 1 -5.1935 -4.5047 5.7814 24 6 1.0494 -4.7871 3.1744 25 6 1.7378 -3.5322 2.6285 26 1 -0.3633 0.0039 1.0276 27 1 -0.3633 0.8882 -0.5171 28 1 -0.3634 -0.8918 -0.5106 29 1 5.0780 1.7134 -1.0430 30 1 4.5589 2.4340 0.4996 31 1 5.6119 0.9988 0.4974 32 1 4.4890 -1.3488 -0.0070 33 1 -0.6231 -1.9890 2.2443 34 1 -0.8602 -2.5944 0.5860 35 1 -2.1690 -3.8899 2.3054 36 1 -1.0119 -4.8987 1.4033 37 1 -0.5060 -3.6585 4.1483 38 1 -1.1085 -6.5175 3.2700 39 1 -0.5701 -6.0539 4.9020 40 1 -3.4627 -8.2508 5.5093 41 1 1.1295 -5.5926 2.4445 42 1 1.5299 -5.0900 4.1048 43 1 2.7632 -3.7711 2.3468 44 1 1.7404 -2.7532 3.3909 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000578763658.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:09 Heat of formation + Delta-G solvation = -36.904239 kcal Electronic energy + Delta-G solvation = -26629.965313 eV Core-core repulsion = 22902.434251 eV Total energy + Delta-G solvation = -3727.531062 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 327.140 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.37841 -39.55514 -38.32285 -36.87680 -35.65788 -35.08695 -33.71659 -31.95014 -31.69658 -30.44184 -29.42238 -26.67019 -25.90499 -24.11644 -23.03323 -22.80075 -21.44907 -20.95457 -19.66288 -18.82559 -18.34819 -18.31799 -16.96263 -16.67566 -16.62505 -16.48572 -15.55582 -15.25905 -15.23441 -15.04911 -14.75524 -14.63195 -14.38706 -14.25820 -13.92735 -13.62709 -13.53546 -13.28972 -13.26995 -13.15777 -13.07077 -12.94544 -12.77686 -12.67953 -12.55126 -12.40291 -12.11127 -11.94943 -11.71104 -11.61631 -11.23943 -10.92629 -10.75710 -10.52505 -10.47056 -10.20534 -9.82588 -8.11778 -6.20615 -0.54055 0.51117 1.13224 1.42962 1.44278 1.45009 1.55435 2.11150 2.46493 2.82381 3.18377 3.22120 3.52804 3.68857 3.80801 3.98436 4.14225 4.14787 4.30615 4.31731 4.36485 4.40432 4.52696 4.58998 4.64103 4.67165 4.70785 4.83848 4.89098 4.94234 4.96591 5.05333 5.16244 5.37173 5.39658 5.42970 5.45963 5.50849 5.65151 5.75059 5.80978 5.90775 5.98017 6.35868 6.37339 6.96928 7.47824 9.00261 Molecular weight = 327.14amu Principal moments of inertia in cm(-1) A = 0.023124 B = 0.003053 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.595769 B = 9168.325304 C = 9565.109823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.152 3.848 3 N -0.324 5.324 4 N -0.362 5.362 5 C 0.081 3.919 6 C 0.181 3.819 7 C -0.830 4.830 8 S 2.735 3.265 9 O -0.987 6.987 10 O -0.986 6.986 11 N -0.994 5.994 12 C 0.120 3.880 13 C -0.115 4.115 14 C -0.072 4.072 15 C 0.030 3.970 16 C -0.524 4.524 17 H 0.068 0.932 18 C -0.005 4.005 19 N -0.939 5.939 20 Si 0.959 3.041 21 H -0.276 1.276 22 H -0.288 1.288 23 H -0.259 1.259 24 C -0.126 4.126 25 C 0.126 3.874 26 H 0.107 0.893 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.096 0.904 30 H 0.098 0.902 31 H 0.125 0.875 32 H 0.225 0.775 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.066 0.934 38 H -0.018 1.018 39 H -0.012 1.012 40 H 0.260 0.740 41 H 0.047 0.953 42 H 0.075 0.925 43 H 0.099 0.901 44 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.213 19.972 -9.824 27.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.017 4.017 3 N -0.146 5.146 4 N -0.138 5.138 5 C -0.058 4.058 6 C 0.026 3.974 7 C -0.931 4.931 8 S 2.827 3.173 9 O -0.977 6.977 10 O -0.976 6.976 11 N -0.833 5.833 12 C -0.005 4.005 13 C -0.154 4.154 14 C -0.090 4.090 15 C -0.007 4.007 16 C -0.562 4.562 17 H 0.086 0.914 18 C -0.202 4.202 19 N -0.580 5.580 20 Si 0.784 3.216 21 H -0.202 1.202 22 H -0.214 1.214 23 H -0.183 1.183 24 C -0.165 4.165 25 C 0.002 3.998 26 H 0.125 0.875 27 H 0.113 0.887 28 H 0.109 0.891 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.241 0.759 33 H 0.110 0.890 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.060 0.940 37 H 0.085 0.915 38 H 0.001 0.999 39 H 0.006 0.994 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.117 0.883 44 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.507 20.684 -10.429 28.444 hybrid contribution -0.870 -0.784 0.622 1.325 sum 15.637 19.900 -9.808 27.143 Atomic orbital electron populations 1.20841 0.84946 1.05636 1.05471 1.22170 0.97601 0.88438 0.93445 1.77316 0.87400 1.22904 1.26968 1.49351 1.06518 1.05404 1.52504 1.22497 0.82456 0.95285 1.05590 1.22991 0.98483 0.85595 0.90346 1.31391 1.01700 1.23778 1.36200 1.00263 0.72190 0.72871 0.71971 1.93491 1.50064 1.67435 1.86706 1.93511 1.60867 1.87006 1.56209 1.57494 1.17103 1.81025 1.27662 1.21702 0.77792 0.98035 1.02938 1.21840 1.00125 0.97072 0.96408 1.21061 0.93613 0.98004 0.96346 1.19055 0.94549 0.93287 0.93823 1.21710 0.97898 0.96861 1.39734 0.91415 1.25963 1.03061 0.94988 0.96182 1.70109 1.37898 1.03662 1.46319 0.85535 0.79764 0.78631 0.77647 1.20172 1.21428 1.18307 1.21926 0.96057 0.97603 1.00922 1.21526 0.95123 0.96135 0.87040 0.87507 0.88661 0.89079 0.88598 0.88338 0.85688 0.75877 0.89017 0.88396 0.90788 0.94040 0.91519 0.99925 0.99380 0.93152 0.93455 0.90630 0.88278 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.09 9.52 71.24 0.68 -1.41 16 2 C 0.15 3.50 7.22 43.10 0.31 3.81 16 3 N -0.32 -7.42 12.58 -47.38 -0.60 -8.02 16 4 N -0.36 -6.04 4.01 -369.55 -1.48 -7.52 16 5 C 0.08 0.48 11.47 127.77 1.47 1.95 16 6 C 0.18 3.11 11.12 83.54 0.93 4.04 16 7 C -0.83 -18.66 6.15 21.99 0.14 -18.52 16 8 S 2.74 73.12 5.60 -56.49 -0.32 72.80 16 9 O -0.99 -29.28 16.33 -128.00 -2.09 -31.37 16 10 O -0.99 -31.55 15.25 -128.00 -1.95 -33.50 16 11 N -0.99 -25.79 3.29 -513.07 -1.69 -27.48 16 12 C 0.12 3.14 5.72 86.36 0.49 3.64 16 13 C -0.12 -4.05 5.21 30.78 0.16 -3.89 16 14 C -0.07 -2.75 2.10 -10.66 -0.02 -2.77 16 15 C 0.03 1.54 4.45 29.85 0.13 1.68 16 16 C -0.52 -28.77 8.39 25.60 0.21 -28.56 16 17 H 0.07 3.49 7.06 -2.91 -0.02 3.46 16 18 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 19 N -0.94 -57.55 13.28 21.45 0.28 -57.27 16 20 Si 0.96 43.98 29.54 68.60 2.03 46.00 16 21 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 22 H -0.29 -13.15 7.11 99.48 0.71 -12.44 16 23 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 24 C -0.13 -4.08 5.36 30.67 0.16 -3.91 16 25 C 0.13 3.13 6.48 86.36 0.56 3.69 16 26 H 0.11 1.63 7.88 -2.39 -0.02 1.61 16 27 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.09 1.83 5.52 -2.39 -0.01 1.82 16 29 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 32 H 0.22 2.17 8.06 -2.91 -0.02 2.14 16 33 H 0.09 1.95 7.95 -2.39 -0.02 1.93 16 34 H 0.10 2.37 5.71 -2.39 -0.01 2.36 16 35 H 0.07 2.72 6.93 -2.39 -0.02 2.71 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 38 H -0.02 -1.02 8.14 -2.39 -0.02 -1.04 16 39 H -0.01 -0.68 8.14 -2.39 -0.02 -0.70 16 40 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 41 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 43 H 0.10 2.20 6.92 -2.39 -0.02 2.18 16 44 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -78.99 363.73 0.86 -78.13 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.99 Total: 8.32 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 5.68 Total: -40.10 kcal Atomic # 7 Polarization: -96.81 SS G_CDS: -3.48 Total: -100.29 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -4.04 Total: -64.87 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.00 kcal Atomic # 16 Polarization: 73.12 SS G_CDS: -0.32 Total: 72.80 kcal Total: -78.99 0.86 -78.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000578763658.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.226 kcal (2) G-P(sol) polarization free energy of solvation -78.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds